PATATIN-LIKE PHOSPHOLIPASE DOMAIN CONTAINING 3 (PNPLA3) iRNA COMPOSITIONS AND METHODS OF USE THEREOF

ABSTRACT

The present invention relates to RNAi agents, e.g., double stranded RNAi agents, targeting the Patatin-Like Phospholipase Domain Containing 3 (PNPLA3) gene, and methods of using such RNAi agents to inhibit expression of a PNPLA3 gene and methods of treating subjects having Nonalcoholic Fatty Liver Disease (NAFLD) and/or a PNPLA3-associated disorder.

RELATED APPLICATIONS

This application is a 35 §U.S.C. 111(a) continuation application whichclaims the benefit of priority to PCT/US2016/017550, filed on Feb. 11,2016, to U.S. Provisional Patent Application No. 62/115,724, filed onFeb. 13, 2015, and to U.S. Provisional Patent Application No.62/266,818, filed on Dec. 14, 2015. The entire contents of each of theforegoing applications are hereby incorporated herein by reference.

SEQUENCE LISTING

The instant application contains a Sequence Listing which has beensubmitted electronically in ASCII format and is hereby incorporated byreference in its entirety. Said ASCII copy, created on Jul. 27, 2017, isnamed 121301-03203_SL.txt and is 529,849 bytes in size.

BACKGROUND OF THE INVENTION

The accumulation of excess triglyceride in the liver is known as hepaticsteatosis (or fatty liver), and is associated with adverse metabolicconsequences, including insulin resistance and dyslipidemia. Fatty liveris frequently found in subjects having excessive alcohol intake andsubjects having obesity, diabetes, or hyperlipidemia. However, in theabsence of excessive alcohol intake (>10 g/day), nonalcoholic fattyliver disease (NAFLD) can develop. NAFLD refers to a wide spectrum ofliver diseases that can progress from simple fatty liver (steatosis), tononalcoholic steatohepatitis (NASH), to cirrhosis (irreversible,advanced scarring of the liver). All of the stages of NAFLD have incommon the accumulation of fat (fatty infiltration) in the liver cells(hepatocytes).

The NAFLD spectrum begins with and progress from its simplest stage,called simple fatty liver (steatosis). Simple fatty liver involves theaccumulation of fat (triglyceride) in the liver cells with noinflammation (hepatitis) or scarring (fibrosis). The next stage anddegree of severity in the NAFLD spectrum is NASH, which involves theaccumulation of fat in the liver cells, as well as inflammation of theliver. The inflammatory cells destroy liver cells (hepatocellularnecrosis), and NASH ultimately leads to scarring of the liver(fibrosis), followed by irreversible, advanced scarring (cirrhosis).Cirrhosis that is caused by NASH is the last and most severe stage inthe NAFLD spectrum.

In 2008, a genomewide association study of individuals with protonmagnetic resonance spectroscopy of the liver to evaluate hepatic fatcontent, a significant association was identified between hepatic fatcontent and the Patatin-like Phospholipase Domain Containing 3 (PNPLA3)gene (see, for example, Romeo et al. (2008) Nat. Genet.,40(12):1461-1465). Studies with knock-in mice have demonstrated thatexpression of a sequence polymorphism (rs738409, I148M) in PNPLA3 causesNAFLD, and that the accumulation of catalytically inactive PNPLA3 on thesurfaces of lipid droplets is associated with the accumulation oftriglycerides in the liver (Smagris et al. (2015) Hepatology,61:108-118). Specifically, the PNPLA3 I148M variant was associated withpromoting the development of fibrogenesis by activating the hedgehog(Hh) signaling pathway, leading to the activation and proflieration ofhepatic stellate cells and excessive generation and deposition ofextracellular matrix (Chen et al. (2015) World J. Gastroenterol.,21(3):794-802).

Currently, treatments for NAFLD are directed towards weight loss andtreatment of any secondary conditions, such as insulin resistance ordyslipidemia. To date, no pharmacologic treatments for NAFLD have beenapproved. Therefore, there is a need for therapies for subjectssuffering from NAFLD.

SUMMARY OF THE INVENTION

The present invention provides iRNA compositions which effect theRNA-induced silencing complex (RISC)-mediated cleavage of RNAtranscripts of a PNPLA3 gene. The PNPLA3 gene may be within a cell,e.g., a cell within a subject, such as a human.

In one aspect, the invention provides a double stranded ribonucleic acid(RNAi) agent for inhibiting expression of Patatin-Like PhospholipaseDomain Containing 3 (PNPLA3), wherein the double stranded RNAi agentcomprises a sense strand and an antisense strand, wherein the sensestrand comprises at least 15 contiguous nucleotides differing by no morethan 3 nucleotides from the nucleotide sequence of SEQ ID NO:1 and theantisense strand comprises at least 15 contiguous nucleotides differingby no more than 3 nucleotides from the nucleotide sequence of SEQ IDNO:2.

In one embodiment, the sense and antisense strands comprise sequencesselected from the group consisting of any of the sequences in any one ofTables 3-5, 7, and 8.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting expression of Patatin-LikePhospholipase Domain Containing 3 (PNPLA3), wherein the double strandedRNAi agent comprises a sense strand and an antisense strand, theantisense strand comprising a region of complementarity which comprisesat least 15 contiguous nucleotides differing by no more than 3nucleotides from any one of the antisense sequences listed in any one ofTables 3-5, 7, and 8.

In one embodiment, the double stranded RNAi agent comprises at least onemodified nucleotide. In another embodiment, all of the nucleotides ofthe sense strand and all of the nucleotides of the antisense strandcomprise a modification.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting expression of Patatin-LikePhospholipase Domain Containing 3 (PNPLA3), wherein the double strandedRNAi agent comprises a sense strand and an antisense strand forming adouble stranded region, wherein the sense strand comprises at least 15contiguous nucleotides differing by no more than 3 nucleotides from thenucleotide sequence of SEQ ID NO:1 and the antisense strand comprises atleast 15 contiguous nucleotides differing by no more than 3 nucleotidesfrom the nucleotide sequence of SEQ ID NO:2, wherein substantially allof the nucleotides of the sense strand and substantially all of thenucleotides of the antisense strand are modified nucleotides, andwherein the sense strand is conjugated to a ligand attached at the3′-terminus.

In one embodiment, all of the nucleotides of the sense strand and all ofthe nucleotides of the antisense strand comprise a modification. In oneembodiment, at least one of the modified nucleotides is selected fromthe group consisting of a deoxy-nucleotide, a 3′-terminal deoxy-thymine(dT) nucleotide, a 2′-O-methyl modified nucleotide, a 2′-fluoro modifiednucleotide, a 2′-deoxy-modified nucleotide, a locked nucleotide, anunlocked nucleotide, a conformationally restricted nucleotide, aconstrained ethyl nucleotide, an abasic nucleotide, a 2′-amino-modifiednucleotide, a 2′-O-allyl-modified nucleotide, 2′-C-alkyl-modifiednucleotide, 2′-hydroxly-modified nucleotide, a 2′-methoxyethyl modifiednucleotide, a 2′-O-alkyl-modified nucleotide, a morpholino nucleotide, aphosphoramidate, a non-natural base comprising nucleotide, atetrahydropyran modified nucleotide, a 1,5-anhydrohexitol modifiednucleotide, a cyclohexenyl modified nucleotide, a nucleotide comprisinga phosphorothioate group, a nucleotide comprising a methylphosphonategroup, a nucleotide comprising a 5′-phosphate, and a nucleotidecomprising a 5′-phosphate mimic. In another embodiment, the modifiednucleotides comprise a short sequence of 3′-terminal deoxy-thyminenucleotides (dT).

In one embodiment, the region of complementarity is at least 17nucleotides in length. In another embodiment, the region ofcomplementarity is between 19 and 21 nucleotides in length. In anotherembodiment, the region of complementarity is 19 nucleotides in length.In another embodiment, each strand is no more than 30 nucleotides inlength.

In one embodiment, at least one strand comprises a 3′ overhang of atleast 1 nucleotide. In another embodiment, at least one strand comprisesa 3′ overhang of at least 2 nucleotides.

In one embodiment, the double stranded RNAi agent further comprises aligand. In one embodiment, the ligand is conjugated to the 3′ end of thesense strand of the double stranded RNAi agent. In another embodiment,the ligand is an N-acetylgalactosamine (GalNAc) derivative. In oneembodiment, the ligand is

In another embodiment, the double stranded RNAi agent is conjugated tothe ligand as shown in the following schematic:

and, wherein X is O or S. In one embodiment, the X is O.

In one embodiment, the region of complementarity comprises one of theantisense sequences in any one of Tables 3-5, 7, and 8. In anotherembodiment, the region of complementarity consists of one of theantisense sequences in any one of Tables 3-5, 7, and 8.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting the expression of PNPLA3, wherein thedouble stranded RNAi agent comprises a sense strand complementary to anantisense strand, wherein the antisense strand comprises a regioncomplementary to part of an mRNA encoding PNPLA3, wherein each strand isabout 14 to about 30 nucleotides in length, wherein the double strandedRNAi agent is represented by formula (III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein: i, j, k, and l are each independently 0 or 1; p, p′, q, and q′are each independently 0-6; each N_(a) and N_(a)′ independentlyrepresents an oligonucleotide sequence comprising 0-25 nucleotides whichare either modified or unmodified or combinations thereof, each sequencecomprising at least two differently modified nucleotides; each N_(b) andN_(b)′ independently represents an oligonucleotide sequence comprising0-10 nucleotides which are either modified or unmodified or combinationsthereof; each n_(p), n_(p)′, n_(q), and n_(q)′, each of which may or maynot be present, independently represents an overhang nucleotide; XXX,YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent onemotif of three identical modifications on three consecutive nucleotides;modifications on N_(b) differ from the modification on Y andmodifications on N_(b)′ differ from the modification on Y′; and whereinthe sense strand is conjugated to at least one ligand.

In one embodiment, i is 0; j is 0; i is 1; j is 1; both i and j are 0;or both i and j are 1. In another embodiment, k is 0; l is 0; k is 1; lis 1; both k and l are 0; or both k and l are 1. In another embodiment,XXX is complementary to X′X′X′, YYY is complementary to Y′Y′Y′, and ZZZis complementary to Z′Z′Z′. In another embodiment, the YYY motif occursat or near the cleavage site of the sense strand. In another embodiment,the Y′Y′Y′ motif occurs at the 11, 12 and 13 positions of the antisensestrand from the 5′-end. In one embodiment, the Y′ is 2′-O-methyl.

In one embodiment, formula (III) is represented by formula (IIIa):

(IIIa) sense: 5′ n_(p)-N_(a)-Y Y Y-N_(a)-n_(q) 3′. antisense:3′ n_(p)′-N_(a)′-Y′Y′Y′-N_(a)′-n_(q)′ 5′

In another embodiment, formula (III) is represented by formula (IIIb):

(IIIb) sense: 5′ n_(p)-N_(a)-Y Y Y-N_(b)-Z Z Z-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-Y′Y′Y′-N_(b)′-Z′Z′Z′-N_(a)′-n_(q)′ 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides.

In another embodiment, formula (III) is represented by formula (IIIc):

(IIIc) sense: 5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-X′X′X′-N_(b)′-Y′Y′Y′-N_(a)′-n_(q)′ 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides.

In another embodiment, formula (III) is represented by formula (IIId):

(IIId) sense: 5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(b)-Z Z Z-N_(a)-n_(q)3′ antisense:3′ n_(p)′-N_(a)′-X′X′X′-N_(b)′-Y′Y′Y′-N_(b)′-Z′Z′Z′-N_(a)′-n_(q)′ 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides and eachN_(a) and N_(a)′ independently represents an oligonucleotide sequencecomprising 2-10 modified nucleotides.

In one embodiment, the double stranded region is 15-30 nucleotide pairsin length. In another embodiment, the double stranded region is 17-23nucleotide pairs in length. In another embodiment, the double strandedregion is 17-25 nucleotide pairs in length. In another embodiment, thedouble stranded region is 23-27 nucleotide pairs in length. In anotherembodiment, the double stranded region is 19-21 nucleotide pairs inlength. In another embodiment, the double stranded region is 21-23nucleotide pairs in length.

In one embodiment, each strand has 15-30 nucleotides. In anotherembodiment, each strand has 19-30 nucleotides.

In one embodiment, the modifications on the nucleotides are selectedfrom the group consisting of LNA, HNA, CeNA, 2′-methoxyethyl,2′-O-alkyl, 2′-O-allyl, 2′-C-allyl, 2′-fluoro, 2′-deoxy, 2′-hydroxyl,and combinations thereof. In another embodiment, the modifications onthe nucleotides are 2′-O-methyl or 2′-fluoro modifications.

In one embodiment, the ligand is one or more GalNAc derivatives attachedthrough a bivalent or trivalent branched linker. In one embodiment, theligand is

In one embodiment, the ligand is attached to the 3′ end of the sensestrand.

In one embodiment, the double stranded RNAi agent is conjugated to theligand as shown in the following schematic

In one embodiment, the double stranded RNAi agent further comprises atleast one phosphorothioate or methylphosphonate internucleotide linkage.In one embodiment, the phosphorothioate or methylphosphonateinternucleotide linkage is at the 3′-terminus of one strand. In oneembodiment, the strand is the antisense strand. In another embodiment,the strand is the sense strand.

In one embodiment, the phosphorothioate or methylphosphonateinternucleotide linkage is at the 5′-terminus of one strand. In anotherembodiment, the strand is the antisense strand. In another embodiment,the strand is the sense strand.

In one embodiment, the phosphorothioate or methylphosphonateinternucleotide linkage is at the both the 5′- and 3′-terminus of onestrand. In another embodiment, the strand is the antisense strand.

In one embodiment, the base pair at the 1 position of the 5′-end of theantisense strand of the duplex is an AU base pair.

In one embodiment, the Y nucleotides contain a 2′-fluoro modification.In another embodiment, the Y′ nucleotides contain a 2′-O-methylmodification. In another embodiment, p′>0. In another embodiment, p′=2.In another embodiment, q′=0, p=0, q=0, and p′ overhang nucleotides arecomplementary to the target mRNA. In another embodiment, q′=0, p=0, q=0,and p′ overhang nucleotides are non-complementary to the target mRNA.

In one embodiment, the sense strand has a total of 21 nucleotides andthe antisense strand has a total of 23 nucleotides.

In one embodiment, at least one n_(p)′ is linked to a neighboringnucleotide via a phosphorothioate linkage. In another embodiment, alln_(p)′ are linked to neighboring nucleotides via phosphorothioatelinkages.

In one embodiment, the double stranded RNAi agent is selected from thegroup of RNAi agents listed in any one of Tables 3-5, 7, and 8. Inanother embodiment, all of the nucleotides of the sense strand and allof the nucleotides of the antisense strand comprise a modification.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting the expression of PNPLA3 in a cell,wherein the double stranded RNAi agent comprises a sense strandcomplementary to an antisense strand, wherein the antisense strandcomprises a region complementary to part of an mRNA encoding PNPLA3,wherein each strand is about 14 to about 30 nucleotides in length,wherein the double stranded RNAi agent is represented by formula (III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein i, j, k, and l are each independently 0 or 1; p, p′, q, and q′are each independently 0-6; each N_(a) and N_(a)′ independentlyrepresents an oligonucleotide sequence comprising 0-25 nucleotides whichare either modified or unmodified or combinations thereof, each sequencecomprising at least two differently modified nucleotides; each N_(b) andN_(b)′ independently represents an oligonucleotide sequence comprising0-10 nucleotides which are either modified or unmodified or combinationsthereof; each n_(p), n_(p)′, n_(q), and n_(q)′, each of which may or maynot be present independently represents an overhang nucleotide; XXX,YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent onemotif of three identical modifications on three consecutive nucleotides,and wherein the modifications are 2′-O-methyl or 2′-fluoromodifications; modifications on N_(b) differ from the modification on Yand modifications on N_(b)′ differ from the modification on Y′; andwherein the sense strand is conjugated to at least one ligand.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting the expression of PNPLA3 in a cell,wherein the double stranded RNAi agent comprises a sense strandcomplementary to an antisense strand, wherein the antisense strandcomprises a region complementary to part of an mRNA encoding PNPLA3,wherein each strand is about 14 to about 30 nucleotides in length,wherein the double stranded RNAi agent is represented by formula (III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein: i, j, k, and l are each independently 0 or 1; each n_(p),n_(q), and n_(q)′, each of which may or may not be present,independently represents an overhang nucleotide;

p, q, and q′ are each independently 0-6; n_(p)′>0 and at least onen_(p)′ is linked to a neighboring nucleotide via a phosphorothioatelinkage; each N_(a) and N_(a)′ independently represents anoligonucleotide sequence comprising 0-25 nucleotides which are eithermodified or unmodified or combinations thereof, each sequence comprisingat least two differently modified nucleotides; each N_(b) and N_(b)′independently represents an oligonucleotide sequence comprising 0-10nucleotides which are either modified or unmodified or combinationsthereof; XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independentlyrepresent one motif of three identical modifications on threeconsecutive nucleotides, and wherein the modifications are 2′-O-methylor 2′-fluoro modifications; modifications on N_(b) differ from themodification on Y and modifications on N_(b)′ differ from themodification on Y′; and wherein the sense strand is conjugated to atleast one ligand.

In another embodiment, the invention provides a doublestranded-ribonucleic acid (RNAi) agent for inhibiting the expression ofPNPLA3 in a cell, wherein the double stranded RNAi agent comprises asense strand complementary to an antisense strand, wherein the antisensestrand comprises a region complementary to part of an mRNA encodingPNPLA3, wherein each strand is about 14 to about 30 nucleotides inlength, wherein the double stranded RNAi agent is represented by formula(III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein i, j, k, and l are each independently 0 or 1; each n_(p), n_(q),and n_(q)′, each of which may or may not be present, independentlyrepresents an overhang nucleotide; p, q, and q′ are each independently0-6; n_(p)′>0 and at least one n_(p)′ is linked to a neighboringnucleotide via a phosphorothioate linkage; each N_(a) and N_(a)′independently represents an oligonucleotide sequence comprising 0-25nucleotides which are either modified or unmodified or combinationsthereof, each sequence comprising at least two differently modifiednucleotides; each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 0-10 nucleotides which are eithermodified or unmodified or combinations thereof; XXX, YYY, ZZZ, X′X′X′,Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of threeidentical modifications on three consecutive nucleotides, and whereinthe modifications are 2′-O-methyl or 2′-fluoro modifications;modifications on N_(b) differ from the modification on Y andmodifications on N_(b)′ differ from the modification on Y′; and whereinthe sense strand is conjugated to at least one ligand, wherein theligand is one or more GalNAc derivatives attached through a bivalent ortrivalent branched linker.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting the expression of PNPLA3 in a cell,wherein the double stranded RNAi agent comprises a sense strandcomplementary to an antisense strand, wherein the antisense strandcomprises a region complementary to part of an mRNA encoding PNPLA3,wherein each strand is about 14 to about 30 nucleotides in length,wherein the double stranded RNAi agent is represented by formula (III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein i, j, k, and l are each independently 0 or 1; each n_(p), n_(q),and n_(q)′, each of which may or may not be present, independentlyrepresents an overhang nucleotide; p, q, and q′ are each independently0-6; n_(p)′>0 and at least one n_(p)′ is linked to a neighboringnucleotide via a phosphorothioate linkage; each N_(a) and N_(a)′independently represents an oligonucleotide sequence comprising 0-25nucleotides which are either modified or unmodified or combinationsthereof, each sequence comprising at least two differently modifiednucleotides; each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 0-10 nucleotides which are eithermodified or unmodified or combinations thereof; XXX, YYY, ZZZ, X′X′X′,Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of threeidentical modifications on three consecutive nucleotides, and whereinthe modifications are 2′-O-methyl or 2′-fluoro modifications;modifications on N_(b) differ from the modification on Y andmodifications on N_(b)′ differ from the modification on Y′; wherein thesense strand comprises at least one phosphorothioate linkage; andwherein the sense strand is conjugated to at least one ligand, whereinthe ligand is one or more GalNAc derivatives attached through a bivalentor trivalent branched linker.

In another aspect, the invention provides a double stranded ribonucleicacid (RNAi) agent for inhibiting the expression of PNPLA3 in a cell,wherein the double stranded RNAi agent comprises a sense strandcomplementary to an antisense strand, wherein the antisense strandcomprises a region complementary to part of an mRNA encoding PNPLA3,wherein each strand is about 14 to about 30 nucleotides in length,wherein the double stranded RNAi agent is represented by formula (III):

(IIIa) sense: 5′ n_(p)-N_(a)-Y Y Y-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-Y′Y′Y′-N_(a)′-n_(q)′ 5′

wherein each n_(p), n_(q), and n_(q)′, each of which may or may not bepresent, independently represents an overhang nucleotide; p, q, and q′are each independently 0-6; n_(p)′>0 and at least one n_(p)′ is linkedto a neighboring nucleotide via a phosphorothioate linkage; each N_(a)and N_(a)′ independently represents an oligonucleotide sequencecomprising 0-25 nucleotides which are either modified or unmodified orcombinations thereof, each sequence comprising at least two differentlymodified nucleotides; YYY and Y′Y′Y′ each independently represent onemotif of three identical modifications on three consecutive nucleotides,and wherein the modifications are 2′-O-methyl or 2′-fluoromodifications; wherein the sense strand comprises at least onephosphorothioate linkage; and wherein the sense strand is conjugated toat least one ligand, wherein the ligand is one or more GalNAcderivatives attached through a bivalent or trivalent branched linker.

In another aspect, the invention provides a double stranded-ribonucleicacid (RNAi) agent for inhibiting expression of PNPLA3, wherein thedouble stranded RNAi agent comprises a sense strand and an antisensestrand forming a double stranded region, wherein the sense strandcomprises at least 15 contiguous nucleotides differing by no more than 3nucleotides from the nucleotide sequence of SEQ ID NO:1 and theantisense strand comprises at least 15 contiguous nucleotides differingby no more than 3 nucleotides from the nucleotide sequence of SEQ IDNO:2, wherein substantially all of the nucleotides of the sense strandcomprise a modification selected from the group consisting of a2′-O-methyl modification and a 2′-fluoro modification, wherein the sensestrand comprises two phosphorothioate internucleotide linkages at the5′-terminus, wherein substantially all of the nucleotides of theantisense strand comprise a modification selected from the groupconsisting of a 2′-O-methyl modification and a 2′-fluoro modification,wherein the antisense strand comprises two phosphorothioateinternucleotide linkages at the 5′-terminus and two phosphorothioateinternucleotide linkages at the 3′-terminus, and wherein the sensestrand is conjugated to one or more GalNAc derivatives attached througha branched bivalent or trivalent linker at the 3′-terminus.

In one embodiment, all of the nucleotides of the sense strand and all ofthe nucleotides of the antisense strand are modified nucleotides. Inanother embodiment, each strand has 19-30 nucleotides.

In another aspect, the invention provides a cell containing the doublestranded RNAi agent as described herein.

In another aspect, the invention provides a vector encoding at least onestrand of a double stranded RNAi agent, wherein the double stranded RNAiagent comprises a region of complementarity to at least a part of anmRNA encoding PNPLA3, wherein the double stranded RNAi agent is 30 basepairs or less in length, and wherein the double stranded RNAi agenttargets the mRNA for cleavage. In one embodiment, the region ofcomplementarity is at least 15 nucleotides in length. In anotherembodiment, the region of complementarity is 19 to 21 nucleotides inlength.

In another aspect, the invention provides a cell comprising a vector asdescribed herein.

In another aspect, the invention provides a pharmaceutical compositionfor inhibiting expression of a PNPLA3 gene comprising the doublestranded RNAi agent of the invention. In one embodiment, the doublestranded RNAi agent is administered in an unbuffered solution. Inanother embodiment, the unbuffered solution is saline or water. Inanother embodiment, the double stranded RNAi agent is administered witha buffer solution. In another embodiment, the buffer solution comprisesacetate, citrate, prolamine, carbonate, or phosphate or any combinationthereof. In another embodiment, the buffer solution is phosphatebuffered saline (PBS).

In another aspect, the invention provides a pharmaceutical compositioncomprising the double stranded RNAi agent of the invention and a lipidformulation. In one embodiment, the lipid formulation comprises a LNP.In another embodiment, the lipid formulation comprises a MC3.

In another aspect, the invention provides a method of inhibiting PNPLA3expression in a cell, the method comprising (a) contacting the cell withthe double stranded RNAi agent of the invention or a pharmaceuticalcomposition of the invention; and (b) maintaining the cell produced instep (a) for a time sufficient to obtain degradation of the mRNAtranscript of a PNPLA3 gene, thereby inhibiting expression of the PNPLA3gene in the cell. In one embodiment, the cell is within a subject. Inanother embodiment, the subject is a human. In one embodiment, thesubject is a female human. In another embodiment, the subject is a malehuman. In one embodiment, the PNPLA3 expression is inhibited by at leastabout 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about90%, about 95%, about 98% or about 100%.

In another aspect, the invention provides a method of treating a subjecthaving a disease or disorder that would benefit from reduction in PNPLA3expression, the method comprising administering to the subject atherapeutically effective amount of the double stranded RNAi agent ofthe invention or a pharmaceutical composition of the invention, therebytreating the subject.

In another aspect, the invention provides a method of preventing atleast one symptom in a subject having a disease or disorder that wouldbenefit from reduction in PNPLA3 expression, the method comprisingadministering to the subject a prophylactically effective amount of thedouble stranded RNAi agent of the invention or a pharmaceuticalcomposition of the invention, thereby preventing at least one symptom inthe subject having a disorder that would benefit from reduction inPNPLA3 expression.

In one embodiment, the administration of the double stranded RNAi to thesubject causes a decrease in the hedgehog signaling pathway.

In one embodiment, the PNPLA3-associated disease is a PNPLA3-associateddisease. In another embodiment, the PNPLA3-associated disease isnonalcoholic fatty liver disease (NAFLD). In another embodiment, thePNPLA3-associated disease is fatty liver (steatosis). In anotherembodiment, the PNPLA3-associated disease is nonalcoholicsteatohepatitis (NASH). In another embodiment, the PNPLA3-associateddisease is obesity. In one embodiment, the subject is human. In anotherembodiment, the subject is a female human. In another embodiment, thesubject is a male human. In one embodiment, the subject has a PNPLA3I148M mutation. In one embodiment, the mutation is heterozygous. Inanother embodiment, the mutation is homozygous.

In another embodiment, the invention further comprises administering ananti-PNPLA3 antibody, or antigen-binding fragment thereof, to thesubject.

In one embodiment, the double stranded RNAi agent is administered at adose of about 0.01 mg/kg to about 10 mg/kg or about 0.5 mg/kg to about50 mg/kg. In one embodiment, the dsRNA agent is administered at a doseof about 10 mg/kg to about 30 mg/kg. In another embodiment, the dsRNAagent is administered at a dose selected from the group consisting of0.5 mg/kg 1 mg/kg, 1.5 mg/kg, 3 mg/kg, 5 mg/kg, 10 mg/kg, and 30 mg/kg.

In one embodiment, the double stranded RNAi agent is administered to thesubject once a week. In another embodiment, the double stranded RNAiagent is administered to the subject once a month.

In one embodiment, the double stranded RNAi agent is administered to thesubject subcutaneously.

In another embodiment, the methods of the invention further comprisemeasuring hedgehog signaling pathway levels in the subject. In oneembodiment, a decrease in the levels of expression or activity of thehedgehog (Hh) signaling pathway indicate that the PNPLA3-associateddisease is being treated or prevented.

The present invention is further illustrated by the following detaileddescription and drawings.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a graph showing the percentage of PNPLA3 mRNA remaining in theliver of ob/ob mice following administration of a single dose of 0.3mg/kg, 1.5 mg/kg, or 3.0 mg/kg of the indicated iRNA agents.

DETAILED DESCRIPTION OF THE INVENTION

The present invention provides iRNA compositions which effect theRNA-induced silencing complex (RISC)-mediated cleavage of RNAtranscripts of a Patatin-Like Phospholipase Domain Containing 3 (PNPLA3)gene. The gene may be within a cell, e.g., a cell within a subject, suchas a human. The use of these iRNAs enables the targeted degradation ofmRNAs of the corresponding gene (PNPLA3 gene) in mammals.

The RNAi agents of the invention have been designed to target the humanPNPLA3 gene, including portions of the gene that are conserved in thePNPLA3 othologs of other mammalian species. Without intending to belimited by theory, it is believed that a combination or sub-combinationof the foregoing properties and the specific target sites and/or thespecific modifications in these RNAi agents confer to the RNAi agents ofthe invention improved efficacy, stability, potency, durability, andsafety.

Accordingly, the present invention also provides methods for treating asubject having a disorder that would benefit from inhibiting or reducingthe expression of a PNPLA3 gene, e.g., an PNPLA3-associated disease,such as Nonalcoholic Fatty Liver Disease (NAFLD), using iRNAcompositions which effect the RNA-induced silencing complex(RISC)-mediated cleavage of RNA transcripts of a PNPLA3 gene.

Very low dosages of the iRNAs of the invention, in particular, canspecifically and efficiently mediate RNA interference (RNAi), resultingin significant inhibition of expression of the correponding gene (PNPLA3gene).

The iRNAs of the invention include an RNA strand (the antisense strand)having a region which is about 30 nucleotides or less in length, e.g.,15-30, 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21,15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25,18-24, 18-23, 18-22, 18-21, 18-20, 19-30, 19-29, 19-28, 19-27, 19-26,19-25, 19-24, 19-23, 19-22, 19-21, 19-20, 20-30, 20-29, 20-28, 20-27,20-26, 20-25, 20-24, 20-23, 20-22, 20-21, 21-30, 21-29, 21-28, 21-27,21-26, 21-25, 21-24, 21-23, or 21-22 nucleotides in length, which regionis substantially complementary to at least part of an mRNA transcript ofa PNPLA3 gene.

The following detailed description discloses how to make and usecompositions containing iRNAs to inhibit the expression of anangiotensinogen gene as well as compositions, uses, and methods fortreating subjects having diseases and disorders that would benefit frominhibition and/or reduction of the expression of a PNPLA3 gene.

I. Definitions

In order that the present invention may be more readily understood,certain terms are first defined. In addition, it should be noted thatwhenever a value or range of values of a parameter are recited, it isintended that values and ranges intermediate to the recited values arealso intended to be part of this invention.

The articles “a” and “an” are used herein to refer to one or to morethan one (i.e., to at least one) of the grammatical object of thearticle. By way of example, “an element” means one element or more thanone element, e.g., a plurality of elements.

The term “including” is used herein to mean, and is used interchangeablywith, the phrase “including but not limited to”.

The term “about” is used herein to mean within the typical ranges oftolerances in the art. For example, “about” can be understood as about 2standard deviations from the mean. In certain embodiments, aboutmeans±10%. In certain embodiments, about means±5%. When about is presentbefore a series of numbers or a range, it is understood that “about” canmodify each of the numbers in the series or range.

The term “at least” prior to a number or series of numbers is understoodto include the number adjacent to the term “at least”, and allsubsequent numbers or integers that could logically be included, asclear from context. For example, the number of nucleotides in a nucleicacid molecule must be an integer. For example, “at least 18 nucleotidesof a 21 nucleotide nucleic acid molecule” means that 18, 19, 20, or 21nucleotides have the indicated property. When at least is present beforea series of numbers or a range, it is understood that “at least” canmodify each of the numbers in the series or range.

As used herein, “no more than” or “less than” is understood as the valueadjacent to the phrase and logical lower values or intergers, as logicalfrom context, to zero. For example, a duplex with an overhang of “nomore than 2 nucleotides” has a 2, 1, or 0 nucleotide overhang. When “nomore than” is present before a series of numbers or a range, it isunderstood that “no more than” can modify each of the numbers in theseries or range.

As used herein, “Patatin-Like Phospholipase Domain Containing 3,” usedinterchangeably with the term “PNPLA3,” refers to the naturallyoccurring gene that encodes a triacylglycerol lipase that mediatestriacyl glycerol hydrolysis in adipocytes. The amino acid and completecoding sequences of the reference sequence of the human PNPLA3 gene maybe found in, for example, GenBank Accession No. GI:17196625 (RefSeqAccession No. NM_025225.2; SEQ ID NO:1; SEQ ID NO:2). Mammalianorthologs of the human PNPLA3 gene may be found in, for example, GenBankAccession Nos. GI: 544461323 (RefSeq Accession No. XM_005567051.1,cynomolgus monkey; SEQ ID NO:7 and SEQ ID NO:8); GI: 544461325 (RefSeqAccession No. XM_005567052.1, cynomolgus monkey; SEQ ID NO:11 and SEQ IDNO:12); GI:297261270 (RefSeq Accession No. XM_001109144.2, rhesusmonkey, SEQ ID NO:9 and SEQ ID NO:10); GI:144226244 (RefSeq AccessionNo. NM_054088.3, mouse; SEQ ID NO:3 and SEQ ID NO:4); GI:537361027(RefSeq Accession No. NM_001282324.1, rat; SEQ ID NO:5 and SEQ ID NO:6).

Additional examples of PNPLA3 mRNA sequences are readily available usingpublicly available databases, e.g., GenBank, UniProt, and OMIM.

As used herein, “target sequence” refers to a contiguous portion of thenucleotide sequence of an mRNA molecule formed during the transcriptionof an PNPLA3 gene, including mRNA that is a product of RNA processing ofa primary transcription product. In one embodiment, the target portionof the sequence will be at least long enough to serve as a substrate foriRNA-directed cleavage at or near that portion of the nucleotidesequence of an mRNA molecule formed during the transcription of anPNPLA3 gene. In one embodiment, the target sequence is within theprotein coding region of PNPLA3.

The target sequence may be from about 9-36 nucleotides in length, e.g.,about 15-30 nucleotides in length. For example, the target sequence canbe from about 15-30 nucleotides, 15-29, 15-28, 15-27, 15-26, 15-25,15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29,18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20, 19-30,19-29, 19-28, 19-27, 19-26, 19-25, 19-24, 19-23, 19-22, 19-21, 19-20,20-30, 20-29, 20-28, 20-27, 20-26, 20-25, 20-24, 20-23, 20-22, 20-21,21-30, 21-29, 21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22nucleotides in length. Ranges and lengths intermediate to the aboverecited ranges and lengths are also contemplated to be part of theinvention.

As used herein, the term “strand comprising a sequence” refers to anoligonucleotide comprising a chain of nucleotides that is described bythe sequence referred to using the standard nucleotide nomenclature.

“G,” “C,” “A,” “T” and “U” each generally stand for a nucleotide thatcontains guanine, cytosine, adenine, thymidine and uracil as a base,respectively. However, it will be understood that the term“ribonucleotide” or “nucleotide” can also refer to a modifiednucleotide, as further detailed below, or a surrogate replacement moiety(see, e.g., Table 2). The skilled person is well aware that guanine,cytosine, adenine, and uracil can be replaced by other moieties withoutsubstantially altering the base pairing properties of an oligonucleotidecomprising a nucleotide bearing such replacement moiety. For example,without limitation, a nucleotide comprising inosine as its base can basepair with nucleotides containing adenine, cytosine, or uracil. Hence,nucleotides containing uracil, guanine, or adenine can be replaced inthe nucleotide sequences of dsRNA featured in the invention by anucleotide containing, for example, inosine. In another example, adenineand cytosine anywhere in the oligonucleotide can be replaced withguanine and uracil, respectively to form G-U Wobble base pairing withthe target mRNA. Sequences containing such replacement moieties aresuitable for the compositions and methods featured in the invention.

The terms “iRNA”, “RNAi agent,” “iRNA agent,”, “RNA interference agent”as used interchangeably herein, refer to an agent that contains RNA asthat term is defined herein, and which mediates the targeted cleavage ofan RNA transcript via an RNA-induced silencing complex (RISC) pathway.iRNA directs the sequence-specific degradation of mRNA through a processknown as RNA interference (RNAi). The iRNA modulates, e.g., inhibits,the expression of a PNPLA3 gene in a cell, e.g., a cell within asubject, such as a mammalian subject.

In one embodiment, an RNAi agent of the invention includes a singlestranded RNAi that interacts with a target RNA sequence, e.g., a PNPLA3target mRNA sequence, to direct the cleavage of the target RNA. Withoutwishing to be bound by theory it is believed that long double strandedRNA introduced into cells is broken down into double stranded shortinterfering RNAs (siRNAs) comprising a sense strand and an antisensestrand by a Type III endonuclease known as Dicer (Sharp et al. (2001)Genes Dev. 15:485). Dicer, a ribonuclease-III-like enzyme, processesthese dsRNA into 19-23 base pair short interfering RNAs withcharacteristic two base 3′ overhangs (Bernstein, et al., (2001) Nature409:363). These siRNAs are then incorporated into an RNA-inducedsilencing complex (RISC) where one or more helicases unwind the siRNAduplex, enabling the complementary antisense strand to guide targetrecognition (Nykanen, et al., (2001) Cell 107:309). Upon binding to theappropriate target mRNA, one or more endonucleases within the RISCcleave the target to induce silencing (Elbashir, et al., (2001) GenesDev. 15:188). Thus, in one aspect the invention relates to a singlestranded RNA (ssRNA) (the antisense strand of an siRNA duplex) generatedwithin a cell and which promotes the formation of a RISC complex toeffect silencing of the target gene, i.e., a PNPLA3 gene. Accordingly,the term “siRNA” is also used herein to refer to an RNAi as describedabove.

In another embodiment, the RNAi agent may be a single-stranded RNA thatis introduced into a cell or organism to inhibit a target mRNA.Single-stranded RNAi agents bind to the RISC endonuclease, Argonaute 2,which then cleaves the target mRNA. The single-stranded siRNAs aregenerally 15-30 nucleotides and are chemically modified. The design andtesting of single-stranded RNAs are described in U.S. Pat. No. 8,101,348and in Lima et al., (2012) Cell 150:883-894, the entire contents of eachof which are hereby incorporated herein by reference. Any of theantisense nucleotide sequences described herein may be used as asingle-stranded siRNA as described herein or as chemically modified bythe methods described in Lima et al., (2012) Cell 150:883-894.

In another embodiment, an “iRNA” for use in the compositions, uses, andmethods of the invention is a double stranded RNA and is referred toherein as a “double stranded RNAi agent,” “double stranded RNA (dsRNA)molecule,” “dsRNA agent” or “dsRNA”. The term “dsRNA”, refers to acomplex of ribonucleic acid molecules, having a duplex structurecomprising two anti-parallel and substantially complementary nucleicacid strands, referred to as having “sense” and “antisense” orientationswith respect to a target RNA, i.e., an PNPLA3 gene. In some embodimentsof the invention, a double stranded RNA (dsRNA) triggers the degradationof a target RNA, e.g., an mRNA, through a post-transcriptionalgene-silencing mechanism referred to herein as RNA interference or RNAi.

In general, the majority of nucleotides of each strand of a dsRNAmolecule are ribonucleotides, but as described in detail herein, each orboth strands can also include one or more non-ribonucleotides, e.g., adeoxyribonucleotide and/or a modified nucleotide. In addition, as usedin this specification, an “RNAi agent” may include ribonucleotides withchemical modifications; an RNAi agent may include substantialmodifications at multiple nucleotides. As used herein, the term“modified nucleotide” refers to a nucleotide having, independently, amodified sugar moiety, a modified internucleotide linkage, and/ormodified nucleobase. Thus, the term modified nucleotide encompassessubstitutions, additions or removal of, e.g., a functional group oratom, to internucleoside linkages, sugar moieties, or nucleobases. Themodifications suitable for use in the agents of the invention includeall types of modifications disclosed herein or known in the art. Anysuch modifications, as used in a siRNA type molecule, are encompassed by“RNAi agent” for the purposes of this specification and claims.

The duplex region may be of any length that permits specific degradationof a desired target RNA through a RISC pathway, and may range from about9 to 36 base pairs in length, e.g., about 15-30 base pairs in length,for example, about 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21,22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, or 36 base pairsin length, such as about 15-30, 15-29, 15-28, 15-27, 15-26, 15-25,15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29,18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20, 19-30,19-29, 19-28, 19-27, 19-26, 19-25, 19-24, 19-23, 19-22, 19-21, 19-20,20-30, 20-29, 20-28, 20-27, 20-26, 20-25, 20-24, 20-23, 20-22, 20-21,21-30, 21-29, 21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22 basepairs in length. Ranges and lengths intermediate to the above recitedranges and lengths are also contemplated to be part of the invention.

The two strands forming the duplex structure may be different portionsof one larger RNA molecule, or they may be separate RNA molecules. Wherethe two strands are part of one larger molecule, and therefore areconnected by an uninterrupted chain of nucleotides between the 3′-end ofone strand and the 5′-end of the respective other strand forming theduplex structure, the connecting RNA chain is referred to as a “hairpinloop.” A hairpin loop can comprise at least one unpaired nucleotide. Insome embodiments, the hairpin loop can comprise at least 2, at least 3,at least 4, at least 5, at least 6, at least 7, at least 8, at least 9,at least 10, at least 20, at least 23 or more unpaired nucleotides. Insome embodiments, the hairpin loop can be 8 or fewer unpairednucleotides. In some embodiments, the hairpin loop can be 4-10 unpairednucleotides. In some embodiments, the hairpin loop can be 4-8nucleotides.

Where the two substantially complementary strands of a dsRNA arecomprised by separate RNA molecules, those molecules need not, but canbe covalently connected. Where the two strands are connected covalentlyby means other than an uninterrupted chain of nucleotides between the3′-end of one strand and the 5′-end of the respective other strandforming the duplex structure, the connecting structure is referred to asa “linker.” The RNA strands may have the same or a different number ofnucleotides. The maximum number of base pairs is the number ofnucleotides in the shortest strand of the dsRNA minus any overhangs thatare present in the duplex. In addition to the duplex structure, an RNAimay comprise one or more nucleotide overhangs.

In one embodiment, an RNAi agent of the invention is a dsRNA of 24-30nucleotides that interacts with a target RNA sequence, e.g., an PNPLA3target mRNA sequence, to direct the cleavage of the target RNA. Withoutwishing to be bound by theory, long double stranded RNA introduced intocells is broken down into siRNA by a Type III endonuclease known asDicer (Sharp et al. (2001) Genes Dev. 15:485). Dicer, aribonuclease-III-like enzyme, processes the dsRNA into 19-23 base pairshort interfering RNAs with characteristic two base 3′ overhangs(Bernstein, et al., (2001) Nature 409:363). The siRNAs are thenincorporated into an RNA-induced silencing complex (RISC) where one ormore helicases unwind the siRNA duplex, enabling the complementaryantisense strand to guide target recognition (Nykanen, et al., (2001)Cell 107:309). Upon binding to the appropriate target mRNA, one or moreendonucleases within the RISC cleave the target to induce silencing(Elbashir, et al., (2001) Genes Dev. 15:188).

As used herein, the term “nucleotide overhang” refers to at least oneunpaired nucleotide that protrudes from the duplex structure of an iRNA,e.g., a dsRNA. For example, when a 3′-end of one strand of a dsRNAextends beyond the 5′-end of the other strand, or vice versa, there is anucleotide overhang. A dsRNA can comprise an overhang of at least onenucleotide; alternatively the overhang can comprise at least twonucleotides, at least three nucleotides, at least four nucleotides, atleast five nucleotides or more. A nucleotide overhang can comprise orconsist of a nucleotide/nucleoside analog, including adeoxynucleotide/nucleoside. The overhang(s) can be on the sense strand,the antisense strand or any combination thereof. Furthermore, thenucleotide(s) of an overhang can be present on the 5′-end, 3′-end orboth ends of either an antisense or sense strand of a dsRNA.

In one embodiment, the antisense strand of a dsRNA has a 1-10nucleotide, e.g., a 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotide,overhang at the 3′-end and/or the 5′-end. In one embodiment, the sensestrand of a dsRNA has a 1-10 nucleotide, e.g., a 1, 2, 3, 4, 5, 6, 7, 8,9, or 10 nucleotide, overhang at the 3′-end and/or the 5′-end. Inanother embodiment, one or more of the nucleotides in the overhang isreplaced with a nucleoside thiophosphate. In certain embodiments, theoverhang on the sense strand or the antisense strand, or both, caninclude extended lengths longer than 10 nucleotides, e.g., 1-30nucleotides, 2-30 nucleotides, 10-30 nucleotides, or 10-15 nucleotidesin length. In certain embodiments, an extended overhang is on the sensestrand of the duplex. In certain embodiments, an extended overhang ispresent on the 3′end of the sense strand of the duplex. In certainembodiments, an extended overhang is present on the 5′end of the sensestrand of the duplex. In certain embodiments, an extended overhang is onthe antisense strand of the duplex. In certain embodiments, an extendedoverhang is present on the 3′end of the antisense strand of the duplex.In certain embodiments, an extended overhang is present on the 5′end ofthe antisense strand of the duplex. In certain embodiments, one or moreof the nucleotides in the overhang is replaced with a nucleosidethiophosphate.

“Blunt” or “blunt end” means that there are no unpaired nucleotides atthat end of the double stranded RNAi agent, i.e., no nucleotideoverhang. A “blunt ended” RNAi agent is a dsRNA that is double strandedover its entire length, i.e., no nucleotide overhang at either end ofthe molecule. The RNAi agents of the invention include RNAi agents withnucleotide overhangs at one end (i.e., agents with one overhang and oneblunt end) or with nucleotide overhangs at both ends. To be clear, a“blunt ended” dsRNA is a dsRNA that is blunt at both ends, i.e., nonucleotide overhang at either end of the molecule. Most often such amolecule will be double stranded over its entire length.

The term “antisense strand” or “guide strand” refers to the strand of aniRNA, e.g., a dsRNA, which includes a region that is substantiallycomplementary to a target sequence, e.g., a PNPLA3 mRNA. As used herein,the term “region of complementarity” refers to the region on theantisense strand that is substantially complementary to a sequence, forexample a target sequence, e.g., an PNPLA3 nucleotide sequence, asdefined herein. Where the region of complementarity is not fullycomplementary to the target sequence, the mismatches can be in theinternal or terminal regions of the molecule. Generally, the mosttolerated mismatches are in the terminal regions, e.g., within 5, 4, 3,2, or 1 nucleotides of the 5′- and/or 3′-terminus of the iRNA. In oneembodiment, a double stranded RNAi agent of the invention includes anucleotide mismatch in the antisense strand. In another embodiment, adouble stranded RNAi agent of the invention includea a nucleotidemismatch in the sense strand. In one embodiment, the nucleotide mismatchis, for example, within 5, 4, 3, 2, or 1 nucleotides from the3′-terminus of the iRNA. In another embodiment, the nucleotide mismatchis, for example, in the 3′-terminal nucleotide of the iRNA.

The term “sense strand,” or “passenger strand” as used herein, refers tothe strand of an iRNA that includes a region that is substantiallycomplementary to a region of the antisense strand as that term isdefined herein.

As used herein, the term “cleavage region” refers to a region that islocated immediately adjacent to the cleavage site. The cleavage site isthe site on the target at which cleavage occurs. In some embodiments,the cleavage region comprises three bases on either end of, andimmediately adjacent to, the cleavage site. In some embodiments, thecleavage region comprises two bases on either end of, and immediatelyadjacent to, the cleavage site. In some embodiments, the cleavage sitespecifically occurs at the site bound by nucleotides 10 and 11 of theantisense strand, and the cleavage region comprises nucleotides 11, 12and 13.

As used herein, and unless otherwise indicated, the term“complementary,” when used to describe a first nucleotide sequence inrelation to a second nucleotide sequence, refers to the ability of anoligonucleotide or polynucleotide comprising the first nucleotidesequence to hybridize and form a duplex structure under certainconditions with an oligonucleotide or polynucleotide comprising thesecond nucleotide sequence, as will be understood by the skilled person.Such conditions can, for example, be stringent conditions, wherestringent conditions can include: 400 mM NaCl, 40 mM PIPES pH 6.4, 1 mMEDTA, 50° C. or 70° C. for 12-16 hours followed by washing (see, e.g.,“Molecular Cloning: A Laboratory Manual, Sambrook, et al. (1989) ColdSpring Harbor Laboratory Press). Other conditions, such asphysiologically relevant conditions as can be encountered inside anorganism, can apply. The skilled person will be able to determine theset of conditions most appropriate for a test of complementarity of twosequences in accordance with the ultimate application of the hybridizednucleotides.

Complementary sequences within an iRNA, e.g., within a dsRNA asdescribed herein, include base-pairing of the oligonucleotide orpolynucleotide comprising a first nucleotide sequence to anoligonucleotide or polynucleotide comprising a second nucleotidesequence over the entire length of one or both nucleotide sequences.Such sequences can be referred to as “fully complementary” with respectto each other herein. However, where a first sequence is referred to as“substantially complementary” with respect to a second sequence herein,the two sequences can be fully complementary, or they can form one ormore, but generally not more than 5, 4, 3 or 2 mismatched base pairsupon hybridization for a duplex up to 30 base pairs, while retaining theability to hybridize under the conditions most relevant to theirultimate application, e.g., inhibition of gene expression via a RISCpathway. However, where two oligonucleotides are designed to form, uponhybridization, one or more single stranded overhangs, such overhangsshall not be regarded as mismatches with regard to the determination ofcomplementarity. For example, a dsRNA comprising one oligonucleotide 21nucleotides in length and another oligonucleotide 23 nucleotides inlength, wherein the longer oligonucleotide comprises a sequence of 21nucleotides that is fully complementary to the shorter oligonucleotide,can yet be referred to as “fully complementary” for the purposesdescribed herein.

“Complementary” sequences, as used herein, can also include, or beformed entirely from, non-Watson-Crick base pairs and/or base pairsformed from non-natural and modified nucleotides, in so far as the aboverequirements with respect to their ability to hybridize are fulfilled.Such non-Watson-Crick base pairs include, but are not limited to, G:UWobble or Hoogstein base pairing.

The terms “complementary,” “fully complementary” and “substantiallycomplementary” herein can be used with respect to the base matchingbetween the sense strand and the antisense strand of a dsRNA, or betweenthe antisense strand of an iRNA agent and a target sequence, as will beunderstood from the context of their use.

As used herein, a polynucleotide that is “substantially complementary toat least part of” a messenger RNA (mRNA) refers to a polynucleotide thatis substantially complementary to a contiguous portion of the mRNA ofinterest (e.g., an mRNA encoding a PNPLA3 gene). For example, apolynucleotide is complementary to at least a part of an PNPLA3 mRNA ifthe sequence is substantially complementary to a non-interrupted portionof an mRNA encoding a PNPLA3 gene.

Accordingly, in some embodiments, the antisense polynucleotidesdisclosed herein are fully complementary to the target PNPLA3 sequence.In other embodiments, the antisense polynucleotides disclosed herein aresubstantially complementary to the target PNPLA3 sequence and comprise acontiguous nucleotide sequence which is at least about 80% complementaryover its entire length to the equivalent region of the nucleotidesequence of SEQ ID NO:1, or a fragment of SEQ ID NO:1, such as about85%, about 86%, about 87%, about 88%, about 89%, about 90%, about % 91%,about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about98%, or about 99% complementary.

In one embodiment, an RNAi agent of the invention includes a sensestrand that is substantially complementary to an antisensepolynucleotide which, in turn, is complementary to a target PNPLA3sequence, and wherein the sense strand polynucleotide comprises acontiguous nucleotide sequence which is at least about 80% complementaryover its entire length to the equivalent region of the nucleotidesequence of SEQ ID NO:2, or, or a fragment of SEQ ID NO:2, such as about85%, about 86%, about 87%, about 88%, about 89%, about 90%, about % 91%,about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about98%, or about 99% complementary.

In another embodiment, an RNAi agent of the invention includes a sensestrand that is substantially complementary to an antisensepolynucleotide which, in turn, is complementary to a target PNPLA3sequence, and wherein the sense strand polynucleotide comprises acontiguous nucleotide sequence which is at least about 80% complementaryover its entire length to the equivalent region of the nucleotidesequence of any one of the sense strands in any one of Tables 3-5, 7,and 8, or a fragment of any one of the sense strands in any one ofTables 3-5, 7, and 8, such as about 85%, about 86%, about 87%, about88%, about 89%, about 90%, about % 91%, about 92%, about 93%, about 94%,about 95%, about 96%, about 97%, about 98%, or about 99% complementary.

In one aspect of the invention, an agent for use in the methods andcompositions of the invention is a single-stranded antisenseoligonucleotide molecule that inhibits a target mRNA via an antisenseinhibition mechanism. The single-stranded antisense oligonucleotidemolecule is complementary to a sequence within the target mRNA. Thesingle-stranded antisense oligonucleotides can inhibit translation in astoichiometric manner by base pairing to the mRNA and physicallyobstructing the translation machinery, see Dias, N. et al., (2002) MolCancer Ther 1:347-355. The single-stranded antisense oligonucleotidemolecule may be about 15 to about 30 nucleotides in length and have asequence that is complementary to a target sequence. For example, thesingle-stranded antisense oligonucleotide molecule may comprise asequence that is at least about 15, 16, 17, 18, 19, 20, or morecontiguous nucleotides from any one of the antisense sequences describedherein.

As used herein, a “subject” is an animal, such as a mammal, including aprimate (such as a human, a non-human primate, e.g., a monkey, and achimpanzee), a non-primate (such as a cow, a pig, a camel, a llama, ahorse, a goat, a rabbit, a sheep, a hamster, a guinea pig, a cat, a dog,a rat, a mouse, a horse, and a whale), or a bird (e.g., a duck or agoose). In an embodiment, the subject is a human, such as a human beingtreated or assessed for a disease, disorder or condition that wouldbenefit from reduction in PNPLA3 gene expression and/or replication; ahuman at risk for a disease, disorder or condition that would benefitfrom reduction in PNPLA3 gene expression; a human having a disease,disorder or condition that would benefit from reduction in PNPLA3 geneexpression; and/or human being treated for a disease, disorder orcondition that would benefit from reduction in PNPLA3 gene expression,as described herein. In one embodiment, the subject is a female human.In another embodiment, the subject is a male human.

As used herein, the terms “treating” or “treatment” refer to abeneficial or desired result including, but not limited to, alleviationor amelioration of one or more symptoms associated with PNPLA3 geneexpression and/or PNPLA3 protein production, e.g., the presence ofincreased protein activity in the hedgehog (Hh) signaling pathway, fattyliver (steatosis), nonalcoholic steatohepatitis (NASH), cirrhosis of theliver, accumulation of fat in the liver, inflammation of the liver,hepatocellular necrosis, liver fibrosis, obesity, or nonalcoholic fattyliver disease (NAFLD). “Treatment” can also mean prolonging survival ascompared to expected survival in the absence of treatment.

The term “lower” in the context of the level of PNPLA3 gene expressionand/or PNPLA3 protein production in a subject or a disease marker orsymptom refers to a statistically significant decrease in such level.The decrease can be, for example, at least 10%, at least 15%, at least20%, at least 25%, at least 30%, at least 35%, at least 40%, at least45%, at least 50%, at least 55%, at least 60%, at least 65%, at least70%, at least 75%, at least 80%, at least 85%, at least 90%, at least95%, or more and is preferably down to a level accepted as within therange of normal for an individual without such disorder.

As used herein, “prevention” or “preventing,” when used in reference toa disease, disorder or condition thereof, that would benefit from areduction in expression of an PNPLA3 gene and/or production of PNPLA3protein, refers to a reduction in the likelihood that a subject willdevelop a symptom associated with such a disease, disorder, orcondition, e.g., a symptom of PNPLA3 gene expression, such as thepresence of elevated levels of proteins in the hedgehog signalingpathway, fatty liver (steatosis), nonalcoholic steatohepatitis (NASH),cirrhosis of the liver, accumulation of fat in the liver, inflammationof the liver, hepatocellular necrosis, liver fibrosis, obesity, ornonalcoholic fatty liver disease (NAFLD). The failure to develop adisease, disorder or condition, or the reduction in the development of asymptom associated with such a disease, disorder or condition (e.g., byat least about 10% on a clinically accepted scale for that disease ordisorder), or the exhibition of delayed symptoms delayed (e.g., by days,weeks, months or years) is considered effective prevention.

As used herein, the term “Patatin-Like Phospholipase Domain Containing3-associated disease” or “PNPLA3-associated disease,” is a disease ordisorder that is caused by, or associated with PNPLA3 gene expression orPNPLA3 protein production. The term “PNPLA3-associated disease” includesa disease, disorder or condition that would benefit from a decrease inPNPLA3 gene expression, replication, or protein activity. Non-limitingexamples of PNPLA3-associated diseases include, for example, fatty liver(steatosis), nonalcoholic steatohepatitis (NASH), cirrhosis of theliver, accumulation of fat in the liver, inflammation of the liver,hepatocellular necrosis, liver fibrosis, obesity, or nonalcoholic fattyliver disease (NAFLD). In another embodiment, the PNPLA3-associateddisease is nonalcoholic fatty liver disease (NAFLD). In anotherembodiment, the PNPLA3-associated disease is nonalcoholicsteatohepatitis (NASH). In another embodiment, the PNPLA3-associateddisease is liver cirrhosis. In another embodiment, the PNPLA3-associateddisease is insulin resistance. In another embodiment, thePNPLA3-associated disease is not insulin resistance. In one embodiment,the PNPLA3-associated disease is obesity.

In one embodiment, an PNPLA3-associated disease is nonalcoholic fattyliver disease (NAFLD). As used herein, “nonalcoholic fatty liverdisease,” used interchangeably with the term “NAFLD,” refers to adisease defined by the presence of macrovascular steatosis in thepresence of less than 20 gm of alcohol ingestion per day. NAFLD is themost common liver disease in the United States, and is commonlyassociated with insulin resistance/type 2 diabetes mellitus and obesity.NAFLD is manifested by steatosis, steatohepatitis, cirrhosis, andsometimes hepatocellaular carcinoma. For a review of NAFLD, see Tolmanand Dalpiaz (2007) Ther. Clin. Risk. Manag., 3(6):1153-1163 the entirecontents of which are incorporated herein by reference.

“Therapeutically effective amount,” as used herein, is intended toinclude the amount of an RNAi agent that, when administered to a patientfor treating a subject having PNPLA3-associated disease, is sufficientto effect treatment of the disease (e.g., by diminishing, amelioratingor maintaining the existing disease or one or more symptoms of disease).The “therapeutically effective amount” may vary depending on the RNAiagent, how the agent is administered, the disease and its severity andthe history, age, weight, family history, genetic makeup, stage ofpathological processes mediated by PNPLA3 gene expression, the types ofpreceding or concomitant treatments, if any, and other individualcharacteristics of the patient to be treated.

“Prophylactically effective amount,” as used herein, is intended toinclude the amount of an RNAi agent that, when administered to a subjectwho does not yet experience or display symptoms of a PNPLA3-associateddisease, but who may be predisposed, is sufficient to prevent orameliorate the disease or one or more symptoms of the disease.Ameliorating the disease includes slowing the course of the disease orreducing the severity of later-developing disease. The “prophylacticallyeffective amount” may vary depending on the RNAi agent, how the agent isadministered, the degree of risk of disease, and the history, age,weight, family history, genetic makeup, the types of preceding orconcomitant treatments, if any, and other individual characteristics ofthe patient to be treated.

A “therapeutically-effective amount” or “prophylacticaly effectiveamount” also includes an amount of an RNAi agent that produces somedesired local or systemic effect at a reasonable benefit/risk ratioapplicable to any treatment. RNAi agents employed in the methods of thepresent invention may be administered in a sufficient amount to producea reasonable benefit/risk ratio applicable to such treatment.

The phrase “pharmaceutically acceptable” is employed herein to refer tothose compounds, materials, compositions, and/or dosage forms which are,within the scope of sound medical judgment, suitable for use in contactwith the tissues of human subjects and animal subjects without excessivetoxicity, irritation, allergic response, or other problem orcomplication, commensurate with a reasonable benefit/risk ratio.

The phrase “pharmaceutically-acceptable carrier” as used herein means apharmaceutically-acceptable material, composition or vehicle, such as aliquid or solid filler, diluent, excipient, manufacturing aid (e.g.,lubricant, talc magnesium, calcium or zinc stearate, or steric acid), orsolvent encapsulating material, involved in carrying or transporting thesubject compound from one organ, or portion of the body, to anotherorgan, or portion of the body. Each carrier must be “acceptable” in thesense of being compatible with the other ingredients of the formulationand not injurious to the subject being treated. Some examples ofmaterials which can serve as pharmaceutically-acceptable carriersinclude: (1) sugars, such as lactose, glucose and sucrose; (2) starches,such as corn starch and potato starch; (3) cellulose, and itsderivatives, such as sodium carboxymethyl cellulose, ethyl cellulose andcellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7)lubricating agents, such as magnesium state, sodium lauryl sulfate andtalc; (8) excipients, such as cocoa butter and suppository waxes; (9)oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil,olive oil, corn oil and soybean oil; (10) glycols, such as propyleneglycol; (11) polyols, such as glycerin, sorbitol, mannitol andpolyethylene glycol; (12) esters, such as ethyl oleate and ethyllaurate; (13) agar; (14) buffering agents, such as magnesium hydroxideand aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17)isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) pHbuffered solutions; (21) polyesters, polycarbonates and/orpolyanhydrides; (22) bulking agents, such as polypeptides and aminoacids (23) serum component, such as serum albumin, HDL and LDL; and (22)other non-toxic compatible substances employed in pharmaceuticalformulations.

The term “sample,” as used herein, includes a collection of similarfluids, cells, or tissues isolated from a subject, as well as fluids,cells, or tissues present within a subject. Examples of biologicalfluids include blood, serum and serosal fluids, plasma, cerebrospinalfluid, ocular fluids, lymph, urine, saliva, and the like. Tissue samplesmay include samples from tissues, organs or localized regions. Forexample, samples may be derived from particular organs, parts of organs,or fluids or cells within those organs. In certain embodiments, samplesmay be derived from the liver (e.g., whole liver or certain segments ofliver or certain types of cells in the liver, such as, e.g.,hepatocytes), the retina or parts of the retina (e.g., retinal pigmentepithelium), the central nervous system or parts of the central nervoussystem (e.g., ventricles or choroid plexus), or the pancreas or certaincells or parts of the pancreas. In some embodiments, a “sample derivedfrom a subject” refers tocerebrospinal fluid obtained from the subject.In preferred embodiments, a “sample derived from a subject” refers toblood or plasma drawn from the subject. In further embodiments, a“sample derived from a subject” refers to liver tissue (or subcomponentsthereof) or retinal tissue (or subcomponents thereof) derived from thesubject.

II. iRNAs of the Invention

The present invention provides iRNAs which inhibit the expression of aPNPLA3 gene. In one embodiment, the iRNA agent includes double strandedribonucleic acid (dsRNA) molecules for inhibiting the expression of aPNPLA3 gene in a cell, such as a cell within a subject, e.g., a mammal,such as a human having an PNPLA3-associated disease, e.g., nonalcoholicfatty liver disease (NAFLD). The dsRNA includes an antisense strandhaving a region of complementarity which is complementary to at least apart of an mRNA formed in the expression of an PNPLA3 gene. The regionof complementarity is about 30 nucleotides or less in length (e.g.,about 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, or 18 nucleotidesor less in length). Upon contact with a cell expressing the PNPLA3 gene,the iRNA inhibits the expression of the PNPLA3 gene (e.g., a human, aprimate, a non-primate, or a bird PNPLA3 gene) by at least about 10% asassayed by, for example, a PCR or branched DNA (bDNA)-based method, orby a protein-based method, such as by immunofluorescence analysis,using, for example, Western Blotting or flowcytometric techniques.

A dsRNA includes two RNA strands that are complementary and hybridize toform a duplex structure under conditions in which the dsRNA will beused. One strand of a dsRNA (the antisense strand) includes a region ofcomplementarity that is substantially complementary, and generally fullycomplementary, to a target sequence. The target sequence can be derivedfrom the sequence of an mRNA formed during the expression of an PNPLA3gene. The other strand (the sense strand) includes a region that iscomplementary to the antisense strand, such that the two strandshybridize and form a duplex structure when combined under suitableconditions. As described elsewhere herein and as known in the art, thecomplementary sequences of a dsRNA can also be contained asself-complementary regions of a single nucleic acid molecule, as opposedto being on separate oligonucleotides.

Generally, the duplex structure is between 15 and 30 base pairs inlength, e.g., between, 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23,15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27,18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20, 19-30, 19-29, 19-28,19-27, 19-26, 19-25, 19-24, 19-23, 19-22, 19-21, 19-20, 20-30, 20-29,20-28, 20-27, 20-26, 20-25, 20-24, 20-23, 20-22, 20-21, 21-30, 21-29,21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22 base pairs in length.Ranges and lengths intermediate to the above recited ranges and lengthsare also contemplated to be part of the invention.

Similarly, the region of complementarity to the target sequence isbetween 15 and 30 nucleotides in length, e.g., between 15-29, 15-28,15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18,15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22,18-21, 18-20, 19-30, 19-29, 19-28, 19-27, 19-26, 19-25, 19-24, 19-23,19-22, 19-21, 19-20, 20-30, 20-29, 20-28, 20-27, 20-26, 20-25, 20-24,20-23, 20-22, 20-21, 21-30, 21-29, 21-28, 21-27, 21-26, 21-25, 21-24,21-23, or 21-22 nucleotides in length. Ranges and lengths intermediateto the above recited ranges and lengths are also contemplated to be partof the invention.

In some embodiments, the dsRNA is between about 15 and about 23nucleotides in length, or between about 25 and about 30 nucleotides inlength. In general, the dsRNA is long enough to serve as a substrate forthe Dicer enzyme. For example, it is well-known in the art that dsRNAslonger than about 21-23 nucleotides in length may serve as substratesfor Dicer. As the ordinarily skilled person will also recognize, theregion of an RNA targeted for cleavage will most often be part of alarger RNA molecule, often an mRNA molecule. Where relevant, a “part” ofan mRNA target is a contiguous sequence of an mRNA target of sufficientlength to allow it to be a substrate for RNAi-directed cleavage (i.e.,cleavage through a RISC pathway).

One of skill in the art will also recognize that the duplex region is aprimary functional portion of a dsRNA, e.g., a duplex region of about 9to 36 base pairs, e.g., about 10-36, 11-36, 12-36, 13-36, 14-36, 15-36,9-35, 10-35, 11-35, 12-35, 13-35, 14-35, 15-35, 9-34, 10-34, 11-34,12-34, 13-34, 14-34, 15-34, 9-33, 10-33, 11-33, 12-33, 13-33, 14-33,15-33, 9-32, 10-32, 11-32, 12-32, 13-32, 14-32, 15-32, 9-31, 10-31,11-31, 12-31, 13-32, 14-31, 15-31, 15-30, 15-29, 15-28, 15-27, 15-26,15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30,18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20,19-30, 19-29, 19-28, 19-27, 19-26, 19-25, 19-24, 19-23, 19-22, 19-21,19-20, 20-30, 20-29, 20-28, 20-27, 20-26, 20-25, 20-24, 20-23, 20-22,20-21, 21-30, 21-29, 21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22base pairs. Thus, in one embodiment, to the extent that it becomesprocessed to a functional duplex, of e.g., 15-30 base pairs, thattargets a desired RNA for cleavage, an RNA molecule or complex of RNAmolecules having a duplex region greater than 30 base pairs is a dsRNA.Thus, an ordinarily skilled artisan will recognize that in oneembodiment, a miRNA is a dsRNA. In another embodiment, a dsRNA is not anaturally occurring miRNA. In another embodiment, an iRNA agent usefulto target PNPLA3 gene expression is not generated in the target cell bycleavage of a larger dsRNA.

A dsRNA as described herein can further include one or moresingle-stranded nucleotide overhangs e.g., 1, 2, 3, or 4 nucleotides.dsRNAs having at least one nucleotide overhang can have unexpectedlysuperior inhibitory properties relative to their blunt-endedcounterparts. A nucleotide overhang can comprise or consist of anucleotide/nucleoside analog, including a deoxynucleotide/nucleoside.The overhang(s) can be on the sense strand, the antisense strand or anycombination thereof. Furthermore, the nucleotide(s) of an overhang canbe present on the 5′-end, 3′-end or both ends of either an antisense orsense strand of a dsRNA.

A dsRNA can be synthesized by standard methods known in the art asfurther discussed below, e.g., by use of an automated DNA synthesizer,such as are commercially available from, for example, Biosearch, AppliedBiosystems, Inc.

iRNA compounds of the invention may be prepared using a two-stepprocedure. First, the individual strands of the double stranded RNAmolecule are prepared separately. Then, the component strands areannealed. The individual strands of the siRNA compound can be preparedusing solution-phase or solid-phase organic synthesis or both. Organicsynthesis offers the advantage that the oligonucleotide strandscomprising unnatural or modified nucleotides can be easily prepared.Single-stranded oligonucleotides of the invention can be prepared usingsolution-phase or solid-phase organic synthesis or both.

In one aspect, a dsRNA of the invention includes at least two nucleotidesequences, a sense sequence and an anti-sense sequence. The sense strandis selected from the group of sequences provided in any one of Tables3-5, 7, and 8, and the corresponding antisense strand of the sensestrand is selected from the group of sequences of any one of Tables 3-5,7, and 8. In this aspect, one of the two sequences is complementary tothe other of the two sequences, with one of the sequences beingsubstantially complementary to a sequence of an mRNA generated in theexpression of an PNPLA3 gene. As such, in this aspect, a dsRNA willinclude two oligonucleotides, where one oligonucleotide is described asthe sense strand in any one of Tables 3-5, 7, and 8, and the secondoligonucleotide is described as the corresponding antisense strand ofthe sense strand in any one of Tables 3-5, 7, and 8. In one embodiment,the substantially complementary sequences of the dsRNA are contained onseparate oligonucleotides. In another embodiment, the substantiallycomplementary sequences of the dsRNA are contained on a singleoligonucleotide.

It will be understood that, although the sequences in any one of Tables3, 4, and 7 are not described as modified and/or conjugated sequences,the RNA of the iRNA of the invention e.g., a dsRNA of the invention, maycomprise any one of the sequences set forth in any one of Tables 3-5, 7,and 8, or the sequences of any one of Tables 3-5, 7, and 8 that aremodified, or the sequences of any one of Tables 3-5, 7, and 8 that areconjugated. In other words, the invention encompasses dsRNA of any oneof Tables 3-5, 7, and 8 which are unmodified, un-conjugated, modified,and/or conjugated, as described herein.

In another aspect, a double stranded ribonucleic acid (dsRNA) of theinvention for inhibiting expression of PNPLA3 comprises, consistsessentially of, or consists of a sense strand and an antisense strand,wherein the sense strand comprises the nucleotide sequence of a sensestrand in any one of Tables 3-5, 7, and 8 and the antisense strandcomprises the nucleotide sequence of the corresponding antisense strandin any one of Tables 3-5, 7, and 8.

The skilled person is well aware that dsRNAs having a duplex structureof between about 20 and 23 base pairs, e.g., 21, base pairs have beenhailed as particularly effective in inducing RNA interference (Elbashiret al., EMBO 2001, 20:6877-6888). However, others have found thatshorter or longer RNA duplex structures can also be effective (Chu andRana (2007) RNA 14:1714-1719; Kim et al. (2005) Nat Biotech 23:222-226).In the embodiments described above, by virtue of the nature of theoligonucleotide sequences provided in any one of Table 3-5, 7, and 8,dsRNAs described herein can include at least one strand of a length ofminimally 21 nucleotides. It can be reasonably expected that shorterduplexes having one of the sequences of any one of Tables 3-5, 7, and 8minus only a few nucleotides on one or both ends can be similarlyeffective as compared to the dsRNAs described above. Hence, dsRNAshaving a sequence of at least 15, 16, 17, 18, 19, 20, or more contiguousnucleotides derived from one of the sequences of Tany one of Tables 3-5,7, and 8, and differing in their ability to inhibit the expression of aPNPLA3 gene by not more than about 5, 10, 15, 20, 25, or 30% inhibitionfrom a dsRNA comprising the full sequence, are contemplated to be withinthe scope of the present invention.

In addition, the RNAs provided in any one of Tables 3-5, 7, and 8identify a site(s) in a PNPLA3 transcript that is susceptible toRISC-mediated cleavage (see, e.g., Table 9). As such, the presentinvention further features iRNAs that target within one of these sites.As used herein, an iRNA is said to target within a particular site of anRNA transcript if the iRNA promotes cleavage of the transcript anywherewithin that particular site. Such an iRNA will generally include atleast about 15 contiguous nucleotides from one of the sequences providedin any one of Tables 3-5, 7, and 8 coupled to additional nucleotidesequences taken from the region contiguous to the selected sequence in aPNPLA3 gene.

While a target sequence is generally about 15-30 nucleotides in length,there is wide variation in the suitability of particular sequences inthis range for directing cleavage of any given target RNA. Varioussoftware packages and the guidelines set out herein provide guidance forthe identification of optimal target sequences for any given genetarget, but an empirical approach can also be taken in which a “window”or “mask” of a given size (as a non-limiting example, 21 nucleotides) isliterally or figuratively (including, e.g., in silico) placed on thetarget RNA sequence to identify sequences in the size range that canserve as target sequences. By moving the sequence “window” progressivelyone nucleotide upstream or downstream of an initial target sequencelocation, the next potential target sequence can be identified, untilthe complete set of possible sequences is identified for any giventarget size selected. Thus, while the sequences identified, for example,in any one of Tables 3-5, 7, and 8 represent effective target sequences,it is contemplated that further optimization of inhibition efficiencycan be achieved by progressively “walking the window” one nucleotideupstream or downstream of the given sequences to identify sequences withequal or better inhibition characteristics.

Further, it is contemplated that for any sequence identified, e.g., inany one of Tables 3-5, 7, and 8, further optimization could be achievedby systematically either adding or removing nucleotides to generatelonger or shorter sequences and testing those sequences generated bywalking a window of the longer or shorter size up or down the target RNAfrom that point. Again, coupling this approach to generating newcandidate targets with testing for effectiveness of iRNAs based on thosetarget sequences in an inhibition assay as known in the art and/or asdescribed herein can lead to further improvements in the efficiency ofinhibition. Further still, such optimized sequences can be adjusted by,e.g., the introduction of modified nucleotides as described herein or asknown in the art, addition or changes in overhang, or othermodifications as known in the art and/or discussed herein to furtheroptimize the molecule (e.g., increasing serum stability or circulatinghalf-life, increasing thermal stability, enhancing transmembranedelivery, targeting to a particular location or cell type, increasinginteraction with silencing pathway enzymes, increasing release fromendosomes) as an expression inhibitor.

An iRNA as described herein can contain one or more mismatches to thetarget sequence. In one embodiment, an iRNA as described herein containsno more than 3 mismatches. If the antisense strand of the iRNA containsmismatches to a target sequence, it is preferable that the area ofmismatch is not located in the center of the region of complementarity.If the antisense strand of the iRNA contains mismatches to the targetsequence, it is preferable that the mismatch be restricted to be withinthe last 5 nucleotides from either the 5′- or 3′-end of the region ofcomplementarity. For example, for a 23 nucleotide iRNA agent the strandwhich is complementary to a region of an PNPLA3 gene, generally does notcontain any mismatch within the central 13 nucleotides. The methodsdescribed herein or methods known in the art can be used to determinewhether an iRNA containing a mismatch to a target sequence is effectivein inhibiting the expression of an PNPLA3 gene. Consideration of theefficacy of iRNAs with mismatches in inhibiting expression of an PNPLA3gene is important, especially if the particular region ofcomplementarity in an PNPLA3 gene is known to have polymorphic sequencevariation within the population.

III. Modified iRNAs of the Invention

In one embodiment, the RNA of the iRNA of the invention e.g., a dsRNA,is unmodified, and does not comprise, e.g., chemical modificationsand/or conjugations known in the art and described herein. In anotherembodiment, the RNA of an iRNA of the invention, e.g., a dsRNA, ischemically modified to enhance stability or other beneficialcharacteristics. In certain embodiments of the invention, substantiallyall of the nucleotides of an iRNA of the invention are modified. Inother embodiments of the invention, all of the nucleotides of an iRNA ofthe invention are modified iRNAs of the invention in which“substantially all of the nucleotides are modified” are largely but notwholly modified and can include not more than 5, 4, 3, 2, or 1unmodified nucleotides.

The nucleic acids featured in the invention can be synthesized and/ormodified by methods well established in the art, such as those describedin “Current protocols in nucleic acid chemistry,” Beaucage, S. L. et al.(Edrs.), John Wiley & Sons, Inc., New York, N.Y., USA, which is herebyincorporated herein by reference. Modifications include, for example,end modifications, e.g., 5′-end modifications (phosphorylation,conjugation, inverted linkages) or 3′-end modifications (conjugation,DNA nucleotides, inverted linkages, etc.); base modifications, e.g.,replacement with stabilizing bases, destabilizing bases, or bases thatbase pair with an expanded repertoire of partners, removal of bases(abasic nucleotides), or conjugated bases; sugar modifications (e.g., atthe 2′-position or 4′-position) or replacement of the sugar; and/orbackbone modifications, including modification or replacement of thephosphodiester linkages. Specific examples of iRNA compounds useful inthe embodiments described herein include, but are not limited to RNAscontaining modified backbones or no natural internucleoside linkages.RNAs having modified backbones include, among others, those that do nothave a phosphorus atom in the backbone. For the purposes of thisspecification, and as sometimes referenced in the art, modified RNAsthat do not have a phosphorus atom in their internucleoside backbone canalso be considered to be oligonucleosides. In some embodiments, amodified iRNA will have a phosphorus atom in its internucleosidebackbone.

Modified RNA backbones include, for example, phosphorothioates, chiralphosphorothioates, phosphorodithioates, phosphotriesters,aminoalkylphosphotriesters, methyl and other alkyl phosphonatesincluding 3′-alkylene phosphonates and chiral phosphonates,phosphinates, phosphoramidates including 3′-amino phosphoramidate andaminoalkylphosphoramidates, thionophosphoramidates,thionoalkylphosphonates, thionoalkylphosphotriesters, andboranophosphates having normal 3′-5′ linkages, 2′-5′-linked analogs ofthese, and those having inverted polarity wherein the adjacent pairs ofnucleoside units are linked 3′-5′ to 5′-3′ or 2′-5′ to 5′-2′. Varioussalts, mixed salts and free acid forms are also included.

Representative U.S. patents that teach the preparation of the abovephosphorus-containing linkages include, but are not limited to, U.S.Pat. Nos. 3,687,808; 4,469,863; 4,476,301; 5,023,243; 5,177,195;5,188,897; 5,264,423; 5,276,019; 5,278,302; 5,286,717; 5,321,131;5,399,676; 5,405,939; 5,453,496; 5,455,233; 5,466,677; 5,476,925;5,519,126; 5,536,821; 5,541,316; 5,550,111; 5,563,253; 5,571,799;5,587,361; 5,625,050; 6,028,188; 6,124,445; 6,160,109; 6,169,170;6,172,209; 6,239,265; 6,277,603; 6,326,199; 6,346,614; 6,444,423;6,531,590; 6,534,639; 6,608,035; 6,683,167; 6,858,715; 6,867,294;6,878,805; 7,015,315; 7,041,816; 7,273,933; 7,321,029; and U.S. Pat.RE39464, the entire contents of each of which are hereby incorporatedherein by reference.

Modified RNA backbones that do not include a phosphorus atom thereinhave backbones that are formed by short chain alkyl or cycloalkylinternucleoside linkages, mixed heteroatoms and alkyl or cycloalkylinternucleoside linkages, or one or more short chain heteroatomic orheterocyclic internucleoside linkages. These include those havingmorpholino linkages (formed in part from the sugar portion of anucleoside); siloxane backbones; sulfide, sulfoxide and sulfonebackbones; formacetyl and thioformacetyl backbones; methylene formacetyland thioformacetyl backbones; alkene containing backbones; sulfamatebackbones; methyleneimino and methylenehydrazino backbones; sulfonateand sulfonamide backbones; amide backbones; and others having mixed N,O, S and CH₂ component parts.

Representative U.S. patents that teach the preparation of the aboveoligonucleosides include, but are not limited to, U.S. Pat. Nos.5,034,506; 5,166,315; 5,185,444; 5,214,134; 5,216,141; 5,235,033;5,64,562; 5,264,564; 5,405,938; 5,434,257; 5,466,677; 5,470,967;5,489,677; 5,541,307; 5,561,225; 5,596,086; 5,602,240; 5,608,046;5,610,289; 5,618,704; 5,623,070; 5,663,312; 5,633,360; 5,677,437; and,5,677,439, the entire contents of each of which are hereby incorporatedherein by reference.

In other embodiments, suitable RNA mimetics are contemplated for use iniRNAs, in which both the sugar and the internucleoside linkage, i.e.,the backbone, of the nucleotide units are replaced with novel groups.The base units are maintained for hybridization with an appropriatenucleic acid target compound. One such oligomeric compound, an RNAmimetic that has been shown to have excellent hybridization properties,is referred to as a peptide nucleic acid (PNA). In PNA compounds, thesugar backbone of an RNA is replaced with an amide containing backbone,in particular an aminoethylglycine backbone. The nucleobases areretained and are bound directly or indirectly to aza nitrogen atoms ofthe amide portion of the backbone. Representative U.S. patents thatteach the preparation of PNA compounds include, but are not limited to,U.S. Pat. Nos. 5,539,082; 5,714,331; and 5,719,262, the entire contentsof each of which are hereby incorporated herein by reference. AdditionalPNA compounds suitable for use in the iRNAs of the invention aredescribed in, for example, in Nielsen et al., Science, 1991, 254,1497-1500.

Some embodiments featured in the invention include RNAs withphosphorothioate backbones and oligonucleosides with heteroatombackbones, and in particular —CH₂—NH—CH₂—, —CH₂—N(CH₃)—O—CH₂— [known asa methylene (methylimino) or MMI backbone], —CH₂—O—N(CH₃)—CH₂—,—CH₂—N(CH₃)—N(CH₃)—CH₂— and —N(CH₃)—CH₂—CH₂— [wherein the nativephosphodiester backbone is represented as —O—P—O—CH₂—] of theabove-referenced U.S. Pat. No. 5,489,677, and the amide backbones of theabove-referenced U.S. Pat. No. 5,602,240. In some embodiments, the RNAsfeatured herein have morpholino backbone structures of theabove-referenced U.S. Pat. No. 5,034,506.

Modified RNAs can also contain one or more substituted sugar moieties.The iRNAs, e.g., dsRNAs, featured herein can include one of thefollowing at the 2′-position: OH; F; O-, S-, or N-alkyl; O-, S-, orN-alkenyl; O-, S- or N-alkynyl; or O-alkyl-O-alkyl, wherein the alkyl,alkenyl and alkynyl can be substituted or unsubstituted C₁ to C₁₀ alkylor C₂ to C₁₀ alkenyl and alkynyl. Exemplary suitable modificationsinclude O[(CH₂)_(n)O]_(m)CH₃, O(CH₂)._(n)OCH₃, O(CH₂)_(n)NH₂,O(CH₂)_(n)CH₃, O(CH₂)_(n)ONH₂, and O(CH₂)_(n)ON[(CH₂)_(n)CH₃)]₂, where nand m are from 1 to about 10. In other embodiments, dsRNAs include oneof the following at the 2′ position: C₁ to C₁₀ lower alkyl, substitutedlower alkyl, alkaryl, aralkyl, O-alkaryl or O-aralkyl, SH, SCH₃, OCN,Cl, Br, CN, CF₃, OCF₃, SOCH₃, SO₂CH₃, ONO₂, NO₂, N₃, NH₂,heterocycloalkyl, heterocycloalkaryl, aminoalkylamino, polyalkylamino,substituted silyl, an RNA cleaving group, a reporter group, anintercalator, a group for improving the pharmacokinetic properties of aniRNA, or a group for improving the pharmacodynamic properties of aniRNA, and other substituents having similar properties. In someembodiments, the modification includes a 2′-methoxyethoxy(2′-O—CH₂CH₂OCH₃, also known as 2′-O-(2-methoxyethyl) or 2′-MOE) (Martinet al., Helv. Chim. Acta, 1995, 78:486-504) i.e., an alkoxy-alkoxygroup. Another exemplary modification is 2′-dimethylaminooxyethoxy,i.e., a O(CH₂)₂ON(CH₃)₂ group, also known as 2′-DMAOE, and2′-dimethylaminoethoxyethoxy (also known in the art as2′-O-dimethylaminoethoxyethyl or 2′-DMAEOE), i.e.,2′-O—CH₂—O—CH₂—N(CH₂)₂.

Other modifications include 2′-methoxy (2′-OCH₃), 2′-aminopropoxy(2′-OCH₂CH₂CH₂NH₂) and 2′-fluoro (2′-F) Similar modifications can alsobe made at other positions on the RNA of an iRNA, particularly the 3′position of the sugar on the 3′ terminal nucleotide or in 2′-5′ linkeddsRNAs and the 5′ position of 5′ terminal nucleotide. iRNAs can alsohave sugar mimetics such as cyclobutyl moieties in place of thepentofuranosyl sugar. Representative U.S. patents that teach thepreparation of such modified sugar structures include, but are notlimited to, U.S. Pat. Nos. 4,981,957; 5,118,800; 5,319,080; 5,359,044;5,393,878; 5,446,137; 5,466,786; 5,514,785; 5,519,134; 5,567,811;5,576,427; 5,591,722; 5,597,909; 5,610,300; 5,627,053; 5,639,873;5,646,265; 5,658,873; 5,670,633; and 5,700,920, certain of which arecommonly owned with the instant application. The entire contents of eachof the foregoing are hereby incorporated herein by reference.

An iRNA can also include nucleobase (often referred to in the art simplyas “base”) modifications or substitutions. As used herein, “unmodified”or “natural” nucleobases include the purine bases adenine (A) andguanine (G), and the pyrimidine bases thymine (T), cytosine (C) anduracil (U). Modified nucleobases include other synthetic and naturalnucleobases such as deoxy-thymine (dT), 5-methylcytosine (5-me-C),5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine,6-methyl and other alkyl derivatives of adenine and guanine, 2-propyland other alkyl derivatives of adenine and guanine, 2-thiouracil,2-thiothymine and 2-thiocytosine, 5-halouracil and cytosine, 5-propynyluracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil(pseudouracil), 4-thiouracil, 8-halo, 8-amino, 8-thiol, 8-thioalkyl,8-hydroxyl anal other 8-substituted adenines and guanines, 5-halo,particularly 5-bromo, 5-trifluoromethyl and other 5-substituted uracilsand cytosines, 7-methylguanine and 7-methyladenine, 8-azaguanine and8-azaadenine, 7-deazaguanine and 7-daazaadenine and 3-deazaguanine and3-deazaadenine. Further nucleobases include those disclosed in U.S. Pat.No. 3,687,808, those disclosed in Modified Nucleosides in Biochemistry,Biotechnology and Medicine, Herdewijn, P. ed. Wiley-VCH, 2008; thosedisclosed in The Concise Encyclopedia Of Polymer Science AndEngineering, pages 858-859, Kroschwitz, J. L, ed. John Wiley & Sons,1990, these disclosed by Englisch et al., Angewandte Chemie,International Edition, 1991, 30, 613, and those disclosed by Sanghvi, YS., Chapter 15, dsRNA Research and Applications, pages 289-302, Crooke,S. T. and Lebleu, B., Ed., CRC Press, 1993. Certain of these nucleobasesare particularly useful for increasing the binding affinity of theoligomeric compounds featured in the invention. These include5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and 0-6substituted purines, including 2-aminopropyladenine, 5-propynyluraciland 5-propynylcytosine. 5-methylcytosine substitutions have been shownto increase nucleic acid duplex stability by 0.6-1.2° C. (Sanghvi, Y.S., Crooke, S. T. and Lebleu, B., Eds., dsRNA Research and Applications,CRC Press, Boca Raton, 1993, pp. 276-278) and are exemplary basesubstitutions, even more particularly when combined with2′-O-methoxyethyl sugar modifications.

Representative U.S. patents that teach the preparation of certain of theabove noted modified nucleobases as well as other modified nucleobasesinclude, but are not limited to, the above noted U.S. Pat. Nos.3,687,808, 4,845,205; 5,130,30; 5,134,066; 5,175,273; 5,367,066;5,432,272; 5,457,187; 5,459,255; 5,484,908; 5,502,177; 5,525,711;5,552,540; 5,587,469; 5,594,121, 5,596,091; 5,614,617; 5,681,941;5,750,692; 6,015,886; 6,147,200; 6,166,197; 6,222,025; 6,235,887;6,380,368; 6,528,640; 6,639,062; 6,617,438; 7,045,610; 7,427,672; and7,495,088, the entire contents of each of which are hereby incorporatedherein by reference.

The RNA of an iRNA can also be modified to include one or more bicyclicsugar moities. A “bicyclic sugar” is a furanosyl ring modified by thebridging of two atoms. A “bicyclic nucleoside” (“BNA”) is a nucleosidehaving a sugar moiety comprising a bridge connecting two carbon atoms ofthe sugar ring, thereby forming a bicyclic ring system. In certainembodiments, the bridge connects the 4′-carbon and the 2′-carbon of thesugar ring. Thus, in some embodiments an agent of the invention mayinclude one or more locked nucleic acids (LNA). A locked nucleic acid isa nucleotide having a modified ribose moiety in which the ribose moietycomprises an extra bridge connecting the 2′ and 4′ carbons. In otherwords, an LNA is a nucleotide comprising a bicyclic sugar moietycomprising a 4′-CH2-O-2′ bridge. This structure effectively “locks” theribose in the 3′-endo structural conformation. The addition of lockednucleic acids to siRNAs has been shown to increase siRNA stability inserum, and to reduce off-target effects (Elmen, J. et al., (2005)Nucleic Acids Research 33(1):439-447; Mook, O R. et al., (2007) Mol CancTher 6(3):833-843; Grunweller, A. et al., (2003) Nucleic Acids Research31(12):3185-3193). Examples of bicyclic nucleosides for use in thepolynucleotides of the invention include without limitation nucleosidescomprising a bridge between the 4′ and the 2′ ribosyl ring atoms. Incertain embodiments, the antisense polynucleotide agents of theinvention include one or more bicyclic nucleosides comprising a 4′ to 2′bridge. Examples of such 4′ to 2′ bridged bicyclic nucleosides, includebut are not limited to 4′-(CH2)-O-2′ (LNA); 4′-(CH2)-S-2′;4′-(CH2)2-O-2′ (ENA); 4′-CH(CH3)-O-2′ (also referred to as “constrainedethyl” or “cEt”) and 4′-CH(CH2OCH3)-O-2′ (and analogs thereof; see,e.g., U.S. Pat. No. 7,399,845); 4′-C(CH3)(CH3)-O-2′ (and analogsthereof; see e.g., U.S. Pat. No. 8,278,283); 4′-CH2-N(OCH3)-2′ (andanalogs thereof; see e.g., U.S. Pat. No. 8,278,425); 4′-CH2-O—N(CH3)-2′(see, e.g., U.S. Patent Publication No. 2004/0171570); 4′-CH2-N(R)—O-2′,wherein R is H, C1-C12 alkyl, or a protecting group (see, e.g., U.S.Pat. No. 7,427,672); 4′-CH2-C(H)(CH3)-2′ (see, e.g., Chattopadhyaya etal., J. Org. Chem., 2009, 74, 118-134); and 4′-CH2-C(═CH2)-2′ (andanalogs thereof; see, e.g., U.S. Pat. No. 8,278,426). The entirecontents of each of the foregoing are hereby incorporated herein byreference.

Additional representative U.S. Patents and US Patent Publications thatteach the preparation of locked nucleic acid nucleotides include, butare not limited to, the following: U.S. Pat. Nos. 6,268,490; 6,525,191;6,670,461; 6,770,748; 6,794,499; 6,998,484; 7,053,207; 7,034,133;7,084,125; 7,399,845; 7,427,672; 7,569,686; 7,741,457; 8,022,193;8,030,467; 8,278,425; 8,278,426; 8,278,283; US 2008/0039618; and US2009/0012281, the entire contents of each of which are herebyincorporated herein by reference.

In some embodiments, the iRNA of the invention comprises one or moremonomers that are UNA (unlocked nucleic acid) nucleotides. UNA isunlocked acyclic nucleic acid, wherein any of the bonds of the sugar hasbeen removed, forming an unlocked “sugar” residue. In one example, UNAalso encompasses monomer with bonds between C1′-C4′ have been removed(i.e. the covalent carbon-oxygen-carbon bond between the C1′ and C4′carbons). In another example, the C2′-C3′ bond (i.e. the covalentcarbon-carbon bond between the C2′ and C3′ carbons) of the sugar hasbeen removed (see Nuc. Acids Symp. Series, 52, 133-134 (2008) andFluiter et al., Mol. Biosyst., 2009, 10, 1039 hereby incorporated byreference).

Any of the foregoing bicyclic nucleosides can be prepared having one ormore stereochemical sugar configurations including for exampleα-L-ribofuranose and β-D-ribofuranose (see WO 99/14226).

The RNA of an iRNA can also be modified to include one or moreconstrained ethyl nucleotides. As used herein, a “constrained ethylnucleotide” or “cEt” is a locked nucleic acid comprising a bicyclicsugar moiety comprising a 4′-CH(CH3)-0-2′ bridge. In one embodiment, aconstrained ethyl nucleotide is in the S conformation referred to hereinas “S-cEt.”

An iRNA of the invention may also include one or more “conformationallyrestricted nucleotides” (“CRN”). CRN are nucleotide analogs with alinker connecting the C2′ and C4′ carbons of ribose or the C3 and -C5′carbons of ribose. CRN lock the ribose ring into a stable conformationand increase the hybridization affinity to mRNA. The linker is ofsufficient length to place the oxygen in an optimal position forstability and affinity resulting in less ribose ring puckering.

Representative publications that teach the preparation of certain of theabove noted CRN include, but are not limited to, US Patent PublicationNo. 2013/0190383; and PCT publication WO 2013/036868, the entirecontents of each of which are hereby incorporated herein by reference.

One or more of the nucleotides of an iRNA of the invention may alsoinclude a hydroxymethyl substituted nucleotide. A “hydroxymethylsubstituted nucleotide” is an acyclic 2′-3′-seco-nucleotide, alsoreferred to as an “unlocked nucleic acid” (“UNA”) modification

Representative U.S. publications that teach the preparation of UNAinclude, but are not limited to, U.S. Pat. No. 8,314,227; and US PatentPublication Nos. 2013/0096289; 2013/0011922; and 2011/0313020, theentire contents of each of which are hereby incorporated herein byreference.

Potentially stabilizing modifications to the ends of RNA molecules caninclude N-(acetylaminocaproyl)-4-hydroxyprolinol (Hyp-C6-NHAc),N-(caproyl-4-hydroxyprolinol (Hyp-C6), N-(acetyl-4-hydroxyprolinol(Hyp-NHAc), thymidine-2′-0-deoxythymidine (ether),N-(aminocaproyl)-4-hydroxyprolinol (Hyp-C6-amino),2-docosanoyl-uridine-3″-phosphate, inverted base dT(idT) and others.Disclosure of this modification can be found in PCT Publication No. WO2011/005861.

Other modifications of the nucleotides of an iRNA of the inventioninclude a 5′ phosphate or 5′ phosphate mimic, e.g., a 5′-terminalphosphate or phosphate mimic on the antisense strand of an RNAi agent.Suitable phosphate mimics are disclosed in, for example US PatentPublication No. 2012/0157511, the entire contents of which areincorporated herein by reference.

A. Modified iRNAs Comprising Motifs of the Invention

In certain aspects of the invention, the double stranded RNAi agents ofthe invention include agents with chemical modifications as disclosed,for example, in U.S. Provisional Application No. 61/561,710, filed onNov. 18, 2011, or in PCT/US2012/065691, filed on Nov. 16, 2012, theentire contents of each of which are incorporated herein by reference.

As shown herein and in Provisional Application No. 61/561,710 or PCTApplication No. PCT/US2012/065691, a superior result may be obtained byintroducing one or more motifs of three identical modifications on threeconsecutive nucleotides into a sense strand and/or antisense strand ofan RNAi agent, particularly at or near the cleavage site. In someembodiments, the sense strand and antisense strand of the RNAi agent mayotherwise be completely modified. The introduction of these motifsinterrupts the modification pattern, if present, of the sense and/orantisense strand. The RNAi agent may be optionally conjugated with aGalNAc derivative ligand, for instance on the sense strand. Theresulting RNAi agents present superior gene silencing activity.

More specifically, it has been surprisingly discovered that when thesense strand and antisense strand of the double stranded RNAi agent arecompletely modified to have one or more motifs of three identicalmodifications on three consecutive nucleotides at or near the cleavagesite of at least one strand of an RNAi agent, the gene silencingactivity of the RNAi agent was superiorly enhanced.

Accordingly, the invention provides double stranded RNAi agents capableof inhibiting the expression of a target gene (i.e., PNPLA3 gene) invivo. The RNAi agent comprises a sense strand and an antisense strand.Each strand of the RNAi agent may range from 12-30 nucleotides inlength. For example, each strand may be between 14-30 nucleotides inlength, 17-30 nucleotides in length, 25-30 nucleotides in length, 27-30nucleotides in length, 17-23 nucleotides in length, 17-21 nucleotides inlength, 17-19 nucleotides in length, 19-25 nucleotides in length, 19-23nucleotides in length, 19-21 nucleotides in length, 21-25 nucleotides inlength, or 21-23 nucleotides in length.

The sense strand and antisense strand typically form a duplex doublestranded RNA (“dsRNA”), also referred to herein as an “RNAi agent.” Theduplex region of an RNAi agent may be 12-30 nucleotide pairs in length.For example, the duplex region can be between 14-30 nucleotide pairs inlength, 17-30 nucleotide pairs in length, 27-30 nucleotide pairs inlength, 17-23 nucleotide pairs in length, 17-21 nucleotide pairs inlength, 17-19 nucleotide pairs in length, 19-25 nucleotide pairs inlength, 19-23 nucleotide pairs in length, 19-21 nucleotide pairs inlength, 21-25 nucleotide pairs in length, or 21-23 nucleotide pairs inlength. In another example, the duplex region is selected from 15, 16,17, 18, 19, 20, 21, 22, 23, 24, 25, 26, and 27 nucleotides in length.

In one embodiment, the RNAi agent may contain one or more overhangregions and/or capping groups at the 3′-end, 5′-end, or both ends of oneor both strands. The overhang can be 1-6 nucleotides in length, forinstance 2-6 nucleotides in length, 1-5 nucleotides in length, 2-5nucleotides in length, 1-4 nucleotides in length, 2-4 nucleotides inlength, 1-3 nucleotides in length, 2-3 nucleotides in length, or 1-2nucleotides in length. The overhangs can be the result of one strandbeing longer than the other, or the result of two strands of the samelength being staggered. The overhang can form a mismatch with the targetmRNA or it can be complementary to the gene sequences being targeted orcan be another sequence. The first and second strands can also bejoined, e.g., by additional bases to form a hairpin, or by othernon-base linkers.

In one embodiment, the nucleotides in the overhang region of the RNAiagent can each independently be a modified or unmodified nucleotideincluding, but no limited to 2′-sugar modified, such as, 2-F,2′-Omethyl, thymidine (T), 2′-O-methoxyethyl-5-methyluridine (Teo),2′-O-methoxyethyladenosine (Aeo), 2′-O-methoxyethyl-5-methylcytidine(m5Ceo), and any combinations thereof. For example, TT can be anoverhang sequence for either end on either strand. The overhang can forma mismatch with the target mRNA or it can be complementary to the genesequences being targeted or can be another sequence.

The 5′- or 3′-overhangs at the sense strand, antisense strand or bothstrands of the RNAi agent may be phosphorylated. In some embodiments,the overhang region(s) contains two nucleotides having aphosphorothioate between the two nucleotides, where the two nucleotidescan be the same or different. In one embodiment, the overhang is presentat the 3′-end of the sense strand, antisense strand, or both strands. Inone embodiment, this 3′-overhang is present in the antisense strand. Inone embodiment, this 3′-overhang is present in the sense strand.

The RNAi agent may contain only a single overhang, which can strengthenthe interference activity of the RNAi, without affecting its overallstability. For example, the single-stranded overhang may be located atthe 3′-terminal end of the sense strand or, alternatively, at the3′-terminal end of the antisense strand. The RNAi may also have a bluntend, located at the 5′-end of the antisense strand (or the 3′-end of thesense strand) or vice versa. Generally, the antisense strand of the RNAihas a nucleotide overhang at the 3′-end, and the 5′-end is blunt. Whilenot wishing to be bound by theory, the asymmetric blunt end at the5′-end of the antisense strand and 3′-end overhang of the antisensestrand favor the guide strand loading into RISC process.

In one embodiment, the RNAi agent is a double ended bluntmer of 19nucleotides in length, wherein the sense strand contains at least onemotif of three 2′-F modifications on three consecutive nucleotides atpositions 7, 8, 9 from the 5′end. The antisense strand contains at leastone motif of three 2′-O-methyl modifications on three consecutivenucleotides at positions 11, 12, 13 from the 5′end.

In another embodiment, the RNAi agent is a double ended bluntmer of 20nucleotides in length, wherein the sense strand contains at least onemotif of three 2′-F modifications on three consecutive nucleotides atpositions 8, 9, 10 from the 5′end. The antisense strand contains atleast one motif of three 2′-O-methyl modifications on three consecutivenucleotides at positions 11, 12, 13 from the 5′end.

In yet another embodiment, the RNAi agent is a double ended bluntmer of21 nucleotides in length, wherein the sense strand contains at least onemotif of three 2′-F modifications on three consecutive nucleotides atpositions 9, 10, 11 from the 5′end. The antisense strand contains atleast one motif of three 2′-O-methyl modifications on three consecutivenucleotides at positions 11, 12, 13 from the 5′end.

In one embodiment, the RNAi agent comprises a 21 nucleotide sense strandand a 23 nucleotide antisense strand, wherein the sense strand containsat least one motif of three 2′-F modifications on three consecutivenucleotides at positions 9, 10, 11 from the 5′end; the antisense strandcontains at least one motif of three 2′-O-methyl modifications on threeconsecutive nucleotides at positions 11, 12, 13 from the 5′end, whereinone end of the RNAi agent is blunt, while the other end comprises a 2nucleotide overhang. Preferably, the 2 nucleotide overhang is at the3′-end of the antisense strand.

When the 2 nucleotide overhang is at the 3′-end of the antisense strand,there may be two phosphorothioate internucleotide linkages between theterminal three nucleotides, wherein two of the three nucleotides are theoverhang nucleotides, and the third nucleotide is a paired nucleotidenext to the overhang nucleotide. In one embodiment, the RNAi agentadditionally has two phosphorothioate internucleotide linkages betweenthe terminal three nucleotides at both the 5′-end of the sense strandand at the 5′-end of the antisense strand. In one embodiment, everynucleotide in the sense strand and the antisense strand of the RNAiagent, including the nucleotides that are part of the motifs aremodified nucleotides. In one embodiment each residue is independentlymodified with a 2′-O-methyl or 3′-fluoro, e.g., in an alternating motif.Optionally, the RNAi agent further comprises a ligand (preferablyGalNAc₃).

In one embodiment, the RNAi agent comprises a sense and an antisensestrand, wherein the sense strand is 25-30 nucleotide residues in length,wherein starting from the 5′ terminal nucleotide (position 1) positions1 to 23 of the first strand comprise at least 8 ribonucleotides; theantisense strand is 36-66 nucleotide residues in length and, startingfrom the 3′ terminal nucleotide, comprises at least 8 ribonucleotides inthe positions paired with positions 1-23 of sense strand to form aduplex; wherein at least the 3 ‘ terminal nucleotide of antisense strandis unpaired with sense strand, and up to 6 consecutive 3’ terminalnucleotides are unpaired with sense strand, thereby forming a 3′ singlestranded overhang of 1-6 nucleotides; wherein the 5′ terminus ofantisense strand comprises from 10-30 consecutive nucleotides which areunpaired with sense strand, thereby forming a 10-30 nucleotide singlestranded 5′ overhang; wherein at least the sense strand 5′ terminal and3′ terminal nucleotides are base paired with nucleotides of antisensestrand when sense and antisense strands are aligned for maximumcomplementarity, thereby forming a substantially duplexed region betweensense and antisense strands; and antisense strand is sufficientlycomplementary to a target RNA along at least 19 ribonucleotides ofantisense strand length to reduce target gene expression when the doublestranded nucleic acid is introduced into a mammalian cell; and whereinthe sense strand contains at least one motif of three 2′-F modificationson three consecutive nucleotides, where at least one of the motifsoccurs at or near the cleavage site. The antisense strand contains atleast one motif of three 2′-O-methyl modifications on three consecutivenucleotides at or near the cleavage site.

In one embodiment, the RNAi agent comprises sense and antisense strands,wherein the RNAi agent comprises a first strand having a length which isat least 25 and at most 29 nucleotides and a second strand having alength which is at most 30 nucleotides with at least one motif of three2′-O-methyl modifications on three consecutive nucleotides at position11, 12, 13 from the 5′ end; wherein the 3′ end of the first strand andthe 5′ end of the second strand form a blunt end and the second strandis 1-4 nucleotides longer at its 3′ end than the first strand, whereinthe duplex region region which is at least 25 nucleotides in length, andthe second strand is sufficiently complemenatary to a target mRNA alongat least 19 nucleotide of the second strand length to reduce target geneexpression when the RNAi agent is introduced into a mammalian cell, andwherein dicer cleavage of the RNAi agent preferentially results in ansiRNA comprising the 3′ end of the second strand, thereby reducingexpression of the target gene in the mammal. Optionally, the RNAi agentfurther comprises a ligand.

In one embodiment, the sense strand of the RNAi agent contains at leastone motif of three identical modifications on three consecutivenucleotides, where one of the motifs occurs at the cleavage site in thesense strand.

In one embodiment, the antisense strand of the RNAi agent can alsocontain at least one motif of three identical modifications on threeconsecutive nucleotides, where one of the motifs occurs at or near thecleavage site in the antisense strand.

For an RNAi agent having a duplex region of 17-23 nucleotide in length,the cleavage site of the antisense strand is typically around the 10, 11and 12 positions from the 5′-end. Thus the motifs of three identicalmodifications may occur at the 9, 10, 11 positions; 10, 11, 12positions; 11, 12, 13 positions; 12, 13, 14 positions; or 13, 14, 15positions of the antisense strand, the count starting from the 1^(st)nucleotide from the 5′-end of the antisense strand, or, the countstarting from the 1^(st) paired nucleotide within the duplex region fromthe 5′-end of the antisense strand. The cleavage site in the antisensestrand may also change according to the length of the duplex region ofthe RNAi from the 5′-end.

The sense strand of the RNAi agent may contain at least one motif ofthree identical modifications on three consecutive nucleotides at thecleavage site of the strand; and the antisense strand may have at leastone motif of three identical modifications on three consecutivenucleotides at or near the cleavage site of the strand. When the sensestrand and the antisense strand form a dsRNA duplex, the sense strandand the antisense strand can be so aligned that one motif of the threenucleotides on the sense strand and one motif of the three nucleotideson the antisense strand have at least one nucleotide overlap, i.e., atleast one of the three nucleotides of the motif in the sense strandforms a base pair with at least one of the three nucleotides of themotif in the antisense strand. Alternatively, at least two nucleotidesmay overlap, or all three nucleotides may overlap.

In one embodiment, the sense strand of the RNAi agent may contain morethan one motif of three identical modifications on three consecutivenucleotides. The first motif may occur at or near the cleavage site ofthe strand and the other motifs may be a wing modification. The term“wing modification” herein refers to a motif occurring at anotherportion of the strand that is separated from the motif at or near thecleavage site of the same strand. The wing modification is eitheradjacent to the first motif or is separated by at least one or morenucleotides. When the motifs are immediately adjacent to each other thenthe chemistry of the motifs are distinct from each other and when themotifs are separated by one or more nucleotide than the chemistries canbe the same or different. Two or more wing modifications may be present.For instance, when two wing modifications are present, each wingmodification may occur at one end relative to the first motif which isat or near cleavage site or on either side of the lead motif.

Like the sense strand, the antisense strand of the RNAi agent maycontain more than one motifs of three identical modifications on threeconsecutive nucleotides, with at least one of the motifs occurring at ornear the cleavage site of the strand. This antisense strand may alsocontain one or more wing modifications in an alignment similar to thewing modifications that may be present on the sense strand.

In one embodiment, the wing modification on the sense strand orantisense strand of the RNAi agent typically does not include the firstone or two terminal nucleotides at the 3′-end, 5′-end or both ends ofthe strand.

In another embodiment, the wing modification on the sense strand orantisense strand of the RNAi agent typically does not include the firstone or two paired nucleotides within the duplex region at the 3′-end,5′-end or both ends of the strand.

When the sense strand and the antisense strand of the RNAi agent eachcontain at least one wing modification, the wing modifications may fallon the same end of the duplex region, and have an overlap of one, two orthree nucleotides.

When the sense strand and the antisense strand of the RNAi agent eachcontain at least two wing modifications, the sense strand and theantisense strand can be so aligned that two modifications each from onestrand fall on one end of the duplex region, having an overlap of one,two or three nucleotides; two modifications each from one strand fall onthe other end of the duplex region, having an overlap of one, two orthree nucleotides; two modifications one strand fall on each side of thelead motif, having an overlap of one, two or three nucleotides in theduplex region.

In one embodiment, every nucleotide in the sense strand and antisensestrand of the RNAi agent, including the nucleotides that are part of themotifs, may be modified. Each nucleotide may be modified with the sameor different modification which can include one or more alteration ofone or both of the non-linking phosphate oxygens and/or of one or moreof the linking phosphate oxygens; alteration of a constituent of theribose sugar, e.g., of the 2′ hydroxyl on the ribose sugar; wholesalereplacement of the phosphate moiety with “dephospho” linkers;modification or replacement of a naturally occurring base; andreplacement or modification of the ribose-phosphate backbone.

As nucleic acids are polymers of subunits, many of the modificationsoccur at a position which is repeated within a nucleic acid, e.g., amodification of a base, or a phosphate moiety, or a non-linking O of aphosphate moiety. In some cases the modification will occur at all ofthe subject positions in the nucleic acid but in many cases it will not.By way of example, a modification may only occur at a 3′ or 5′ terminalposition, may only occur in a terminal region, e.g., at a position on aterminal nucleotide or in the last 2, 3, 4, 5, or 10 nucleotides of astrand. A modification may occur in a double strand region, a singlestrand region, or in both. A modification may occur only in the doublestrand region of a RNA or may only occur in a single strand region of aRNA. For example, a phosphorothioate modification at a non-linking Oposition may only occur at one or both termini, may only occur in aterminal region, e.g., at a position on a terminal nucleotide or in thelast 2, 3, 4, 5, or 10 nucleotides of a strand, or may occur in doublestrand and single strand regions, particularly at termini. The 5′ end orends can be phosphorylated.

It may be possible, e.g., to enhance stability, to include particularbases in overhangs, or to include modified nucleotides or nucleotidesurrogates, in single strand overhangs, e.g., in a 5′ or 3′ overhang, orin both. For example, it can be desirable to include purine nucleotidesin overhangs. In some embodiments all or some of the bases in a 3′ or 5′overhang may be modified, e.g., with a modification described herein.Modifications can include, e.g., the use of modifications at the 2′position of the ribose sugar with modifications that are known in theart, e.g., the use of deoxyribonucleotides, 2′-deoxy-2′-fluoro (2′-F) or2′-O-methyl modified instead of the ribosugar of the nucleobase, andmodifications in the phosphate group, e.g., phosphorothioatemodifications. Overhangs need not be homologous with the targetsequence.

In one embodiment, each residue of the sense strand and antisense strandis independently modified with LNA, CRN, cET, UNA, HNA, CeNA,2′-methoxyethyl, 2′-O-methyl, 2′-O-allyl, 2′-C-allyl, 2′-deoxy,2′-hydroxyl, or 2′-fluoro. The strands can contain more than onemodification. In one embodiment, each residue of the sense strand andantisense strand is independently modified with 2′-O-methyl or2′-fluoro.

At least two different modifications are typically present on the sensestrand and antisense strand. Those two modifications may be the2′-O-methyl or 2′-fluoro modifications, or others.

In one embodiment, the N_(a) and/or N_(b) comprise modifications of analternating pattern. The term “alternating motif” as used herein refersto a motif having one or more modifications, each modification occurringon alternating nucleotides of one strand. The alternating nucleotide mayrefer to one per every other nucleotide or one per every threenucleotides, or a similar pattern. For example, if A, B and C eachrepresent one type of modification to the nucleotide, the alternatingmotif can be “ABABABABABAB . . . ,” “AABBAABBAABB . . . ,” “AABAABAABAAB. . . ,” “AAABAAABAAAB . . . ,” “AAABBBAAABBB . . . ,” or “ABCABCABCABC. . . ,” etc.

The type of modifications contained in the alternating motif may be thesame or different. For example, if A, B, C, D each represent one type ofmodification on the nucleotide, the alternating pattern, i.e.,modifications on every other nucleotide, may be the same, but each ofthe sense strand or antisense strand can be selected from severalpossibilities of modifications within the alternating motif such as“ABABAB . . . ”, “ACACAC . . . ” “BDBDBD . . . ” or “CDCDCD . . . ,”etc.

In one embodiment, the RNAi agent of the invention comprises themodification pattern for the alternating motif on the sense strandrelative to the modification pattern for the alternating motif on theantisense strand is shifted. The shift may be such that the modifiedgroup of nucleotides of the sense strand corresponds to a differentlymodified group of nucleotides of the antisense strand and vice versa.For example, the sense strand when paired with the antisense strand inthe dsRNA duplex, the alternating motif in the sense strand may startwith “ABABAB” from 5′-3′ of the strand and the alternating motif in theantisense strand may start with “BABABA” from 5′-3 ‘of the strand withinthe duplex region. As another example, the alternating motif in thesense strand may start with “AABBAABB” from 5’-3′ of the strand and thealternating motif in the antisenese strand may start with “BBAABBAA”from 5′-3′ of the strand within the duplex region, so that there is acomplete or partial shift of the modification patterns between the sensestrand and the antisense strand.

In one embodiment, the RNAi agent comprises the pattern of thealternating motif of 2′-O-methyl modification and 2′-F modification onthe sense strand initially has a shift relative to the pattern of thealternating motif of 2′-O-methyl modification and 2′-F modification onthe antisense strand initially, i.e., the 2′-O-methyl modifiednucleotide on the sense strand base pairs with a 2′-F modifiednucleotide on the antisense strand and vice versa. The 1 position of thesense strand may start with the 2′-F modification, and the 1 position ofthe antisense strand may start with the 2′-O-methyl modification.

The introduction of one or more motifs of three identical modificationson three consecutive nucleotides to the sense strand and/or antisensestrand interrupts the initial modification pattern present in the sensestrand and/or antisense strand. This interruption of the modificationpattern of the sense and/or antisense strand by introducing one or moremotifs of three identical modifications on three consecutive nucleotidesto the sense and/or antisense strand surprisingly enhances the genesilencing activity to the target gene.

In one embodiment, when the motif of three identical modifications onthree consecutive nucleotides is introduced to any of the strands, themodification of the nucleotide next to the motif is a differentmodification than the modification of the motif. For example, theportion of the sequence containing the motif is “ . . . N_(a)YYYN_(b) .. . ,” where “Y” represents the modification of the motif of threeidentical modifications on three consecutive nucleotide, and “N_(a)” and“N_(b)” represent a modification to the nucleotide next to the motif“YYY” that is different than the modification of Y, and where N_(a) andN_(b) can be the same or different modifications. Alternatively, N_(a)and/or N_(b) may be present or absent when there is a wing modificationpresent.

The RNAi agent may further comprise at least one phosphorothioate ormethylphosphonate internucleotide linkage. The phosphorothioate ormethylphosphonate internucleotide linkage modification may occur on anynucleotide of the sense strand or antisense strand or both strands inany position of the strand. For instance, the internucleotide linkagemodification may occur on every nucleotide on the sense strand and/orantisense strand; each internucleotide linkage modification may occur inan alternating pattern on the sense strand and/or antisense strand; orthe sense strand or antisense strand may contain both internucleotidelinkage modifications in an alternating pattern. The alternating patternof the internucleotide linkage modification on the sense strand may bethe same or different from the antisense strand, and the alternatingpattern of the internucleotide linkage modification on the sense strandmay have a shift relative to the alternating pattern of theinternucleotide linkage modification on the antisense strand. In oneembodiment, a double-standed RNAi agent comprises 6-8phosphorothioateinternucleotide linkages. In one embodiment, the antisense strandcomprises two phosphorothioate internucleotide linkages at the5′-terminus and two phosphorothioate internucleotide linkages at the3′-terminus, and the sense strand comprises at least twophosphorothioate internucleotide linkages at either the 5′-terminus orthe 3′-terminus.

In one embodiment, the RNAi comprises a phosphorothioate ormethylphosphonate internucleotide linkage modification in the overhangregion. For example, the overhang region may contain two nucleotideshaving a phosphorothioate or methylphosphonate internucleotide linkagebetween the two nucleotides. Internucleotide linkage modifications alsomay be made to link the overhang nucleotides with the terminal pairednucleotides within the duplex region. For example, at least 2, 3, 4, orall the overhang nucleotides may be linked through phosphorothioate ormethylphosphonate internucleotide linkage, and optionally, there may beadditional phosphorothioate or methylphosphonate internucleotidelinkages linking the overhang nucleotide with a paired nucleotide thatis next to the overhang nucleotide. For instance, there may be at leasttwo phosphorothioate internucleotide linkages between the terminal threenucleotides, in which two of the three nucleotides are overhangnucleotides, and the third is a paired nucleotide next to the overhangnucleotide. These terminal three nucleotides may be at the 3′-end of theantisense strand, the 3′-end of the sense strand, the 5′-end of theantisense strand, and/or the 5′end of the antisense strand.

In one embodiment, the 2 nucleotide overhang is at the 3′-end of theantisense strand, and there are two phosphorothioate internucleotidelinkages between the terminal three nucleotides, wherein two of thethree nucleotides are the overhang nucleotides, and the third nucleotideis a paired nucleotide next to the overhang nucleotide. Optionally, theRNAi agent may additionally have two phosphorothioate internucleotidelinkages between the terminal three nucleotides at both the 5′-end ofthe sense strand and at the 5′-end of the antisense strand.

In one embodiment, the RNAi agent comprises mismatch(es) with thetarget, within the duplex, or combinations thereof. The mistmatch mayoccur in the overhang region or the duplex region. The base pair may beranked on the basis of their propensity to promote dissociation ormelting (e.g., on the free energy of association or dissociation of aparticular pairing, the simplest approach is to examine the pairs on anindividual pair basis, though next neighbor or similar analysis can alsobe used). In terms of promoting dissociation: A:U is preferred over G:C;G:U is preferred over G:C; and I:C is preferred over G:C (I=inosine).Mismatches, e.g., non-canonical or other than canonical pairings (asdescribed elsewhere herein) are preferred over canonical (A:T, A:U, G:C)pairings; and pairings which include a universal base are preferred overcanonical pairings.

In one embodiment, the RNAi agent comprises at least one of the first 1,2, 3, 4, or 5 base pairs within the duplex regions from the 5′-end ofthe antisense strand independently selected from the group of: A:U, G:U,I:C, and mismatched pairs, e.g., non-canonical or other than canonicalpairings or pairings which include a universal base, to promote thedissociation of the antisense strand at the 5′-end of the duplex.

In one embodiment, the nucleotide at the 1 position within the duplexregion from the 5′-end in the antisense strand is selected from thegroup consisting of A, dA, dU, U, and dT. Alternatively, at least one ofthe first 1, 2 or 3 base pair within the duplex region from the 5′-endof the antisense strand is an AU base pair. For example, the first basepair within the duplex region from the 5′-end of the antisense strand isan AU base pair.

In another embodiment, the nucleotide at the 3′-end of the sense strandis deoxy-thymine (dT). In another embodiment, the nucleotide at the3′-end of the antisense strand is deoxy-thymine (dT). In one embodiment,there is a short sequence of deoxy-thymine nucleotides, for example, twodT nucleotides on the 3′-end of the sense and/or antisense strand.

In one embodiment, the sense strand sequence may be represented byformula (I):

(I) 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z Z Z)_(j)-N_(a)-n_(q)3′

wherein:

i and j are each independently 0 or 1;

p and q are each independently 0-6;

each N_(a) independently represents an oligonucleotide sequencecomprising 0-25 modified nucleotides, each sequence comprising at leasttwo differently modified nucleotides;

each N_(b) independently represents an oligonucleotide sequencecomprising 0-10 modified nucleotides;

each n_(p) and n_(q) independently represent an overhang nucleotide;

wherein Nb and Y do not have the same modification; and

XXX, YYY and ZZZ each independently represent one motif of threeidentical modifications on three consecutive nucleotides. Preferably YYYis all 2′-F modified nucleotides.

In one embodiment, the N_(a) and/or N_(b) comprise modifications ofalternating pattern.

In one embodiment, the YYY motif occurs at or near the cleavage site ofthe sense strand. For example, when the RNAi agent has a duplex regionof 17-23 nucleotides in length, the YYY motif can occur at or thevicinity of the cleavage site (e.g.: can occur at positions 6, 7, 8, 7,8, 9, 8, 9, 10, 9, 10, 11, 10, 11, 12 or 11, 12, 13) of—the sensestrand, the count starting from the 1^(st) nucleotide, from the 5′-end;or optionally, the count starting at the 1^(st) paired nucleotide withinthe duplex region, from the 5′-end.

In one embodiment, i is 1 and j is 0, or i is 0 and j is 1, or both iand j are 1. The sense strand can therefore be represented by thefollowing formulas:

(Ib) 5′ n_(p)-N_(a)-YYY-N_(b)-ZZZ-N_(a)-n_(q) 3′; (Ic)5′ n_(p)-N_(a)-XXX-N_(b)-YYY-N_(a)-n_(q) 3′; or (Id)5′ n_(p)-N_(a)-XXX-N_(b)-YYY-N_(b)-ZZZ-N_(a)-n_(q) 3′.

When the sense strand is represented by formula (Ib), N_(b) representsan oligonucleotide sequence comprising 0-10, 0-7, 0-5, 0-4, 0-2 or 0modified nucleotides. Each N_(a) independently can represent anoligonucleotide sequence comprising 2-20, 2-15, or 2-10 modifiednucleotides.

When the sense strand is represented as formula (Ic), N_(b) representsan oligonucleotide sequence comprising 0-10, 0-7, 0-10, 0-7, 0-5, 0-4,0-2 or 0 modified nucleotides. Each N_(a) can independently represent anoligonucleotide sequence comprising 2-20, 2-15, or 2-10 modifiednucleotides.

When the sense strand is represented as formula (Id), each N_(b)independently represents an oligonucleotide sequence comprising 0-10,0-7, 0-5, 0-4, 0-2 or 0 modified nucleotides. Preferably, N_(b) is 0, 1,2, 3, 4, 5 or 6 Each N_(a) can independently represent anoligonucleotide sequence comprising 2-20, 2-15, or 2-10 modifiednucleotides.

Each of X, Y and Z may be the same or different from each other.

In other embodiments, i is 0 and j is 0, and the sense strand may berepresented by the formula:

(Ia) 5′ n_(p)-N_(a)-YYY-N_(a)-n_(q) 3′.

When the sense strand is represented by formula (Ia), each N_(a)independently can represent an oligonucleotide sequence comprising 2-20,2-15, or 2-10 modified nucleotides.

In one embodiment, the antisense strand sequence of the RNAi may berepresented by formula (II):

(II)5′ n_(q′)-N_(a)′-(Z′Z′Z′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(X′X′X′)_(l)-N′_(a)-n_(p)′ 3′

wherein:

k and l are each independently 0 or 1;

p′ and q′ are each independently 0-6;

each N_(a)′ independently represents an oligonucleotide sequencecomprising 0-25 modified nucleotides, each sequence comprising at leasttwo differently modified nucleotides;

each N_(b)′ independently represents an oligonucleotide sequencecomprising 0-10 modified nucleotides;

each n_(p)′ and n_(q)′ independently represent an overhang nucleotide;

wherein N_(b)′ and Y′ do not have the same modification; and

X′X′X′, Y′Y′Y′ and Z′Z′Z′ each independently represent one motif ofthree identical modifications on three consecutive nucleotides.

In one embodiment, the N_(a)′ and/or N_(b)′ comprise modifications ofalternating pattern.

The Y′Y′Y′ motif occurs at or near the cleavage site of the antisensestrand. For example, when the RNAi agent has a duplex region of 17-23nucleotide in length, the Y′Y′Y′ motif can occur at positions 9, 10, 11;10, 11, 12; 11, 12, 13; 12, 13, 14; or 13, 14, 15 of the antisensestrand, with the count starting from the 1^(st) nucleotide, from the5′-end; or optionally, the count starting at the 1^(st) pairednucleotide within the duplex region, from the 5′-end. Preferably, theY′Y′Y′ motif occurs at positions 11, 12, 13.

In one embodiment, Y′Y′Y′ motif is all 2′-OMe modified nucleotides.

In one embodiment, k is 1 and l is 0, or k is 0 and l is 1, or both kand l are 1.

The antisense strand can therefore be represented by the followingformulas:

(IIb) 5′ n_(q′)-N_(a)′-Z′Z′Z′-N_(b)′-Y′Y′Y′-N_(a)′-n_(p′) 3′; (IIc)5′ n_(q′)-N_(a)′-Y′Y′Y′-N_(b)′-X′X′X′-n_(p′) 3′; or (IId)5′ n_(q′)-N_(a)′-Z′Z′Z′-N_(b)′-Y′Y′Y′-N_(b)′-X′X′X′-N_(a)′- n_(p′) 3′.

When the antisense strand is represented by formula (IIb), N_(b)represents an oligonucleotide sequence comprising 0-10, 0-7, 0-10, 0-7,0-5, 0-4, 0-2 or 0 modified nucleotides. Each N_(a)′ independentlyrepresents an oligonucleotide sequence comprising 2-20, 2-15, or 2-10modified nucleotides.

When the antisense strand is represented as formula (IIc), N_(b)′represents an oligonucleotide sequence comprising 0-10, 0-7, 0-10, 0-7,0-5, 0-4, 0-2 or 0 modified nucleotides. Each N_(a)′ independentlyrepresents an oligonucleotide sequence comprising 2-20, 2-15, or 2-10modified nucleotides.

When the antisense strand is represented as formula (IId), each N_(b)′independently represents an oligonucleotide sequence comprising 0-10,0-7, 0-10, 0-7, 0-5, 0-4, 0-2 or 0 modified nucleotides. Each N_(a)′independently represents an oligonucleotide sequence comprising 2-20,2-15, or 2-10 modified nucleotides. Preferably, N_(b) is 0, 1, 2, 3, 4,5 or 6.

In other embodiments, k is 0 and l is 0 and the antisense strand may berepresented by the formula:

(Ia) 5′ n_(p′)-N_(a′)-Y′Y′Y′-N_(a′)-n_(q′) 3′.

When the antisense strand is represented as formula (IIa), each N_(a)′independently represents an oligonucleotide sequence comprising 2-20,2-15, or 2-10 modified nucleotides. Each of X′, Y′ and Z′ may be thesame or different from each other.

Each nucleotide of the sense strand and antisense strand may beindependently modified with LNA, CRN, UNA, cEt, HNA, CeNA,2′-methoxyethyl, 2′-O-methyl, 2′-O-allyl, 2′-C-allyl, 2′-hydroxyl, or2′-fluoro. For example, each nucleotide of the sense strand andantisense strand is independently modified with 2′-O-methyl or2′-fluoro. Each X, Y, Z, X′, Y′ and Z′, in particular, may represent a2′-O-methyl modification or a 2′-fluoro modification.

In one embodiment, the sense strand of the RNAi agent may contain YYYmotif occurring at 9, 10 and 11 positions of the strand when the duplexregion is 21 nt, the count starting from the 1^(st) nucleotide from the5′-end, or optionally, the count starting at the 1^(st) pairednucleotide within the duplex region, from the 5′-end; and Y represents2′-F modification. The sense strand may additionally contain XXX motifor ZZZ motifs as wing modifications at the opposite end of the duplexregion; and XXX and ZZZ each independently represents a 2′-OMemodification or 2′-F modification.

In one embodiment the antisense strand may contain Y′Y′Y′ motifoccurring at positions 11, 12, 13 of the strand, the count starting fromthe 1^(st) nucleotide from the 5′-end, or optionally, the count startingat the 1^(st) paired nucleotide within the duplex region, from the5′-end; and Y′ represents 2′-O-methyl modification. The antisense strandmay additionally contain X′X′X′ motif or Z′Z′Z′ motifs as wingmodifications at the opposite end of the duplex region; and X′X′X′ andZ′Z′Z′ each independently represents a 2′-OMe modification or 2′-Fmodification.

The sense strand represented by any one of the above formulas (Ia),(Ib), (Ic), and (Id) forms a duplex with a antisense strand beingrepresented by any one of formulas (IIa), (IIb), (IIc), and (IId),respectively.

Accordingly, the RNAi agents for use in the methods of the invention maycomprise a sense strand and an antisense strand, each strand having 14to 30 nucleotides, the RNAi duplex represented by formula (III):

(III) sense: 5′ n_(p)-N_(a)-(X X X)_(i)-N_(b)-Y Y Y-N_(b)-(Z ZZ)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein:

j, k, and l are each independently 0 or 1;

p, p′, q, and q′ are each independently 0-6;

each N_(a) and N_(a)′ independently represents an oligonucleotidesequence comprising 0-25 modified nucleotides, each sequence comprisingat least two differently modified nucleotides;

each N_(b) and N_(b)′ independently represents an oligonucleotidesequence comprising 0-10 modified nucleotides;

wherein each n_(p)′, n_(p), n_(q)′, and n_(q), each of which may or maynot be present, independently represents an overhang nucleotide; and

XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently representone motif of three identical modifications on three consecutivenucleotides.

In one embodiment, i is 0 and j is 0; or i is 1 and j is 0; or i is 0and j is 1; or both i and j are 0; or both i and j are 1. In anotherembodiment, k is 0 and l is 0; or k is 1 and l is 0; k is 0 and l is 1;or both k and l are 0; or both k and l are 1.

Exemplary combinations of the sense strand and antisense strand forminga RNAi duplex include the formulas below:

(IIIa) 5′ n_(p)-N_(a)-Y Y Y-N_(a)-n_(q) 3′3′ n_(p)′-N_(a)′-Y′Y′Y′-N_(a)′n_(q)′ 5′ (IIIb) 5′ n_(p)-N_(a)-Y YY-N_(b)-Z Z Z-N_(a)-n_(q) 3′3′ n_(p)′-N_(a)′-Y′Y′Y′-N_(b)′-Z′Z′Z′-N_(a)′n_(q)′ 5′ (IIIc)5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(a)-n_(q) 3′3′ n_(p)′-N_(a)′-X′X′X′-N_(b)′-Y′Y′Y′-N_(a)′-n_(q)′ 5′ (IIId)5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(b)-Z Z Z-N_(a)-n_(q) 3′3′ n_(p)′-N_(a)′-X′X′X′-N_(b)′-Y′Y′Y′-N_(b)′-Z′Z′Z′-N_(a)-n_(q)′ 5′

When the RNAi agent is represented by formula (IIIa), each N_(a)independently represents an oligonucleotide sequence comprising 2-20,2-15, or 2-10 modified nucleotides.

When the RNAi agent is represented by formula (IIIb), each N_(b)independently represents an oligonucleotide sequence comprising 1-10,1-7, 1-5 or 1-4 modified nucleotides. Each N_(a) independentlyrepresents an oligonucleotide sequence comprising 2-20, 2-15, or 2-10modified nucleotides.

When the RNAi agent is represented as formula (IIIc), each N_(b), N_(b)′independently represents an oligonucleotide sequence comprising 0-10,0-7, 0-10, 0-7, 0-5, 0-4, 0-2 or 0 modified nucleotides. Each N_(a)independently represents an oligonucleotide sequence comprising 2-20,2-15, or 2-10 modified nucleotides.

When the RNAi agent is represented as formula (IIId), each N_(b), N_(b)′independently represents an oligonucleotide sequence comprising 0-10,0-7, 0-10, 0-7, 0-5, 0-4, 0-2 or 0 modified nucleotides. Each N_(a),N_(a)′ independently represents an oligonucleotide sequence comprising2-20, 2-15, or 2-10 modified nucleotides. Each of N_(a), N_(a)′, N_(b)and N_(b)′ independently comprises modifications of alternating pattern.

Each of X, Y and Z in formulas (III), (IIIa), (IIIb), (IIIc), and (IIId)may be the same or different from each other.

When the RNAi agent is represented by formula (III), (IIIa), (IIIb),(IIIc), and (IIId), at least one of the Y nucleotides may form a basepair with one of the Y′ nucleotides. Alternatively, at least two of theY nucleotides form base pairs with the corresponding Y′ nucleotides; orall three of the Y nucleotides all form base pairs with thecorresponding Y′ nucleotides.

When the RNAi agent is represented by formula (IIIb) or (IIId), at leastone of the Z nucleotides may form a base pair with one of the Z′nucleotides. Alternatively, at least two of the Z nucleotides form basepairs with the corresponding Z′ nucleotides; or all three of the Znucleotides all form base pairs with the corresponding Z′ nucleotides.

When the RNAi agent is represented as formula (IIIc) or (IIId), at leastone of the X nucleotides may form a base pair with one of the X′nucleotides. Alternatively, at least two of the X nucleotides form basepairs with the corresponding X′ nucleotides; or all three of the Xnucleotides all form base pairs with the corresponding X′ nucleotides.

In one embodiment, the modification on the Y nucleotide is differentthan the modification on the Y′ nucleotide, the modification on the Znucleotide is different than the modification on the Z′ nucleotide,and/or the modification on the X nucleotide is different than themodification on the X′ nucleotide.

In one embodiment, when the RNAi agent is represented by formula (IIId),the N_(a) modifications are 2′-O-methyl or 2′-fluoro modifications. Inanother embodiment, when the RNAi agent is represented by formula(IIId), the N_(a) modifications are 2′-O-methyl or 2′-fluoromodifications and n_(p)′>0 and at least one n_(p)′ is linked to aneighboring nucleotide a via phosphorothioate linkage. In yet anotherembodiment, when the RNAi agent is represented by formula (IIId), theN_(a) modifications are 2′-O-methyl or 2′-fluoro modifications, n_(p)′>0and at least one n_(p)′ is linked to a neighboring nucleotide viaphosphorothioate linkage, and the sense strand is conjugated to one ormore GalNAc derivatives attached through a bivalent or trivalentbranched linker (described below). In another embodiment, when the RNAiagent is represented by formula (IIId), the N_(a) modifications are2′-O-methyl or 2′-fluoro modifications, n_(p)′>0 and at least one n_(p)′is linked to a neighboring nucleotide via phosphorothioate linkage, thesense strand comprises at least one phosphorothioate linkage, and thesense strand is conjugated to one or more GalNAc derivatives attachedthrough a bivalent or trivalent branched linker.

In one embodiment, when the RNAi agent is represented by formula (IIIa),the N_(a) modifications are 2′-O-methyl or 2′-fluoro modifications,n_(p)′>0 and at least one n_(p)′ is linked to a neighboring nucleotidevia phosphorothioate linkage, the sense strand comprises at least onephosphorothioate linkage, and the sense strand is conjugated to one ormore GalNAc derivatives attached through a bivalent or trivalentbranched linker.

In one embodiment, the RNAi agent is a multimer containing at least twoduplexes represented by formula (III), (IIIa), (IIIb), (IIIc), and(IIId), wherein the duplexes are connected by a linker. The linker canbe cleavable or non-cleavable. Optionally, the multimer furthercomprises a ligand. Each of the duplexes can target the same gene or twodifferent genes; or each of the duplexes can target same gene at twodifferent target sites.

In one embodiment, the RNAi agent is a multimer containing three, four,five, six or more duplexes represented by formula (III), (IIIa), (IIIb),(IIIc), and (IIId), wherein the duplexes are connected by a linker. Thelinker can be cleavable or non-cleavable. Optionally, the multimerfurther comprises a ligand. Each of the duplexes can target the samegene or two different genes; or each of the duplexes can target samegene at two different target sites.

In one embodiment, two RNAi agents represented by formula (III), (IIIa),(IIIb), (IIIc), and (IIId) are linked to each other at the 5′ end, andone or both of the 3′ ends and are optionally conjugated to a ligand.Each of the agents can target the same gene or two different genes; oreach of the agents can target same gene at two different target sites.

Various publications describe multimeric RNAi agents that can be used inthe methods of the invention. Such publications include WO2007/091269,U.S. Pat. No. 7,858,769, WO2010/141511, WO2007/117686, WO2009/014887 andWO2011/031520 the entire contents of each of which are herebyincorporated herein by reference.

As described in more detail below, the RNAi agent that containsconjugations of one or more carbohydrate moieties to a RNAi agent canoptimize one or more properties of the RNAi agent. In many cases, thecarbohydrate moiety will be attached to a modified subunit of the RNAiagent. For example, the ribose sugar of one or more ribonucleotidesubunits of a dsRNA agent can be replaced with another moiety, e.g., anon-carbohydrate (preferably cyclic) carrier to which is attached acarbohydrate ligand. A ribonucleotide subunit in which the ribose sugarof the subunit has been so replaced is referred to herein as a ribosereplacement modification subunit (RRMS). A cyclic carrier may be acarbocyclic ring system, i.e., all ring atoms are carbon atoms, or aheterocyclic ring system, i.e., one or more ring atoms may be aheteroatom, e.g., nitrogen, oxygen, sulfur. The cyclic carrier may be amonocyclic ring system, or may contain two or more rings, e.g. fusedrings. The cyclic carrier may be a fully saturated ring system, or itmay contain one or more double bonds.

The ligand may be attached to the polynucleotide via a carrier. Thecarriers include (i) at least one “backbone attachment point,”preferably two “backbone attachment points” and (ii) at least one“tethering attachment point.” A “backbone attachment point” as usedherein refers to a functional group, e.g. a hydroxyl group, orgenerally, a bond available for, and that is suitable for incorporationof the carrier into the backbone, e.g., the phosphate, or modifiedphosphate, e.g., sulfur containing, backbone, of a ribonucleic acid. A“tethering attachment point” (TAP) in some embodiments refers to aconstituent ring atom of the cyclic carrier, e.g., a carbon atom or aheteroatom (distinct from an atom which provides a backbone attachmentpoint), that connects a selected moiety. The moiety can be, e.g., acarbohydrate, e.g. monosaccharide, disaccharide, trisaccharide,tetrasaccharide, oligosaccharide and polysaccharide. Optionally, theselected moiety is connected by an intervening tether to the cycliccarrier. Thus, the cyclic carrier will often include a functional group,e.g., an amino group, or generally, provide a bond, that is suitable forincorporation or tethering of another chemical entity, e.g., a ligand tothe constituent ring.

The RNAi agents may be conjugated to a ligand via a carrier, wherein thecarrier can be cyclic group or acyclic group; preferably, the cyclicgroup is selected from pyrrolidinyl, pyrazolinyl, pyrazolidinyl,imidazolinyl, imidazolidinyl, piperidinyl, piperazinyl, [1,3]dioxolane,oxazolidinyl, isoxazolidinyl, morpholinyl, thiazolidinyl,isothiazolidinyl, quinoxalinyl, pyridazinonyl, tetrahydrofuryl anddecalin; preferably, the acyclic group is selected from serinol backboneor diethanolamine backbone.

In certain specific embodiments, the RNAi agent for use in the methodsof the invention is an agent selected from the group of agents listed inany one of Tables 3-5, 7, and 8. These agents may further comprise aligand.

IV. iRNAs Conjugated to Ligands

Another modification of the RNA of an iRNA of the invention involveschemically linking to the RNA one or more ligands, moieties orconjugates that enhance the activity, cellular distribution or cellularuptake of the iRNA. Such moieties include but are not limited to lipidmoieties such as a cholesterol moiety (Letsinger et al., Proc. Natl.Acid. Sci. USA, 1989, 86: 6553-6556), cholic acid (Manoharan et al.,Biorg. Med. Chem. Let., 1994, 4:1053-1060), a thioether, e.g.,beryl-S-tritylthiol (Manoharan et al., Ann. N.Y. Acad. Sci., 1992,660:306-309; Manoharan et al., Biorg. Med. Chem. Let., 1993,3:2765-2770), a thiocholesterol (Oberhauser et al., Nucl. Acids Res.,1992, 20:533-538), an aliphatic chain, e.g., dodecandiol or undecylresidues (Saison-Behmoaras et al., EMBO J, 1991, 10:1111-1118; Kabanovet al., FEBS Lett., 1990, 259:327-330; Svinarchuk et al., Biochimie,1993, 75:49-54), a phospholipid, e.g., di-hexadecyl-rac-glycerol ortriethyl-ammonium 1,2-di-O-hexadecyl-rac-glycero-3-phosphonate(Manoharan et al., Tetrahedron Lett., 1995, 36:3651-3654; Shea et al.,Nucl. Acids Res., 1990, 18:3777-3783), a polyamine or a polyethyleneglycol chain (Manoharan et al., Nucleosides & Nucleotides, 1995,14:969-973), or adamantane acetic acid (Manoharan et al., TetrahedronLett., 1995, 36:3651-3654), a palmityl moiety (Mishra et al., Biochim.Biophys. Acta, 1995, 1264:229-237), or an octadecylamine orhexylamino-carbonyloxycholesterol moiety (Crooke et al., J. Pharmacol.Exp. Ther., 1996, 277:923-937).

In one embodiment, a ligand alters the distribution, targeting orlifetime of an iRNA agent into which it is incorporated. In preferredembodiments a ligand provides an enhanced affinity for a selectedtarget, e.g., molecule, cell or cell type, compartment, e.g., a cellularor organ compartment, tissue, organ or region of the body, as, e.g.,compared to a species absent such a ligand. Preferred ligands will nottake part in duplex pairing in a duplexed nucleic acid.

Ligands can include a naturally occurring substance, such as a protein(e.g., human serum albumin (HSA), low-density lipoprotein (LDL), orglobulin); carbohydrate (e.g., a dextran, pullulan, chitin, chitosan,inulin, cyclodextrin, N-acetylgalactosamine, or hyaluronic acid); or alipid. The ligand can also be a recombinant or synthetic molecule, suchas a synthetic polymer, e.g., a synthetic polyamino acid. Examples ofpolyamino acids include polyamino acid is a polylysine (PLL), polyL-aspartic acid, poly L-glutamic acid, styrene-maleic acid anhydridecopolymer, poly(L-lactide-co-glycolied) copolymer, divinyl ether-maleicanhydride copolymer, N-(2-hydroxypropyl)methacrylamide copolymer (HMPA),polyethylene glycol (PEG), polyvinyl alcohol (PVA), polyurethane,poly(2-ethylacryllic acid), N-isopropylacrylamide polymers, orpolyphosphazine. Example of polyamines include: polyethylenimine,polylysine (PLL), spermine, spermidine, polyamine,pseudopeptide-polyamine, peptidomimetic polyamine, dendrimer polyamine,arginine, amidine, protamine, cationic lipid, cationic porphyrin,quaternary salt of a polyamine, or an alpha helical peptide.

Ligands can also include targeting groups, e.g., a cell or tissuetargeting agent, e.g., a lectin, glycoprotein, lipid or protein, e.g.,an antibody, that binds to a specified cell type such as a kidney cell.A targeting group can be a thyrotropin, melanotropin, lectin,glycoprotein, surfactant protein A, Mucin carbohydrate, multivalentlactose, multivalent galactose, N-acetyl-galactosamine,N-acetyl-gulucoseamine multivalent mannose, multivalent fucose,glycosylated polyaminoacids, multivalent galactose, transferrin,bisphosphonate, polyglutamate, polyaspartate, a lipid, cholesterol, asteroid, bile acid, folate, vitamin B12, vitamin A, biotin, or an RGDpeptide or RGD peptide mimetic.

Other examples of ligands include dyes, intercalating agents (e.g.acridines), cross-linkers (e.g. psoralen, mitomycin C), porphyrins(TPPC4, texaphyrin, Sapphyrin), polycyclic aromatic hydrocarbons (e.g.,phenazine, dihydrophenazine), artificial endonucleases (e.g. EDTA),lipophilic molecules, e.g., cholesterol, cholic acid, adamantane aceticacid, 1-pyrene butyric acid, dihydrotestosterone,1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol,borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid,myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid,dimethoxytrityl, or phenoxazine) and peptide conjugates (e.g.,antennapedia peptide, Tat peptide), alkylating agents, phosphate, amino,mercapto, PEG (e.g., PEG-40K), MPEG, [MPEG]₂, polyamino, alkyl,substituted alkyl, radiolabeled markers, enzymes, haptens (e.g. biotin),transport/absorption facilitators (e.g., aspirin, vitamin E, folicacid), synthetic ribonucleases (e.g., imidazole, bisimidazole,histamine, imidazole clusters, acridine-imidazole conjugates, Eu3+complexes of tetraazamacrocycles), dinitrophenyl, HRP, or AP.

Ligands can be proteins, e.g., glycoproteins, or peptides, e.g.,molecules having a specific affinity for a co-ligand, or antibodiese.g., an antibody, that binds to a specified cell type such as a hepaticcell. Ligands can also include hormones and hormone receptors. They canalso include non-peptidic species, such as lipids, lectins,carbohydrates, vitamins, cofactors, multivalent lactose, multivalentgalactose, N-acetyl-galactosamine, N-acetyl-gulucosamine multivalentmannose, or multivalent fucose. The ligand can be, for example, alipopolysaccharide, an activator of p38 MAP kinase, or an activator ofNF-κB.

The ligand can be a substance, e.g., a drug, which can increase theuptake of the iRNA agent into the cell, for example, by disrupting thecell's cytoskeleton, e.g., by disrupting the cell's microtubules,microfilaments, and/or intermediate filaments. The drug can be, forexample, taxon, vincristine, vinblastine, cytochalasin, nocodazole,japlakinolide, latrunculin A, phalloidin, swinholide A, indanocine, ormyoservin.

In some embodiments, a ligand attached to an iRNA as described hereinacts as a pharmacokinetic modulator (PK modulator). PK modulatorsinclude lipophiles, bile acids, steroids, phospholipid analogues,peptides, protein binding agents, PEG, vitamins etc. Exemplary PKmodulators include, but are not limited to, cholesterol, fatty acids,cholic acid, lithocholic acid, dialkylglycerides, diacylglyceride,phospholipids, sphingolipids, naproxen, ibuprofen, vitamin E, biotinetc. Oligonucleotides that comprise a number of phosphorothioatelinkages are also known to bind to serum protein, thus shortoligonucleotides, e.g., oligonucleotides of about 5 bases, 10 bases, 15bases or 20 bases, comprising multiple of phosphorothioate linkages inthe backbone are also amenable to the present invention as ligands (e.g.as PK modulating ligands). In addition, aptamers that bind serumcomponents (e.g. serum proteins) are also suitable for use as PKmodulating ligands in the embodiments described herein.

Ligand-conjugated oligonucleotides of the invention may be synthesizedby the use of an oligonucleotide that bears a pendant reactivefunctionality, such as that derived from the attachment of a linkingmolecule onto the oligonucleotide (described below). This reactiveoligonucleotide may be reacted directly with commercially-availableligands, ligands that are synthesized bearing any of a variety ofprotecting groups, or ligands that have a linking moiety attachedthereto.

The oligonucleotides used in the conjugates of the present invention maybe conveniently and routinely made through the well-known technique ofsolid-phase synthesis. Equipment for such synthesis is sold by severalvendors including, for example, Applied Biosystems (Foster City,Calif.). Any other means for such synthesis known in the art mayadditionally or alternatively be employed. It is also known to usesimilar techniques to prepare other oligonucleotides, such as thephosphorothioates and alkylated derivatives.

In the ligand-conjugated oligonucleotides and ligand-molecule bearingsequence-specific linked nucleosides of the present invention, theoligonucleotides and oligonucleosides may be assembled on a suitable DNAsynthesizer utilizing standard nucleotide or nucleoside precursors, ornucleotide or nucleoside conjugate precursors that already bear thelinking moiety, ligand-nucleotide or nucleoside-conjugate precursorsthat already bear the ligand molecule, or non-nucleoside ligand-bearingbuilding blocks.

When using nucleotide-conjugate precursors that already bear a linkingmoiety, the synthesis of the sequence-specific linked nucleosides istypically completed, and the ligand molecule is then reacted with thelinking moiety to form the ligand-conjugated oligonucleotide. In someembodiments, the oligonucleotides or linked nucleosides of the presentinvention are synthesized by an automated synthesizer usingphosphoramidites derived from ligand-nucleoside conjugates in additionto the standard phosphoramidites and non-standard phosphoramidites thatare commercially available and routinely used in oligonucleotidesynthesis.

A. Lipid Conjugates

In one embodiment, the ligand or conjugate is a lipid or lipid-basedmolecule. Such a lipid or lipid-based molecule preferably binds a serumprotein, e.g., human serum albumin (HSA). An HSA binding ligand allowsfor distribution of the conjugate to a target tissue, e.g., a non-kidneytarget tissue of the body. For example, the target tissue can be theliver, including parenchymal cells of the liver. Other molecules thatcan bind HSA can also be used as ligands. For example, naproxen oraspirin can be used. A lipid or lipid-based ligand can (a) increaseresistance to degradation of the conjugate, (b) increase targeting ortransport into a target cell or cell membrane, and/or (c) can be used toadjust binding to a serum protein, e.g., HSA.

A lipid based ligand can be used to inhibit, e.g., control the bindingof the conjugate to a target tissue. For example, a lipid or lipid-basedligand that binds to HSA more strongly will be less likely to betargeted to the kidney and therefore less likely to be cleared from thebody. A lipid or lipid-based ligand that binds to HSA less strongly canbe used to target the conjugate to the kidney.

In a preferred embodiment, the lipid based ligand binds HSA. Preferably,it binds HSA with a sufficient affinity such that the conjugate will bepreferably distributed to a non-kidney tissue. However, it is preferredthat the affinity not be so strong that the HSA-ligand binding cannot bereversed.

In another preferred embodiment, the lipid based ligand binds HSA weaklyor not at all, such that the conjugate will be preferably distributed tothe kidney. Other moieties that target to kidney cells can also be usedin place of or in addition to the lipid based ligand.

In another aspect, the ligand is a moiety, e.g., a vitamin, which istaken up by a target cell, e.g., a proliferating cell. These areparticularly useful for treating disorders characterized by unwantedcell proliferation, e.g., of the malignant or non-malignant type, e.g.,cancer cells. Exemplary vitamins include vitamin A, E, and K. Otherexemplary vitamins include are B vitamin, e.g., folic acid, B12,riboflavin, biotin, pyridoxal or other vitamins or nutrients taken up bytarget cells such as liver cells. Also included are HSA and low densitylipoprotein (LDL).

B. Cell Permeation Agents

In another aspect, the ligand is a cell-permeation agent, preferably ahelical cell-permeation agent. Preferably, the agent is amphipathic. Anexemplary agent is a peptide such as tat or antennopedia. If the agentis a peptide, it can be modified, including a peptidylmimetic,invertomers, non-peptide or pseudo-peptide linkages, and use of D-aminoacids. The helical agent is preferably an alpha-helical agent, whichpreferably has a lipophilic and a lipophobic phase.

The ligand can be a peptide or peptidomimetic. A peptidomimetic (alsoreferred to herein as an oligopeptidomimetic) is a molecule capable offolding into a defined three-dimensional structure similar to a naturalpeptide. The attachment of peptide and peptidomimetics to iRNA agentscan affect pharmacokinetic distribution of the iRNA, such as byenhancing cellular recognition and absorption. The peptide orpeptidomimetic moiety can be about 5-50 amino acids long, e.g., about 5,10, 15, 20, 25, 30, 35, 40, 45, or 50 amino acids long.

A peptide or peptidomimetic can be, for example, a cell permeationpeptide, cationic peptide, amphipathic peptide, or hydrophobic peptide(e.g., consisting primarily of Tyr, Trp or Phe). The peptide moiety canbe a dendrimer peptide, constrained peptide or crosslinked peptide. Inanother alternative, the peptide moiety can include a hydrophobicmembrane translocation sequence (MTS). An exemplary hydrophobicMTS-containing peptide is RFGF having the amino acid sequenceAAVALLPAVLLALLAP (SEQ ID NO: 13). An RFGF analogue (e.g., amino acidsequence AALLPVLLAAP (SEQ ID NO: 14) containing a hydrophobic MTS canalso be a targeting moiety. The peptide moiety can be a “delivery”peptide, which can carry large polar molecules including peptides,oligonucleotides, and protein across cell membranes. For example,sequences from the HIV Tat protein (GRKKRRQRRRPPQ (SEQ ID NO: 15) andthe Drosophila Antennapedia protein (RQIKIWFQNRRMKWKK (SEQ ID NO: 16)have been found to be capable of functioning as delivery peptides. Apeptide or peptidomimetic can be encoded by a random sequence of DNA,such as a peptide identified from a phage-display library, orone-bead-one-compound (OBOC) combinatorial library (Lam et al., Nature,354:82-84, 1991). Examples of a peptide or peptidomimetic tethered to adsRNA agent via an incorporated monomer unit for cell targeting purposesis an arginine-glycine-aspartic acid (RGD)-peptide, or RGD mimic Apeptide moiety can range in length from about 5 amino acids to about 40amino acids. The peptide moieties can have a structural modification,such as to increase stability or direct conformational properties. Anyof the structural modifications described below can be utilized.

An RGD peptide for use in the compositions and methods of the inventionmay be linear or cyclic, and may be modified, e.g., glycosylated ormethylated, to facilitate targeting to a specific tissue(s).RGD-containing peptides and peptidiomimemtics may include D-amino acids,as well as synthetic RGD mimics. In addition to RGD, one can use othermoieties that target the integrin ligand. Preferred conjugates of thisligand target PECAM-1 or VEGF.

A “cell permeation peptide” is capable of permeating a cell, e.g., amicrobial cell, such as a bacterial or fungal cell, or a mammalian cell,such as a human cell. A microbial cell-permeating peptide can be, forexample, an α-helical linear peptide (e.g., LL-37 or Ceropin P1), adisulfide bond-containing peptide (e.g., α-defensin, β-defensin orbactenecin), or a peptide containing only one or two dominating aminoacids (e.g., PR-39 or indolicidin). A cell permeation peptide can alsoinclude a nuclear localization signal (NLS). For example, a cellpermeation peptide can be a bipartite amphipathic peptide, such as MPG,which is derived from the fusion peptide domain of HIV-1 gp41 and theNLS of SV40 large T antigen (Simeoni et al., Nucl. Acids Res.31:2717-2724, 2003).

C. Carbohydrate Conjugates

In some embodiments of the compositions and methods of the invention, aniRNA oligonucleotide further comprises a carbohydrate. The carbohydrateconjugated iRNA are advantageous for the in vivo delivery of nucleicacids, as well as compositions suitable for in vivo therapeutic use, asdescribed herein. As used herein, “carbohydrate” refers to a compoundwhich is either a carbohydrate per se made up of one or moremonosaccharide units having at least 6 carbon atoms (which can belinear, branched or cyclic) with an oxygen, nitrogen or sulfur atombonded to each carbon atom; or a compound having as a part thereof acarbohydrate moiety made up of one or more monosaccharide units eachhaving at least six carbon atoms (which can be linear, branched orcyclic), with an oxygen, nitrogen or sulfur atom bonded to each carbonatom. Representative carbohydrates include the sugars (mono-, di-, tri-and oligosaccharides containing from about 4, 5, 6, 7, 8, or 9monosaccharide units), and polysaccharides such as starches, glycogen,cellulose and polysaccharide gums. Specific monosaccharides include HBVand above (e.g., HBV, C6, C7, or C8) sugars; di- and trisaccharidesinclude sugars having two or three monosaccharide units (e.g., HBV, C6,C7, or C8).

In one embodiment, a carbohydrate conjugate for use in the compositionsand methods of the invention is a monosaccharide. In one embodiment, themonosaccharide is an N-acetylgalactosamine, such as

In another embodiment, a carbohydrate conjugate for use in thecompositions and methods of the invention is selected from the groupconsisting of:

Another representative carbohydrate conjugate for use in the embodimentsdescribed herein includes, but is not limited to,

when one of X or Y is an oligonucleotide, the other is a hydrogen.

In some embodiments, the carbohydrate conjugate further comprises one ormore additional ligands as described above, such as, but not limited to,a PK modulator and/or a cell permeation peptide.

Additional carbohydrate conjugates suitable for use in the presentinvention include those described in PCT Publication Nos. WO 2014/179620and WO 2014/179627, the entire contents of each of which areincorporated herein by reference.

D. Linkers

In some embodiments, the conjugate or ligand described herein can beattached to an iRNA oligonucleotide with various linkers that can becleavable or non-cleavable.

The term “linker” or “linking group” means an organic moiety thatconnects two parts of a compound, e.g., covalently attaches two parts ofa compound. Linkers typically comprise a direct bond or an atom such asoxygen or sulfur, a unit such as NR8, C(O), C(O)NH, SO, SO₂, SO₂NH or achain of atoms, such as, but not limited to, substituted orunsubstituted alkyl, substituted or unsubstituted alkenyl, substitutedor unsubstituted alkynyl, arylalkyl, arylalkenyl, arylalkynyl,heteroarylalkyl, heteroarylalkenyl, heteroarylalkynyl,heterocyclylalkyl, heterocyclylalkenyl, heterocyclylalkynyl, aryl,heteroaryl, heterocyclyl, cycloalkyl, cycloalkenyl, alkylarylalkyl,alkylarylalkenyl, alkylarylalkynyl, alkenylarylalkyl,alkenylarylalkenyl, alkenylarylalkynyl, alkynylarylalkyl,alkynylarylalkenyl, alkynylarylalkynyl, alkylheteroarylalkyl,alkylheteroarylalkenyl, alkylheteroarylalkynyl, alkenylheteroarylalkyl,alkenylheteroarylalkenyl, alkenylheteroarylalkynyl,alkynylheteroarylalkyl, alkynylheteroarylalkenyl,alkynylheteroarylalkynyl, alkylheterocyclylalkyl,alkylheterocyclylalkenyl, alkylhererocyclylalkynyl,alkenylheterocyclylalkyl, alkenylheterocyclylalkenyl,alkenylheterocyclylalkynyl, alkynylheterocyclylalkyl,alkynylheterocyclylalkenyl, alkynylheterocyclylalkynyl, alkylaryl,alkenylaryl, alkynylaryl, alkylheteroaryl, alkenylheteroaryl,alkynylhereroaryl, which one or more methylenes can be interrupted orterminated by O, S, S(O), SO₂, N(R8), C(O), substituted or unsubstitutedaryl, substituted or unsubstituted heteroaryl, substituted orunsubstituted heterocyclic; where R8 is hydrogen, acyl, aliphatic orsubstituted aliphatic. In one embodiment, the linker is between about1-24 atoms, 2-24, 3-24, 4-24, 5-24, 6-24, 6-18, 7-18, 8-18 atoms, 7-17,8-17, 6-16, 7-16, or 8-16 atoms.

A cleavable linking group is one which is sufficiently stable outsidethe cell, but which upon entry into a target cell is cleaved to releasethe two parts the linker is holding together. In a preferred embodiment,the cleavable linking group is cleaved at least about 10 times, 20,times, 30 times, 40 times, 50 times, 60 times, 70 times, 80 times, 90times or more, or at least about 100 times faster in a target cell orunder a first reference condition (which can, e.g., be selected to mimicor represent intracellular conditions) than in the blood of a subject,or under a second reference condition (which can, e.g., be selected tomimic or represent conditions found in the blood or serum).

Cleavable linking groups are susceptible to cleavage agents, e.g., pH,redox potential or the presence of degradative molecules. Generally,cleavage agents are more prevalent or found at higher levels oractivities inside cells than in serum or blood. Examples of suchdegradative agents include: redox agents which are selected forparticular substrates or which have no substrate specificity, including,e.g., oxidative or reductive enzymes or reductive agents such asmercaptans, present in cells, that can degrade a redox cleavable linkinggroup by reduction; esterases; endosomes or agents that can create anacidic environment, e.g., those that result in a pH of five or lower;enzymes that can hydrolyze or degrade an acid cleavable linking group byacting as a general acid, peptidases (which can be substrate specific),and phosphatases.

A cleavable linkage group, such as a disulfide bond can be susceptibleto pH. The pH of human serum is 7.4, while the average intracellular pHis slightly lower, ranging from about 7.1-7.3. Endosomes have a moreacidic pH, in the range of 5.5-6.0, and lysosomes have an even moreacidic pH at around 5.0. Some linkers will have a cleavable linkinggroup that is cleaved at a preferred pH, thereby releasing a cationiclipid from the ligand inside the cell, or into the desired compartmentof the cell.

A linker can include a cleavable linking group that is cleavable by aparticular enzyme. The type of cleavable linking group incorporated intoa linker can depend on the cell to be targeted. For example, aliver-targeting ligand can be linked to a cationic lipid through alinker that includes an ester group. Liver cells are rich in esterases,and therefore the linker will be cleaved more efficiently in liver cellsthan in cell types that are not esterase-rich. Other cell-types rich inesterases include cells of the lung, renal cortex, and testis.

Linkers that contain peptide bonds can be used when targeting cell typesrich in peptidases, such as liver cells and synoviocytes.

In general, the suitability of a candidate cleavable linking group canbe evaluated by testing the ability of a degradative agent (orcondition) to cleave the candidate linking group. It will also bedesirable to also test the candidate cleavable linking group for theability to resist cleavage in the blood or when in contact with othernon-target tissue. Thus, one can determine the relative susceptibilityto cleavage between a first and a second condition, where the first isselected to be indicative of cleavage in a target cell and the second isselected to be indicative of cleavage in other tissues or biologicalfluids, e.g., blood or serum. The evaluations can be carried out in cellfree systems, in cells, in cell culture, in organ or tissue culture, orin whole animals. It can be useful to make initial evaluations incell-free or culture conditions and to confirm by further evaluations inwhole animals. In preferred embodiments, useful candidate compounds arecleaved at least about 2, 4, 10, 20, 30, 40, 50, 60, 70, 80, 90, orabout 100 times faster in the cell (or under in vitro conditionsselected to mimic intracellular conditions) as compared to blood orserum (or under in vitro conditions selected to mimic extracellularconditions).

i. Redox Cleavable Linking Groups

In one embodiment, a cleavable linking group is a redox cleavablelinking group that is cleaved upon reduction or oxidation. An example ofreductively cleavable linking group is a disulphide linking group(—S—S—). To determine if a candidate cleavable linking group is asuitable “reductively cleavable linking group,” or for example issuitable for use with a particular iRNA moiety and particular targetingagent one can look to methods described herein. For example, a candidatecan be evaluated by incubation with dithiothreitol (DTT), or otherreducing agent using reagents know in the art, which mimic the rate ofcleavage which would be observed in a cell, e.g., a target cell. Thecandidates can also be evaluated under conditions which are selected tomimic blood or serum conditions. In one, candidate compounds are cleavedby at most about 10% in the blood. In other embodiments, usefulcandidate compounds are degraded at least about 2, 4, 10, 20, 30, 40,50, 60, 70, 80, 90, or about 100 times faster in the cell (or under invitro conditions selected to mimic intracellular conditions) as comparedto blood (or under in vitro conditions selected to mimic extracellularconditions). The rate of cleavage of candidate compounds can bedetermined using standard enzyme kinetics assays under conditions chosento mimic intracellular media and compared to conditions chosen to mimicextracellular media.

ii. Phosphate-Based Cleavable Linking Groups

In another embodiment, a cleavable linker comprises a phosphate-basedcleavable linking group. A phosphate-based cleavable linking group iscleaved by agents that degrade or hydrolyze the phosphate group. Anexample of an agent that cleaves phosphate groups in cells are enzymessuch as phosphatases in cells. Examples of phosphate-based linkinggroups are —O—P(O)(ORk)-O—, —O—P(S)(ORk)-O—, —O—P(S)(SRk)-O—,—S—P(O)(ORk)-O—, —O—P(O)(ORk)-S—, —S—P(O)(ORk)-S—, —O—P(S)(ORk)-S—,—S—P(S)(ORk)-O—, —O—P(O)(Rk)-O—, —O—P(S)(Rk)-O—, —S—P(O)(Rk)-O—,—S—P(S)(Rk)-O—, —S—P(O)(Rk)-S—, —O—P(S)(Rk)-S—. Preferred embodimentsare —O—P(O)(OH)—O—, —O—P(S)(OH)—O—, —O—P(S)(SH)—O—, —S—P(O)(OH)—O—,—O—P(O)(OH)—S—, —S—P(O)(OH)—S—, —O—P(S)(OH)—S—, —S—P(S)(OH)—O—,—O—P(O)(H)—O—, —O—P(S)(H)—O—, —S—P(O)(H)—O, —S—P(S)(H)—O—,—S—P(O)(H)—S—, —O—P(S)(H)—S—. A preferred embodiment is —O—P(O)(OH)—O—.These candidates can be evaluated using methods analogous to thosedescribed above.

iii. Acid Cleavable Linking Groups

In another embodiment, a cleavable linker comprises an acid cleavablelinking group. An acid cleavable linking group is a linking group thatis cleaved under acidic conditions. In preferred embodiments acidcleavable linking groups are cleaved in an acidic environment with a pHof about 6.5 or lower (e.g., about 6.0, 5.75, 5.5, 5.25, 5.0, or lower),or by agents such as enzymes that can act as a general acid. In a cell,specific low pH organelles, such as endosomes and lysosomes can providea cleaving environment for acid cleavable linking groups. Examples ofacid cleavable linking groups include but are not limited to hydrazones,esters, and esters of amino acids. Acid cleavable groups can have thegeneral formula —C═NN—, C(O)O, or —OC(O). A preferred embodiment is whenthe carbon attached to the oxygen of the ester (the alkoxy group) is anaryl group, substituted alkyl group, or tertiary alkyl group such asdimethyl pentyl or t-butyl. These candidates can be evaluated usingmethods analogous to those described above.

iv. Ester-Based Linking Groups

In another embodiment, a cleavable linker comprises an ester-basedcleavable linking group. An ester-based cleavable linking group iscleaved by enzymes such as esterases and amidases in cells. Examples ofester-based cleavable linking groups include but are not limited toesters of alkylene, alkenylene and alkynylene groups. Ester cleavablelinking groups have the general formula —C(O)O—, or —OC(O)—. Thesecandidates can be evaluated using methods analogous to those describedabove.

v. Peptide-Based Cleaving Groups

In yet another embodiment, a cleavable linker comprises a peptide-basedcleavable linking group. A peptide-based cleavable linking group iscleaved by enzymes such as peptidases and proteases in cells.Peptide-based cleavable linking groups are peptide bonds formed betweenamino acids to yield oligopeptides (e.g., dipeptides, tripeptides etc.)and polypeptides. Peptide-based cleavable groups do not include theamide group (—C(O)NH—). The amide group can be formed between anyalkylene, alkenylene or alkynelene. A peptide bond is a special type ofamide bond formed between amino acids to yield peptides and proteins.The peptide based cleavage group is generally limited to the peptidebond (i.e., the amide bond) formed between amino acids yielding peptidesand proteins and does not include the entire amide functional group.Peptide-based cleavable linking groups have the general formula—NHCHRAC(O)NHCHRBC(O)—, where RA and RB are the R groups of the twoadjacent amino acids. These candidates can be evaluated using methodsanalogous to those described above.

In one embodiment, an iRNA of the invention is conjugated to acarbohydrate through a linker. Non-limiting examples of iRNAcarbohydrate conjugates with linkers of the compositions and methods ofthe invention include, but are not limited to,

when one of X or Y is an oligonucleotide, the other is a hydrogen.

In certain embodiments of the compositions and methods of the invention,a ligand is one or more “GalNAc” (N-acetylgalactosamine) derivativesattached through a bivalent or trivalent branched linker.

In one embodiment, a dsRNA of the invention is conjugated to a bivalentor trivalent branched linker selected from the group of structures shownin any of formula (XXXII)-(XXXV):

wherein:

q2A, q2B, q3A, q3B, q4A, q4B, q5A, q5B and q5C represent independentlyfor each occurrence 0-20 and wherein the repeating unit can be the sameor different;

P^(2A), P^(2B), P^(3A), P^(3B), P^(4A), P^(4B), P^(5A), P^(5B), P^(5C),T^(2A), T^(2B), T^(3A), T^(3B), T^(4A), T^(4B), T^(4A), T^(5B), T^(5C)are each independently for each occurrence absent, CO, NH, O, S, OC(O),NHC(O), CH₂, CH₂NH or CH₂O;

Q^(2A), Q^(2B), Q^(3A), Q^(3B), Q^(4A), Q^(4B), Q^(5A), Q^(5B), Q^(5C)are independently for each occurrence absent, alkylene, substitutedalkylene wherein one or more methylenes can be interrupted or terminatedby one or more of O, S, S(O), SO₂, N(R^(N)), C(R′)═C(R″), C≡C or C(O);

R^(2A), R^(2B), R^(3A), R^(3B), R^(4A), R^(4B), R^(5A), R^(5B), R^(5C)are each independently for each occurrence absent, NH, O, S, CH₂, C(O)O,C(O)NH, NHCH(R^(a))C(O), —C(O)—CH(R^(a))—NH—, CO, CH═N—O,

or heterocyclyl;

L^(2A), L^(2B), L^(3A), L^(3B), L^(4A), L^(4B), L^(5A), L^(5B) andL^(5C) represent the ligand; i.e. each independently for each occurrencea monosaccharide (such as GalNAc), disaccharide, trisaccharide,tetrasaccharide, oligosaccharide, or polysaccharide; and R^(a) is H oramino acid side chain. Trivalent conjugating GalNAc derivatives areparticularly useful for use with RNAi agents for inhibiting theexpression of a target gene, such as those of formula (XXXV):

-   -   wherein L^(5A), L^(5B) and L^(5C) represent a monosaccharide,        such as GalNAc derivative.

Examples of suitable bivalent and trivalent branched linker groupsconjugating GalNAc derivatives include, but are not limited to, thestructures recited above as formulas II, VII, XI, X, and XIII.

Representative U.S. patents that teach the preparation of RNA conjugatesinclude, but are not limited to, U.S. Pat. Nos. 4,828,979; 4,948,882;5,218,105; 5,525,465; 5,541,313; 5,545,730; 5,552,538; 5,578,717,5,580,731; 5,591,584; 5,109,124; 5,118,802; 5,138,045; 5,414,077;5,486,603; 5,512,439; 5,578,718; 5,608,046; 4,587,044; 4,605,735;4,667,025; 4,762,779; 4,789,737; 4,824,941; 4,835,263; 4,876,335;4,904,582; 4,958,013; 5,082,830; 5,112,963; 5,214,136; 5,082,830;5,112,963; 5,214,136; 5,245,022; 5,254,469; 5,258,506; 5,262,536;5,272,250; 5,292,873; 5,317,098; 5,371,241, 5,391,723; 5,416,203,5,451,463; 5,510,475; 5,512,667; 5,514,785; 5,565,552; 5,567,810;5,574,142; 5,585,481; 5,587,371; 5,595,726; 5,597,696; 5,599,923;5,599,928 and 5,688,941; 6,294,664; 6,320,017; 6,576,752; 6,783,931;6,900,297; 7,037,646; 8,106,022, the entire contents of each of whichare hereby incorporated herein by reference.

It is not necessary for all positions in a given compound to beuniformly modified, and in fact more than one of the aforementionedmodifications can be incorporated in a single compound or even at asingle nucleoside within an iRNA. The present invention also includesiRNA compounds that are chimeric compounds.

“Chimeric” iRNA compounds or “chimeras,” in the context of thisinvention, are iRNA compounds, preferably dsRNAs, which contain two ormore chemically distinct regions, each made up of at least one monomerunit, i.e., a nucleotide in the case of a dsRNA compound. These iRNAstypically contain at least one region wherein the RNA is modified so asto confer upon the iRNA increased resistance to nuclease degradation,increased cellular uptake, and/or increased binding affinity for thetarget nucleic acid. An additional region of the iRNA can serve as asubstrate for enzymes capable of cleaving RNA:DNA or RNA:RNA hybrids. Byway of example, RNase H is a cellular endonuclease which cleaves the RNAstrand of an RNA:DNA duplex. Activation of RNase H, therefore, resultsin cleavage of the RNA target, thereby greatly enhancing the efficiencyof iRNA inhibition of gene expression. Consequently, comparable resultscan often be obtained with shorter iRNAs when chimeric dsRNAs are used,compared to phosphorothioate deoxy dsRNAs hybridizing to the same targetregion. Cleavage of the RNA target can be routinely detected by gelelectrophoresis and, if necessary, associated nucleic acid hybridizationtechniques known in the art.

In certain instances, the RNA of an iRNA can be modified by a non-ligandgroup. A number of non-ligand molecules have been conjugated to iRNAs inorder to enhance the activity, cellular distribution or cellular uptakeof the iRNA, and procedures for performing such conjugations areavailable in the scientific literature. Such non-ligand moieties haveincluded lipid moieties, such as cholesterol (Kubo, T. et al., Biochem.Biophys. Res. Comm., 2007, 365(1):54-61; Letsinger et al., Proc. Natl.Acad. Sci. USA, 1989, 86:6553), cholic acid (Manoharan et al., Bioorg.Med. Chem. Lett., 1994, 4:1053), a thioether, e.g., hexyl-S-tritylthiol(Manoharan et al., Ann. N. Y. Acad. Sci., 1992, 660:306; Manoharan etal., Bioorg. Med. Chem. Let., 1993, 3:2765), a thiocholesterol(Oberhauser et al., Nucl. Acids Res., 1992, 20:533), an aliphatic chain,e.g., dodecandiol or undecyl residues (Saison-Behmoaras et al., EMBO J.,1991, 10:111; Kabanov et al., FEBS Lett., 1990, 259:327; Svinarchuk etal., Biochimie, 1993, 75:49), a phospholipid, e.g.,di-hexadecyl-rac-glycerol or triethylammonium1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate (Manoharan et al.,Tetrahedron Lett., 1995, 36:3651; Shea et al., Nucl. Acids Res., 1990,18:3777), a polyamine or a polyethylene glycol chain (Manoharan et al.,Nucleosides & Nucleotides, 1995, 14:969), or adamantane acetic acid(Manoharan et al., Tetrahedron Lett., 1995, 36:3651), a palmityl moiety(Mishra et al., Biochim. Biophys. Acta, 1995, 1264:229), or anoctadecylamine or hexylamino-carbonyl-oxycholesterol moiety (Crooke etal., J. Pharmacol. Exp. Ther., 1996, 277:923). Representative UnitedStates patents that teach the preparation of such RNA conjugates havebeen listed above. Typical conjugation protocols involve the synthesisof an RNAs bearing an aminolinker at one or more positions of thesequence. The amino group is then reacted with the molecule beingconjugated using appropriate coupling or activating reagents. Theconjugation reaction can be performed either with the RNA still bound tothe solid support or following cleavage of the RNA, in solution phase.Purification of the RNA conjugate by HPLC typically affords the pureconjugate.

V. Delivery of an iRNA of the Invention

The delivery of an iRNA of the invention to a cell e.g., a cell within asubject, such as a human subject (e.g., a subject in need thereof, suchas a subject having a disease, disorder or condition associated withPNPLA3 gene expression) can be achieved in a number of different ways.For example, delivery may be performed by contacting a cell with an iRNAof the invention either in vitro or in vivo. In vivo delivery may alsobe performed directly by administering a composition comprising an iRNA,e.g., a dsRNA, to a subject. Alternatively, in vivo delivery may beperformed indirectly by administering one or more vectors that encodeand direct the expression of the iRNA. These alternatives are discussedfurther below.

In general, any method of delivering a nucleic acid molecule (in vitroor in vivo) can be adapted for use with an iRNA of the invention (seee.g., Akhtar S. and Julian R L. (1992) Trends Cell. Biol. 2(5):139-144and WO94/02595, which are incorporated herein by reference in theirentireties). For in vivo delivery, factors to consider in order todeliver an iRNA molecule include, for example, biological stability ofthe delivered molecule, prevention of non-specific effects, andaccumulation of the delivered molecule in the target tissue. Thenon-specific effects of an iRNA can be minimized by localadministration, for example, by direct injection or implantation into atissue or topically administering the preparation. Local administrationto a treatment site maximizes local concentration of the agent, limitsthe exposure of the agent to systemic tissues that can otherwise beharmed by the agent or that can degrade the agent, and permits a lowertotal dose of the iRNA molecule to be administered. Several studies haveshown successful knockdown of gene products when an iRNA is administeredlocally. For example, intraocular delivery of a VEGF dsRNA byintravitreal injection in cynomolgus monkeys (Tolentino, M J., et al(2004) Retina 24:132-138) and subretinal injections in mice (Reich, SJ., et al (2003) Mol. Vis. 9:210-216) were both shown to preventneovascularization in an experimental model of age-related maculardegeneration. In addition, direct intratumoral injection of a dsRNA inmice reduces tumor volume (Pille, J., et al (2005) Mol. Ther.11:267-274) and can prolong survival of tumor-bearing mice (Kim, W J.,et al (2006) Mol. Ther. 14:343-350; Li, S., et al (2007) Mol. Ther.15:515-523). RNA interference has also shown success with local deliveryto the CNS by direct injection (Dorn, G., et al. (2004) Nucleic Acids32:e49; Tan, P H., et al (2005) Gene Ther. 12:59-66; Makimura, H., et al(2002) BMC Neurosci. 3:18; Shishkina, G T., et al (2004) Neuroscience129:521-528; Thakker, E R., et al (2004) Proc. Natl. Acad. Sci. U.S.A.101:17270-17275; Akaneya, Y., et al (2005) J. Neurophysiol. 93:594-602)and to the lungs by intranasal administration (Howard, K A., et al(2006) Mol. Ther. 14:476-484; Zhang, X., et al (2004) J. Biol. Chem.279:10677-10684; Bitko, V., et al (2005) Nat. Med. 11:50-55). Foradministering an iRNA systemically for the treatment of a disease, theRNA can be modified or alternatively delivered using a drug deliverysystem; both methods act to prevent the rapid degradation of the dsRNAby endo- and exo-nucleases in vivo. Modification of the RNA or thepharmaceutical carrier can also permit targeting of the iRNA compositionto the target tissue and avoid undesirable off-target effects. iRNAmolecules can be modified by chemical conjugation to lipophilic groupssuch as cholesterol to enhance cellular uptake and prevent degradation.For example, an iRNA directed against ApoB conjugated to a lipophiliccholesterol moiety was injected systemically into mice and resulted inknockdown of apoB mRNA in both the liver and jejunum (Soutschek, J., etal (2004) Nature 432:173-178). Conjugation of an iRNA to an aptamer hasbeen shown to inhibit tumor growth and mediate tumor regression in amouse model of prostate cancer (McNamara, J O., et al (2006) Nat.Biotechnol. 24:1005-1015). In an alternative embodiment, the iRNA can bedelivered using drug delivery systems such as a nanoparticle, adendrimer, a polymer, liposomes, or a cationic delivery system.Positively charged cationic delivery systems facilitate binding of aniRNA molecule (negatively charged) and also enhance interactions at thenegatively charged cell membrane to permit efficient uptake of an iRNAby the cell. Cationic lipids, dendrimers, or polymers can either bebound to an iRNA, or induced to form a vesicle or micelle (see e.g., KimS H., et al (2008) Journal of Controlled Release 129(2):107-116) thatencases an iRNA. The formation of vesicles or micelles further preventsdegradation of the iRNA when administered systemically. Methods formaking and administering cationic-iRNA complexes are well within theabilities of one skilled in the art (see e.g., Sorensen, D R., et al(2003) J. Mol. Biol 327:761-766; Verma, U N., et al (2003) Clin. CancerRes. 9:1291-1300; Arnold, A S et al (2007) J. Hypertens. 25:197-205,which are incorporated herein by reference in their entirety). Somenon-limiting examples of drug delivery systems useful for systemicdelivery of iRNAs include DOTAP (Sorensen, D R., et al (2003), supra;Verma, U N., et al (2003), supra), Oligofectamine, “solid nucleic acidlipid particles” (Zimmermann, T S., et al (2006) Nature 441:111-114),cardiolipin (Chien, P Y., et al (2005) Cancer Gene Ther. 12:321-328;Pal, A., et al (2005) Int J. Oncol. 26:1087-1091), polyethyleneimine(Bonnet M E., et al (2008) Pharm. Res. August 16 Epub ahead of print;Aigner, A. (2006) J. Biomed. Biotechnol. 71659), Arg-Gly-Asp (RGD)peptides (Liu, S. (2006) Mol. Pharm. 3:472-487), and polyamidoamines(Tomalia, D A., et al (2007) Biochem. Soc. Trans. 35:61-67; Yoo, H., etal (1999) Pharm. Res. 16:1799-1804). In some embodiments, an iRNA formsa complex with cyclodextrin for systemic administration. Methods foradministration and pharmaceutical compositions of iRNAs andcyclodextrins can be found in U.S. Pat. No. 7,427,605, which is hereinincorporated by reference in its entirety.

A. Vector Encoded iRNAs of the Invention

iRNA targeting the PNPLA3 gene can be expressed from transcription unitsinserted into DNA or RNA vectors (see, e.g., Couture, A, et al., TIG.(1996), 12:5-10; Skillern, A., et al., International PCT Publication No.WO 00/22113, Conrad, International PCT Publication No. WO 00/22114, andConrad, U.S. Pat. No. 6,054,299). Expression can be transient (on theorder of hours to weeks) or sustained (weeks to months or longer),depending upon the specific construct used and the target tissue or celltype. These transgenes can be introduced as a linear construct, acircular plasmid, or a viral vector, which can be an integrating ornon-integrating vector. The transgene can also be constructed to permitit to be inherited as an extrachromosomal plasmid (Gassmann, et al.,Proc. Natl. Acad. Sci. USA (1995) 92:1292).

The individual strand or strands of an iRNA can be transcribed from apromoter on an expression vector. Where two separate strands are to beexpressed to generate, for example, a dsRNA, two separate expressionvectors can be co-introduced (e.g., by transfection or infection) into atarget cell. Alternatively each individual strand of a dsRNA can betranscribed by promoters both of which are located on the sameexpression plasmid. In one embodiment, a dsRNA is expressed as invertedrepeat polynucleotides joined by a linker polynucleotide sequence suchthat the dsRNA has a stem and loop structure.

iRNA expression vectors are generally DNA plasmids or viral vectors.Expression vectors compatible with eukaryotic cells, preferably thosecompatible with vertebrate cells, can be used to produce recombinantconstructs for the expression of an iRNA as described herein. Eukaryoticcell expression vectors are well known in the art and are available froma number of commercial sources. Typically, such vectors are providedcontaining convenient restriction sites for insertion of the desirednucleic acid segment. Delivery of iRNA expressing vectors can besystemic, such as by intravenous or intramuscular administration, byadministration to target cells ex-planted from the patient followed byreintroduction into the patient, or by any other means that allows forintroduction into a desired target cell.

iRNA expression plasmids can be transfected into target cells as acomplex with cationic lipid carriers (e.g., Oligofectamine) ornon-cationic lipid-based carriers (e.g., Transit-TKO™). Multiple lipidtransfections for iRNA-mediated knockdowns targeting different regionsof a target RNA over a period of a week or more are also contemplated bythe invention. Successful introduction of vectors into host cells can bemonitored using various known methods. For example, transienttransfection can be signaled with a reporter, such as a fluorescentmarker, such as Green Fluorescent Protein (GFP). Stable transfection ofcells ex vivo can be ensured using markers that provide the transfectedcell with resistance to specific environmental factors (e.g.,antibiotics and drugs), such as hygromycin B resistance.

Viral vector systems which can be utilized with the methods andcompositions described herein include, but are not limited to, (a)adenovirus vectors; (b) retrovirus vectors, including but not limited tolentiviral vectors, moloney murine leukemia virus, etc.; (c)adeno-associated virus vectors; (d) herpes simplex virus vectors; (e) SV40 vectors; (f) polyoma virus vectors; (g) papilloma virus vectors; (h)picornavirus vectors; (i) pox virus vectors such as an orthopox, e.g.,vaccinia virus vectors or avipox, e.g. canary pox or fowl pox; and (j) ahelper-dependent or gutless adenovirus. Replication-defective virusescan also be advantageous. Different vectors will or will not becomeincorporated into the cells' genome. The constructs can include viralsequences for transfection, if desired. Alternatively, the construct canbe incorporated into vectors capable of episomal replication, e.g. EPVand EBV vectors. Constructs for the recombinant expression of an iRNAwill generally require regulatory elements, e.g., promoters, enhancers,etc., to ensure the expression of the iRNA in target cells. Otheraspects to consider for vectors and constructs are further describedbelow.

Vectors useful for the delivery of an iRNA will include regulatoryelements (promoter, enhancer, etc.) sufficient for expression of theiRNA in the desired target cell or tissue. The regulatory elements canbe chosen to provide either constitutive or regulated/inducibleexpression.

Expression of the iRNA can be precisely regulated, for example, by usingan inducible regulatory sequence that is sensitive to certainphysiological regulators, e.g., circulating glucose levels, or hormones(Docherty et al., 1994, FASEB J. 8:20-24). Such inducible expressionsystems, suitable for the control of dsRNA expression in cells or inmammals include, for example, regulation by ecdysone, by estrogen,progesterone, tetracycline, chemical inducers of dimerization, andisopropyl-beta-D1-thiogalactopyranoside (IPTG). A person skilled in theart would be able to choose the appropriate regulatory/promoter sequencebased on the intended use of the iRNA transgene.

Viral vectors that contain nucleic acid sequences encoding an iRNA canbe used. For example, a retroviral vector can be used (see Miller etal., Meth. Enzymol. 217:581-599 (1993)). These retroviral vectorscontain the components necessary for the correct packaging of the viralgenome and integration into the host cell DNA. The nucleic acidsequences encoding an iRNA are cloned into one or more vectors, whichfacilitate delivery of the nucleic acid into a patient. More detailabout retroviral vectors can be found, for example, in Boesen et al.,Biotherapy 6:291-302 (1994), which describes the use of a retroviralvector to deliver the mdr1 gene to hematopoietic stem cells in order tomake the stem cells more resistant to chemotherapy. Other referencesillustrating the use of retroviral vectors in gene therapy are: Cloweset al., J. Clin. Invest. 93:644-651 (1994); Kiem et al., Blood83:1467-1473 (1994); Salmons and Gunzberg, Human Gene Therapy 4:129-141(1993); and Grossman and Wilson, Curr. Opin. in Genetics and Devel.3:110-114 (1993). Lentiviral vectors contemplated for use include, forexample, the HIV based vectors described in U.S. Pat. Nos. 6,143,520;5,665,557; and 5,981,276, which are herein incorporated by reference.

Adenoviruses are also contemplated for use in delivery of iRNAs of theinvention. Adenoviruses are especially attractive vehicles, e.g., fordelivering genes to respiratory epithelia. Adenoviruses naturally infectrespiratory epithelia where they cause a mild disease. Other targets foradenovirus-based delivery systems are liver, the central nervous system,endothelial cells, and muscle. Adenoviruses have the advantage of beingcapable of infecting non-dividing cells. Kozarsky and Wilson, CurrentOpinion in Genetics and Development 3:499-503 (1993) present a review ofadenovirus-based gene therapy. Bout et al., Human Gene Therapy 5:3-10(1994) demonstrated the use of adenovirus vectors to transfer genes tothe respiratory epithelia of rhesus monkeys. Other instances of the useof adenoviruses in gene therapy can be found in Rosenfeld et al.,Science 252:431-434 (1991); Rosenfeld et al., Cell 68:143-155 (1992);Mastrangeli et al., J. Clin. Invest. 91:225-234 (1993); PCT PublicationWO94/12649; and Wang, et al., Gene Therapy 2:775-783 (1995). A suitableAV vector for expressing an iRNA featured in the invention, a method forconstructing the recombinant AV vector, and a method for delivering thevector into target cells, are described in Xia H et al. (2002), Nat.Biotech. 20: 1006-1010.

Adeno-associated virus (AAV) vectors may also be used to delivery aniRNA of the invention (Walsh et al., Proc. Soc. Exp. Biol. Med.204:289-300 (1993); U.S. Pat. No. 5,436,146). In one embodiment, theiRNA can be expressed as two separate, complementary single-stranded RNAmolecules from a recombinant AAV vector having, for example, either theU6 or H1 RNA promoters, or the cytomegalovirus (CMV) promoter. SuitableAAV vectors for expressing the dsRNA featured in the invention, methodsfor constructing the recombinant AV vector, and methods for deliveringthe vectors into target cells are described in Samulski R et al. (1987),J. Virol. 61: 3096-3101; Fisher K J et al. (1996), J. Virol, 70:520-532; Samulski R et al. (1989), J. Virol. 63: 3822-3826; U.S. Pat.No. 5,252,479; U.S. Pat. No. 5,139,941; International Patent ApplicationNo. WO 94/13788; and International Patent Application No. WO 93/24641,the entire disclosures of which are herein incorporated by reference.

Another viral vector suitable for delivery of an iRNA of the inevtion isa pox virus such as a vaccinia virus, for example an attenuated vacciniasuch as Modified Virus Ankara (MVA) or NYVAC, an avipox such as fowl poxor canary pox.

The tropism of viral vectors can be modified by pseudotyping the vectorswith envelope proteins or other surface antigens from other viruses, orby substituting different viral capsid proteins, as appropriate. Forexample, lentiviral vectors can be pseudotyped with surface proteinsfrom vesicular stomatitis virus (VSV), rabies, Ebola, Mokola, and thelike. AAV vectors can be made to target different cells by engineeringthe vectors to express different capsid protein serotypes; see, e.g.,Rabinowitz J E et al. (2002), J Virol 76:791-801, the entire disclosureof which is herein incorporated by reference.

The pharmaceutical preparation of a vector can include the vector in anacceptable diluent, or can include a slow release matrix in which thegene delivery vehicle is imbedded. Alternatively, where the completegene delivery vector can be produced intact from recombinant cells,e.g., retroviral vectors, the pharmaceutical preparation can include oneor more cells which produce the gene delivery system.

VI. Pharmaceutical Compositions of the Invention

The present invention also includes pharmaceutical compositions andformulations which include the iRNAs of the invention. In oneembodiment, provided herein are pharmaceutical compositions containingan iRNA, as described herein, and a pharmaceutically acceptable carrier.The pharmaceutical compositions containing the iRNA are useful fortreating a disease or disorder associated with the expression oractivity of an PNPLA3 gene.

Such pharmaceutical compositions are formulated based on the mode ofdelivery. One example is compositions that are formulated for systemicadministration via parenteral delivery, e.g., by subcutaneous (SC),intramuscular, (IM), or intravenous (IV) delivery. Another example iscompositions that are formulated for direct delivery into the brainparenchyma, e.g., by infusion into the brain, such as by continuous pumpinfusion. The pharmaceutical compositions of the invention may beadministered in dosages sufficient to inhibit expression of an PNPLA3gene.

The pharmaceutical compositions of the invention may be administered indosages sufficient to inhibit expression of a PNPLA3 gene. In general, asuitable dose of an iRNA of the invention will be in the range of about0.001 to about 200.0 milligrams per kilogram body weight of therecipient per day, generally in the range of about 1 to 50 mg perkilogram body weight per day. For example, the dsRNA can be administeredat about 0.01 mg/kg, about 0.05 mg/kg, about 0.5 mg/kg, about 1 mg/kg,about 1.5 mg/kg, about 2 mg/kg, about 3 mg/kg, about 10 mg/kg, about 20mg/kg, about 30 mg/kg, about 40 mg/kg, or about 50 mg/kg per singledose. A repeat-dose regimine may include administration of a therapeuticamount of iRNA on a regular basis, such as every other day or once ayear. In certain embodiments, the iRNA is administered about once permonth to about once per quarter (i.e., about once every three months).After an initial treatment regimen, the treatments can be administeredon a less frequent basis.

The skilled artisan will appreciate that certain factors can influencethe dosage and timing required to effectively treat a subject, includingbut not limited to the severity of the disease or disorder, previoustreatments, the general health and/or age of the subject, and otherdiseases present. Moreover, treatment of a subject with atherapeutically effective amount of a composition can include a singletreatment or a series of treatments. Estimates of effective dosages andin vivo half-lives for the individual iRNAs encompassed by the inventioncan be made using conventional methodologies or on the basis of in vivotesting using an appropriate animal model, as known in the art.

Advances in mouse genetics have generated a number of mouse models forthe study of various human diseases, such as a disorder that wouldbenefit from reduction in the expression of PNPLA3. Such models can beused for in vivo testing of an agent, as well as for determining atherapeutically effective dose. Suitable dietary and genetic mousemodels are reviewed in Kanuri and Bergheim (Int. J. Mol. Sci. (2013)14:11963-11980).

The pharmaceutical compositions of the present invention can beadministered in a number of ways depending upon whether local orsystemic treatment is desired and upon the area to be treated.Administration can be topical (e.g., by a transdermal patch), pulmonary,e.g., by inhalation or insufflation of powders or aerosols, including bynebulizer; intratracheal, intranasal, epidermal and transdermal, oral orparenteral. Parenteral administration includes intravenous,intraarterial, subcutaneous, intraperitoneal or intramuscular injectionor infusion; subdermal, e.g., via an implanted device; or intracranial,e.g., by intraparenchymal, intrathecal or intraventricular,administration.

The iRNA can be delivered in a manner to target a particular tissue suchas the liver (e.g., the hepatocytes of the liver).

Pharmaceutical compositions and formulations for topical administrationcan include transdermal patches, ointments, lotions, creams, gels,drops, suppositories, sprays, liquids and powders. Conventionalpharmaceutical carriers, aqueous, powder or oily bases, thickeners andthe like can be necessary or desirable. Coated condoms, gloves and thelike can also be useful. Suitable topical formulations include those inwhich the iRNAs featured in the invention are in admixture with atopical delivery agent such as lipids, liposomes, fatty acids, fattyacid esters, steroids, chelating agents and surfactants. Suitable lipidsand liposomes include neutral (e.g., dioleoylphosphatidyl DOPEethanolamine, dimyristoylphosphatidyl choline DMPC,distearolyphosphatidyl choline) negative (e.g., dimyristoylphosphatidylglycerol DMPG) and cationic (e.g., dioleoyltetramethylaminopropyl DOTAPand dioleoylphosphatidyl ethanolamine DOTMA). iRNAs featured in theinvention can be encapsulated within liposomes or can form complexesthereto, in particular to cationic liposomes. Alternatively, iRNAs canbe complexed to lipids, in particular to cationic lipids. Suitable fattyacids and esters include but are not limited to arachidonic acid, oleicacid, eicosanoic acid, lauric acid, caprylic acid, capric acid, myristicacid, palmitic acid, stearic acid, linoleic acid, linolenic acid,dicaprate, tricaprate, monoolein, dilaurin, glyceryl 1-monocaprate,1-dodecylazacycloheptan-2-one, an acylcarnitine, an acylcholine, or aC₁₋₂₀ alkyl ester (e.g., isopropylmyristate IPM), monoglyceride,diglyceride or pharmaceutically acceptable salt thereof). Topicalformulations are described in detail in U.S. Pat. No. 6,747,014, whichis incorporated herein by reference.

A. iRNA Formulations Comprising Membranous Molecular Assemblies

An iRNA for use in the compositions and methods of the invention can beformulated for delivery in a membranous molecular assembly, e.g., aliposome or a micelle. As used herein, the term “liposome” refers to avesicle composed of amphiphilic lipids arranged in at least one bilayer,e.g., one bilayer or a plurality of bilayers. Liposomes includeunilamellar and multilamellar vesicles that have a membrane formed froma lipophilic material and an aqueous interior. The aqueous portioncontains the iRNA composition. The lipophilic material isolates theaqueous interior from an aqueous exterior, which typically does notinclude the iRNA composition, although in some examples, it may.Liposomes are useful for the transfer and delivery of active ingredientsto the site of action. Because the liposomal membrane is structurallysimilar to biological membranes, when liposomes are applied to a tissue,the liposomal bilayer fuses with bilayer of the cellular membranes. Asthe merging of the liposome and cell progresses, the internal aqueouscontents that include the iRNA are delivered into the cell where theiRNA can specifically bind to a target RNA and can mediate iRNA. In somecases the liposomes are also specifically targeted, e.g., to direct theiRNA to particular cell types.

A liposome containing an iRNA agent can be prepared by a variety ofmethods. In one example, the lipid component of a liposome is dissolvedin a detergent so that micelles are formed with the lipid component. Forexample, the lipid component can be an amphipathic cationic lipid orlipid conjugate. The detergent can have a high critical micelleconcentration and may be nonionic. Exemplary detergents include cholate,CHAPS, octylglucoside, deoxycholate, and lauroyl sarcosine. The iRNAagent preparation is then added to the micelles that include the lipidcomponent. The cationic groups on the lipid interact with the iRNA agentand condense around the iRNA agent to form a liposome. Aftercondensation, the detergent is removed, e.g., by dialysis, to yield aliposomal preparation of iRNA agent.

If necessary a carrier compound that assists in condensation can beadded during the condensation reaction, e.g., by controlled addition.For example, the carrier compound can be a polymer other than a nucleicacid (e.g., spermine or spermidine). pH can also adjusted to favorcondensation.

Methods for producing stable polynucleotide delivery vehicles, whichincorporate a polynucleotide/cationic lipid complex as structuralcomponents of the delivery vehicle, are further described in, e.g., WO96/37194, the entire contents of which are incorporated herein byreference. Liposome formation can also include one or more aspects ofexemplary methods described in Felgner, P. L. et al., Proc. Natl. Acad.Sci., USA 8:7413-7417, 1987; U.S. Pat. No. 4,897,355; U.S. Pat. No.5,171,678; Bangham, et al. M. Mol. Biol. 23:238, 1965; Olson, et al.Biochim. Biophys. Acta 557:9, 1979; Szoka, et al. Proc. Natl. Acad. Sci.75: 4194, 1978; Mayhew, et al. Biochim. Biophys. Acta 775:169, 1984;Kim, et al. Biochim. Biophys. Acta 728:339, 1983; and Fukunaga, et al.Endocrinol. 115:757, 1984. Commonly used techniques for preparing lipidaggregates of appropriate size for use as delivery vehicles includesonication and freeze-thaw plus extrusion (see, e.g., Mayer, et al.Biochim. Biophys. Acta 858:161, 1986). Microfluidization can be usedwhen consistently small (50 to 200 nm) and relatively uniform aggregatesare desired (Mayhew, et al. Biochim. Biophys. Acta 775:169, 1984). Thesemethods are readily adapted to packaging iRNA agent preparations intoliposomes.

Liposomes fall into two broad classes. Cationic liposomes are positivelycharged liposomes which interact with the negatively charged nucleicacid molecules to form a stable complex. The positively charged nucleicacid/liposome complex binds to the negatively charged cell surface andis internalized in an endosome. Due to the acidic pH within theendosome, the liposomes are ruptured, releasing their contents into thecell cytoplasm (Wang et al., Biochem. Biophys. Res. Commun., 1987, 147,980-985).

Liposomes which are pH-sensitive or negatively-charged, entrap nucleicacids rather than complex with it. Since both the nucleic acid and thelipid are similarly charged, repulsion rather than complex formationoccurs. Nevertheless, some nucleic acid is entrapped within the aqueousinterior of these liposomes. pH-sensitive liposomes have been used todeliver nucleic acids encoding the thymidine kinase gene to cellmonolayers in culture. Expression of the exogenous gene was detected inthe target cells (Zhou et al., Journal of Controlled Release, 1992, 19,269-274).

One major type of liposomal composition includes phospholipids otherthan naturally-derived phosphatidylcholine. Neutral liposomecompositions, for example, can be formed from dimyristoylphosphatidylcholine (DMPC) or dipalmitoyl phosphatidylcholine (DPPC).Anionic liposome compositions generally are formed from dimyristoylphosphatidylglycerol, while anionic fusogenic liposomes are formedprimarily from dioleoyl phosphatidylethanolamine (DOPE). Another type ofliposomal composition is formed from phosphatidylcholine (PC) such as,for example, soybean PC, and egg PC. Another type is formed frommixtures of phospholipid and/or phosphatidylcholine and/or cholesterol.

Examples of other methods to introduce liposomes into cells in vitro andin vivo include U.S. Pat. No. 5,283,185; U.S. Pat. No. 5,171,678; WO94/00569; WO 93/24640; WO 91/16024; Felgner, J. Biol. Chem. 269:2550,1994; Nabel, Proc. Natl. Acad. Sci. 90:11307, 1993; Nabel, Human GeneTher. 3:649, 1992; Gershon, Biochem. 32:7143, 1993; and Strauss EMBO J.11:417, 1992.

Non-ionic liposomal systems have also been examined to determine theirutility in the delivery of drugs to the skin, in particular systemscomprising non-ionic surfactant and cholesterol. Non-ionic liposomalformulations comprising Novasome™ I (glyceryldilaurate/cholesterol/polyoxyethylene-10-stearyl ether) and Novasome™ II(glyceryl distearate/cholesterol/polyoxyethylene-10-stearyl ether) wereused to deliver cyclosporin-A into the dermis of mouse skin. Resultsindicated that such non-ionic liposomal systems were effective infacilitating the deposition of cyclosporine A into different layers ofthe skin (Hu et al. S.T.P.Pharma. Sci., 1994, 4(6) 466).

Liposomes also include “sterically stabilized” liposomes, a term which,as used herein, refers to liposomes comprising one or more specializedlipids that, when incorporated into liposomes, result in enhancedcirculation lifetimes relative to liposomes lacking such specializedlipids. Examples of sterically stabilized liposomes are those in whichpart of the vesicle-forming lipid portion of the liposome (A) comprisesone or more glycolipids, such as monosialoganglioside G_(M1), or (B) isderivatized with one or more hydrophilic polymers, such as apolyethylene glycol (PEG) moiety. While not wishing to be bound by anyparticular theory, it is thought in the art that, at least forsterically stabilized liposomes containing gangliosides, sphingomyelin,or PEG-derivatized lipids, the enhanced circulation half-life of thesesterically stabilized liposomes derives from a reduced uptake into cellsof the reticuloendothelial system (RES) (Allen et al., FEBS Letters,1987, 223, 42; Wu et al., Cancer Research, 1993, 53, 3765).

Various liposomes comprising one or more glycolipids are known in theart. Papahadjopoulos et al. (Ann. N.Y. Acad. Sci., 1987, 507, 64)reported the ability of monosialoganglioside G_(M1), galactocerebrosidesulfate and phosphatidylinositol to improve blood half-lives ofliposomes. These findings were expounded upon by Gabizon et al. (Proc.Natl. Acad. Sci. U.S.A., 1988, 85, 6949). U.S. Pat. No. 4,837,028 and WO88/04924, both to Allen et al., disclose liposomes comprising (1)sphingomyelin and (2) the ganglioside G_(M1) or a galactocerebrosidesulfate ester. U.S. Pat. No. 5,543,152 (Webb et al.) discloses liposomescomprising sphingomyelin. Liposomes comprising1,2-sn-dimyristoylphosphatidylcholine are disclosed in WO 97/13499 (Limet al).

In one embodiment, cationic liposomes are used. Cationic liposomespossess the advantage of being able to fuse to the cell membrane.Non-cationic liposomes, although not able to fuse as efficiently withthe plasma membrane, are taken up by macrophages in vivo and can be usedto deliver iRNA agents to macrophages.

Further advantages of liposomes include: liposomes obtained from naturalphospholipids are biocompatible and biodegradable; liposomes canincorporate a wide range of water and lipid soluble drugs; liposomes canprotect encapsulated iRNA agents in their internal compartments frommetabolism and degradation (Rosoff, in “Pharmaceutical Dosage Forms,”Lieberman, Rieger and Banker (Eds.), 1988, volume 1, p. 245). Importantconsiderations in the preparation of liposome formulations are the lipidsurface charge, vesicle size and the aqueous volume of the liposomes.

A positively charged synthetic cationic lipid,N-[1-(2,3-dioleyloxy)propyl]-N,N,N-trimethylammonium chloride (DOTMA)can be used to form small liposomes that interact spontaneously withnucleic acid to form lipid-nucleic acid complexes which are capable offusing with the negatively charged lipids of the cell membranes oftissue culture cells, resulting in delivery of iRNA agent (see, e.g.,Felgner, P. L. et al., Proc. Natl. Acad. Sci., USA 8:7413-7417, 1987 andU.S. Pat. No. 4,897,355 for a description of DOTMA and its use withDNA).

A DOTMA analogue, 1,2-bis(oleoyloxy)-3-(trimethylammonia)propane (DOTAP)can be used in combination with a phospholipid to form DNA-complexingvesicles. Lipofectin™ Bethesda Research Laboratories, Gaithersburg, Md.)is an effective agent for the delivery of highly anionic nucleic acidsinto living tissue culture cells that comprise positively charged DOTMAliposomes which interact spontaneously with negatively chargedpolynucleotides to form complexes. When enough positively chargedliposomes are used, the net charge on the resulting complexes is alsopositive. Positively charged complexes prepared in this wayspontaneously attach to negatively charged cell surfaces, fuse with theplasma membrane, and efficiently deliver functional nucleic acids into,for example, tissue culture cells. Another commercially availablecationic lipid, 1,2-bis(oleoyloxy)-3,3-(trimethylammonia)propane(“DOTAP”) (Boehringer Mannheim, Indianapolis, Ind.) differs from DOTMAin that the oleoyl moieties are linked by ester, rather than etherlinkages.

Other reported cationic lipid compounds include those that have beenconjugated to a variety of moieties including, for example,carboxyspermine which has been conjugated to one of two types of lipidsand includes compounds such as 5-carboxyspermylglycine dioctaoleoylamide(“DOGS”) (Transfectam™, Promega, Madison, Wis.) anddipalmitoylphosphatidylethanolamine 5-carboxyspermyl-amide (“DPPES”)(see, e.g., U.S. Pat. No. 5,171,678).

Another cationic lipid conjugate includes derivatization of the lipidwith cholesterol (“DC-Chol”) which has been formulated into liposomes incombination with DOPE (See, Gao, X. and Huang, L., Biochim. Biophys.Res. Commun. 179:280, 1991). Lipopolylysine, made by conjugatingpolylysine to DOPE, has been reported to be effective for transfectionin the presence of serum (Zhou, X. et al., Biochim. Biophys. Acta1065:8, 1991). For certain cell lines, these liposomes containingconjugated cationic lipids, are said to exhibit lower toxicity andprovide more efficient transfection than the DOTMA-containingcompositions. Other commercially available cationic lipid productsinclude DMRIE and DMRIE-HP (Vical, La Jolla, Calif.) and Lipofectamine(DOSPA) (Life Technology, Inc., Gaithersburg, Md.). Other cationiclipids suitable for the delivery of oligonucleotides are described in WO98/39359 and WO 96/37194.

Liposomal formulations are particularly suited for topicaladministration, liposomes present several advantages over otherformulations. Such advantages include reduced side effects related tohigh systemic absorption of the administered drug, increasedaccumulation of the administered drug at the desired target, and theability to administer iRNA agent into the skin. In some implementations,liposomes are used for delivering iRNA agent to epidermal cells and alsoto enhance the penetration of iRNA agent into dermal tissues, e.g., intoskin. For example, the liposomes can be applied topically. Topicaldelivery of drugs formulated as liposomes to the skin has beendocumented (see, e.g., Weiner et al., Journal of Drug Targeting, 1992,vol. 2,405-410 and du Plessis et al., Antiviral Research, 18, 1992,259-265; Mannino, R. J. and Fould-Fogerite, S., Biotechniques 6:682-690,1988; Itani, T. et al. Gene 56:267-276. 1987; Nicolau, C. et al. Meth.Enz. 149:157-176, 1987; Straubinger, R. M. and Papahadjopoulos, D. Meth.Enz. 101:512-527, 1983; Wang, C. Y. and Huang, L., Proc. Natl. Acad.Sci. USA 84:7851-7855, 1987).

Non-ionic liposomal systems have also been examined to determine theirutility in the delivery of drugs to the skin, in particular systemscomprising non-ionic surfactant and cholesterol. Non-ionic liposomalformulations comprising Novasome I (glyceryldilaurate/cholesterol/polyoxyethylene-10-stearyl ether) and Novasome II(glyceryl distearate/cholesterol/polyoxyethylene-10-stearyl ether) wereused to deliver a drug into the dermis of mouse skin. Such formulationswith iRNA agent are useful for treating a dermatological disorder.

Liposomes that include iRNA can be made highly deformable. Suchdeformability can enable the liposomes to penetrate through pore thatare smaller than the average radius of the liposome. For example,transfersomes are a type of deformable liposomes. Transferosomes can bemade by adding surface edge activators, usually surfactants, to astandard liposomal composition. Transfersomes that include iRNA agentcan be delivered, for example, subcutaneously by infection in order todeliver iRNA agent to keratinocytes in the skin. In order to crossintact mammalian skin, lipid vesicles must pass through a series of finepores, each with a diameter less than 50 nm, under the influence of asuitable transdermal gradient. In addition, due to the lipid properties,these transferosomes can be self-optimizing (adaptive to the shape ofpores, e.g., in the skin), self-repairing, and can frequently reachtheir targets without fragmenting, and often self-loading.

Other formulations amenable to the present invention are described inU.S. provisional application Ser. No. 61/018,616, filed Jan. 2, 2008;61/018,611, filed Jan. 2, 2008; 61/039,748, filed Mar. 26, 2008;61/047,087, filed Apr. 22, 2008 and 61/051,528, filed May 8, 2008. PCTapplication no PCT/US2007/080331, filed Oct. 3, 2007 also describesformulations that are amenable to the present invention.

Transfersomes are yet another type of liposomes, and are highlydeformable lipid aggregates which are attractive candidates for drugdelivery vehicles. Transfersomes can be described as lipid dropletswhich are so highly deformable that they are easily able to penetratethrough pores which are smaller than the droplet. Transfersomes areadaptable to the environment in which they are used, e.g., they areself-optimizing (adaptive to the shape of pores in the skin),self-repairing, frequently reach their targets without fragmenting, andoften self-loading. To make transfersomes it is possible to add surfaceedge-activators, usually surfactants, to a standard liposomalcomposition. Transfersomes have been used to deliver serum albumin tothe skin. The transfersome-mediated delivery of serum albumin has beenshown to be as effective as subcutaneous injection of a solutioncontaining serum albumin.

Surfactants find wide application in formulations such as emulsions(including microemulsions) and liposomes. The most common way ofclassifying and ranking the properties of the many different types ofsurfactants, both natural and synthetic, is by the use of thehydrophile/lipophile balance (HLB). The nature of the hydrophilic group(also known as the “head”) provides the most useful means forcategorizing the different surfactants used in formulations (Rieger, in“Pharmaceutical Dosage Forms”, Marcel Dekker, Inc., New York, N.Y.,1988, p. 285).

If the surfactant molecule is not ionized, it is classified as anonionic surfactant. Nonionic surfactants find wide application inpharmaceutical and cosmetic products and are usable over a wide range ofpH values. In general their HLB values range from 2 to about 18depending on their structure. Nonionic surfactants include nonionicesters such as ethylene glycol esters, propylene glycol esters, glycerylesters, polyglyceryl esters, sorbitan esters, sucrose esters, andethoxylated esters. Nonionic alkanolamides and ethers such as fattyalcohol ethoxylates, propoxylated alcohols, and ethoxylated/propoxylatedblock polymers are also included in this class. The polyoxyethylenesurfactants are the most popular members of the nonionic surfactantclass.

If the surfactant molecule carries a negative charge when it isdissolved or dispersed in water, the surfactant is classified asanionic. Anionic surfactants include carboxylates such as soaps, acyllactylates, acyl amides of amino acids, esters of sulfuric acid such asalkyl sulfates and ethoxylated alkyl sulfates, sulfonates such as alkylbenzene sulfonates, acyl isethionates, acyl taurates andsulfosuccinates, and phosphates. The most important members of theanionic surfactant class are the alkyl sulfates and the soaps.

If the surfactant molecule carries a positive charge when it isdissolved or dispersed in water, the surfactant is classified ascationic. Cationic surfactants include quaternary ammonium salts andethoxylated amines. The quaternary ammonium salts are the most usedmembers of this class.

If the surfactant molecule has the ability to carry either a positive ornegative charge, the surfactant is classified as amphoteric. Amphotericsurfactants include acrylic acid derivatives, substituted alkylamides,N-alkylbetaines and phosphatides.

The use of surfactants in drug products, formulations and in emulsionshas been reviewed (Rieger, in “Pharmaceutical Dosage Forms”, MarcelDekker, Inc., New York, N.Y., 1988, p. 285).

The iRNA for use in the methods of the invention can also be provided asmicellar formulations. “Micelles” are defined herein as a particulartype of molecular assembly in which amphipathic molecules are arrangedin a spherical structure such that all the hydrophobic portions of themolecules are directed inward, leaving the hydrophilic portions incontact with the surrounding aqueous phase. The converse arrangementexists if the environment is hydrophobic.

A mixed micellar formulation suitable for delivery through transdermalmembranes may be prepared by mixing an aqueous solution of the siRNAcomposition, an alkali metal C₈ to C₂₂ alkyl sulphate, and a micelleforming compounds. Exemplary micelle forming compounds include lecithin,hyaluronic acid, pharmaceutically acceptable salts of hyaluronic acid,glycolic acid, lactic acid, chamomile extract, cucumber extract, oleicacid, linoleic acid, linolenic acid, monoolein, monooleates,monolaurates, borage oil, evening of primrose oil, menthol, trihydroxyoxo cholanyl glycine and pharmaceutically acceptable salts thereof,glycerin, polyglycerin, lysine, polylysine, triolein, polyoxyethyleneethers and analogues thereof, polidocanol alkyl ethers and analoguesthereof, chenodeoxycholate, deoxycholate, and mixtures thereof. Themicelle forming compounds may be added at the same time or afteraddition of the alkali metal alkyl sulphate. Mixed micelles will formwith substantially any kind of mixing of the ingredients but vigorousmixing in order to provide smaller size micelles.

In one method a first micellar composition is prepared which containsthe siRNA composition and at least the alkali metal alkyl sulphate. Thefirst micellar composition is then mixed with at least three micelleforming compounds to form a mixed micellar composition. In anothermethod, the micellar composition is prepared by mixing the siRNAcomposition, the alkali metal alkyl sulphate and at least one of themicelle forming compounds, followed by addition of the remaining micelleforming compounds, with vigorous mixing.

Phenol and/or m-cresol may be added to the mixed micellar composition tostabilize the formulation and protect against bacterial growth.Alternatively, phenol and/or m-cresol may be added with the micelleforming ingredients. An isotonic agent such as glycerin may also beadded after formation of the mixed micellar composition.

For delivery of the micellar formulation as a spray, the formulation canbe put into an aerosol dispenser and the dispenser is charged with apropellant. The propellant, which is under pressure, is in liquid formin the dispenser. The ratios of the ingredients are adjusted so that theaqueous and propellant phases become one, i.e., there is one phase. Ifthere are two phases, it is necessary to shake the dispenser prior todispensing a portion of the contents, e.g., through a metered valve. Thedispensed dose of pharmaceutical agent is propelled from the meteredvalve in a fine spray.

Propellants may include hydrogen-containing chlorofluorocarbons,hydrogen-containing fluorocarbons, dimethyl ether and diethyl ether. Incertain embodiments, HFA 134a (1,1,1,2 tetrafluoroethane) may be used.

The specific concentrations of the essential ingredients can bedetermined by relatively straightforward experimentation. For absorptionthrough the oral cavities, it is often desirable to increase, e.g., atleast double or triple, the dosage for through injection oradministration through the gastrointestinal tract.

B. Lipid Particles

iRNAs, e.g., dsRNAs, of in the invention may be fully encapsulated in alipid formulation, e.g., a LNP, or other nucleic acid-lipid particle.The term “lipid nanoparticle” or “LNP” is a vesicle comprising a lipidlayer encapsulating a pharmaceutically active molecule, such as anucleic acid molecule, e.g., an iRNA or a plasmid from which an iRNA istranscribed. LNPs are described in, for example, U.S. Pat. Nos.6,858,225, 6,815,432, 8,158,601, and 8,058,069, the entire contents ofwhich are hereby incorporated herein by reference.

LNPs typically contain a cationic lipid, a non-cationic lipid, and alipid that prevents aggregation of the particle (e.g., a PEG-lipidconjugate). LNPs are extremely useful for systemic applications, as theyexhibit extended circulation lifetimes following intravenous (i.v.)injection and accumulate at distal sites (e.g., sites physicallyseparated from the administration site). LNPs include “pSPLP,” whichinclude an encapsulated condensing agent-nucleic acid complex as setforth in PCT Publication No. WO 00/03683. The particles of the presentinvention typically have a mean diameter of about 50 nm to about 150 nm,more typically about 60 nm to about 130 nm, more typically about 70 nmto about 110 nm, most typically about 70 nm to about 90 nm, and aresubstantially nontoxic. In addition, the nucleic acids when present inthe nucleic acid-lipid particles of the present invention are resistantin aqueous solution to degradation with a nuclease. Nucleic acid-lipidparticles and their method of preparation are disclosed in, e.g., U.S.Pat. Nos. 5,976,567; 5,981,501; 6,534,484; 6,586,410; 6,815,432; U.S.Publication No. 2010/0324120 and PCT Publication No. WO 96/40964.

In one embodiment, the lipid to drug ratio (mass/mass ratio) (e.g.,lipid to dsRNA ratio) will be in the range of from about 1:1 to about50:1, from about 1:1 to about 25:1, from about 3:1 to about 15:1, fromabout 4:1 to about 10:1, from about 5:1 to about 9:1, or about 6:1 toabout 9:1. Ranges intermediate to the above recited ranges are alsocontemplated to be part of the invention.

The cationic lipid can be, for example, N,N-dioleyl-N,N-dimethylammoniumchloride (DODAC), N,N-distearyl-N,N-dimethylammonium bromide (DDAB),N—(I-(2,3-dioleoyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTAP),N—(I-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTMA),N,N-dimethyl-2,3-dioleyloxy)propylamine (DODMA),1,2-DiLinoleyloxy-N,N-dimethylaminopropane (DLinDMA),1,2-Dilinolenyloxy-N,N-dimethylaminopropane (DLenDMA),1,2-Dilinoleylcarbamoyloxy-3-dimethylaminopropane (DLin-C-DAP),1,2-Dilinoleyoxy-3-(dimethylamino)acetoxypropane (DLin-DAC),1,2-Dilinoleyoxy-3-morpholinopropane (DLin-MA),1,2-Dilinoleoyl-3-dimethylaminopropane (DLinDAP),1,2-Dilinoleylthio-3-dimethylaminopropane (DLin-S-DMA),1-Linoleoyl-2-linoleyloxy-3-dimethylaminopropane (DLin-2-DMAP),1,2-Dilinoleyloxy-3-trimethylaminopropane chloride salt (DLin-TMA.Cl),1,2-Dilinoleoyl-3-trimethylaminopropane chloride salt (DLin-TAP.Cl),1,2-Dilinoleyloxy-3-(N-methylpiperazino)propane (DLin-MPZ), or3-(N,N-Dilinoleylamino)-1,2-propanediol (DLinAP),3-(N,N-Dioleylamino)-1,2-propanedio (DOAP),1,2-Dilinoleyloxo-3-(2-N,N-dimethylamino)ethoxypropane (DLin-EG-DMA),1,2-Dilinolenyloxy-N,N-dimethylaminopropane (DLinDMA),2,2-Dilinoleyl-4-dimethylaminomethyl-[1,3]-dioxolane (DLin-K-DMA) oranalogs thereof,(3aR,5s,6aS)-N,N-dimethyl-2,2-di((9Z,12Z)-octadeca-9,12-dienyl)tetrahydro-3aH-cyclopenta[d][1,3]dioxol-5-amine(ALN100), (6Z,9Z,28Z,31Z)-heptatriaconta-6,9,28,31-tetraen-19-yl4-(dimethylamino)butanoate (MC3),1,1′-(2-(4-(2-((2-(bis(2-hydroxydodecyl)amino)ethyl)(2-hydroxydodecyl)amino)ethyl)piperazin-1-yl)ethylazanediyl)didodecan-2-ol(Tech G1), or a mixture thereof. The cationic lipid can comprise fromabout 20 mol % to about 50 mol % or about 40 mol % of the total lipidpresent in the particle.

In another embodiment, the compound2,2-Dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane can be used toprepare lipid-siRNA nanoparticles. Synthesis of2,2-Dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane is described in U.S.provisional patent application No. 61/107,998 filed on Oct. 23, 2008,which is herein incorporated by reference.

In one embodiment, the lipid-siRNA particle includes 40% 2,2-Dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane: 10% DSPC: 40%Cholesterol: 10% PEG-C-DOMG (mole percent) with a particle size of63.0±20 nm and a 0.027 siRNA/Lipid Ratio.

The ionizable/non-cationic lipid can be an anionic lipid or a neutrallipid including, but not limited to, distearoylphosphatidylcholine(DSPC), dioleoylphosphatidylcholine (DOPC),dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylglycerol(DOPG), dipalmitoylphosphatidylglycerol (DPPG),dioleoyl-phosphatidylethanolamine (DOPE),palmitoyloleoylphosphatidylcholine (POPC),palmitoyloleoylphosphatidylethanolamine (POPE),dioleoyl-phosphatidylethanolamine4-(N-maleimidomethyl)-cyclohexane-1-carboxylate (DOPE-mal), dipalmitoylphosphatidyl ethanolamine (DPPE), dimyristoylphosphoethanolamine (DMPE),distearoyl-phosphatidyl-ethanolamine (DSPE), 16-O-monomethyl PE,16-O-dimethyl PE, 18-1-trans PE,1-stearoyl-2-oleoyl-phosphatidyethanolamine (SOPE), cholesterol, or amixture thereof. The non-cationic lipid can be from about 5 mol % toabout 90 mol %, about 10 mol %, or about 58 mol % if cholesterol isincluded, of the total lipid present in the particle.

The conjugated lipid that inhibits aggregation of particles can be, forexample, a polyethyleneglycol (PEG)-lipid including, without limitation,a PEG-diacylglycerol (DAG), a PEG-dialkyloxypropyl (DAA), aPEG-phospholipid, a PEG-ceramide (Cer), or a mixture thereof. ThePEG-DAA conjugate can be, for example, a PEG-dilauryloxypropyl (Ci₂), aPEG-dimyristyloxypropyl (Ci₄), a PEG-dipalmityloxypropyl (Ci₆), or aPEG-distearyloxypropyl (C]₈). The conjugated lipid that preventsaggregation of particles can be from 0 mol % to about 20 mol % or about2 mol % of the total lipid present in the particle.

In some embodiments, the nucleic acid-lipid particle further includescholesterol at, e.g., about 10 mol % to about 60 mol % or about 48 mol %of the total lipid present in the particle.

In one embodiment, the lipidoid ND98.4HCl (MW 1487) (see U.S. patentapplication Ser. No. 12/056,230, filed Mar. 26, 2008, which isincorporated herein by reference), Cholesterol (Sigma-Aldrich), andPEG-Ceramide C16 (Avanti Polar Lipids) can be used to preparelipid-dsRNA nanoparticles (i.e., LNP01 particles). Stock solutions ofeach in ethanol can be prepared as follows: ND98, 133 mg/ml;Cholesterol, 25 mg/ml, PEG-Ceramide C16, 100 mg/ml. The ND98,Cholesterol, and PEG-Ceramide C16 stock solutions can then be combinedin a, e.g., 42:48:10 molar ratio. The combined lipid solution can bemixed with aqueous dsRNA (e.g., in sodium acetate pH 5) such that thefinal ethanol concentration is about 35-45% and the final sodium acetateconcentration is about 100-300 mM. Lipid-dsRNA nanoparticles typicallyform spontaneously upon mixing. Depending on the desired particle sizedistribution, the resultant nanoparticle mixture can be extruded througha polycarbonate membrane (e.g., 100 nm cut-off) using, for example, athermobarrel extruder, such as Lipex Extruder (Northern Lipids, Inc). Insome cases, the extrusion step can be omitted. Ethanol removal andsimultaneous buffer exchange can be accomplished by, for example,dialysis or tangential flow filtration. Buffer can be exchanged with,for example, phosphate buffered saline (PBS) at about pH 7, e.g., aboutpH 6.9, about pH 7.0, about pH 7.1, about pH 7.2, about pH 7.3, or aboutpH 7.4.

LNP01 formulations are described, e.g., in International ApplicationPublication No. WO 2008/042973, which is hereby incorporated byreference.

Additional exemplary lipid-dsRNA formulations are described in Table 1.

TABLE 1 cationic lipid/non-cationic lipid/cholesterol/PEG-lipidconjugate Ionizable/Cationic Lipid Lipid:siRNA ratio SNALP-11,2-Dilinolenyloxy-N,N- DLinDMA/DPPC/Cholesterol/PEG-dimethylaminopropane (DLinDMA) cDMA (57.1/7.1/34.4/1.4) lipid:siRNA ~7:12-XTC 2,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DPPC/Cholesterol/PEG-cDMA[1,3]-dioxolane (XTC) 57.1/7.1/34.4/1.4 lipid:siRNA ~7:1 LNP052,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DSPC/Cholesterol/PEG-DMG[1,3]-dioxolane (XTC) 57.5/7.5/31.5/3.5 lipid:siRNA ~6:1 LNP062,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DSPC/Cholesterol/PEG-DMG[1,3]-dioxolane (XTC) 57.5/7.5/31.5/3.5 lipid:siRNA ~11:1 LNP072,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DSPC/Cholesterol/PEG-DMG[1,3]-dioxolane (XTC) 60/7.5/31/1.5, lipid:siRNA ~6:1 LNP082,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DSPC/Cholesterol/PEG-DMG[1,3]-dioxolane (XTC) 60/7.5/31/1.5, lipid:siRNA ~11:1 LNP092,2-Dilinoleyl-4-dimethylaminoethyl- XTC/DSPC/Cholesterol/PEG-DMG[1,3]-dioxolane (XTC) 50/10/38.5/1.5 Lipid:siRNA 10:1 LNP10(3aR,5s,6aS)-N,N-dimethyl-2,2- ALN100/DSPC/Cholesterol/PEG-DMGdi(9Z,12Z)-octadeca-9,12- 50/10/38.5/1.5 dienyl)tetrahydro-3aH-Lipid:siRNA 10:1 cyclopenta[d][1,3]dioxol-5-amine (ALN100) LNP11(6Z,9Z,28Z,31Z)-heptatriaconta- MC-3/DSPC/Cholesterol/PEG-DMG6,9,28,31-tetraen-19-yl 4- 50/10/38.5/1.5 (dimethylamino)butanoate (MC3)Lipid:siRNA 10:1 LNP12 1,1′-(2-(4-(2-((2-(bis(2- TechG1/DSPC/Cholesterol/PEG-DMG hydroxydodecyl)amino)ethyl)(2-50/10/38.5/1.5 hydroxydodecyl)amino)ethyl)piperazin- Lipid:siRNA 10:11-yl)ethylazanediyl)didodecan-2-ol (Tech G1) LNP13 XTCXTC/DSPC/Chol/PEG-DMG 50/10/38.5/1.5 Lipid:siRNA: 33:1 LNP14 MC3MC3/DSPC/Chol/PEG-DMG 40/15/40/5 Lipid:siRNA: 11:1 LNP15 MC3MC3/DSPC/Chol/PEG-DSG/GalNAc- PEG-DSG 50/10/35/4.5/0.5 Lipid:siRNA: 11:1LNP16 MC3 MC3/DSPC/Chol/PEG-DMG 50/10/38.5/1.5 Lipid:siRNA: 7:1 LNP17MC3 MC3/DSPC/Chol/PEG-DSG 50/10/38.5/1.5 Lipid:siRNA: 10:1 LNP18 MC3MC3/DSPC/Chol/PEG-DMG 50/10/38.5/1.5 Lipid:siRNA: 12:1 LNP19 MC3MC3/DSPC/Chol/PEG-DMG 50/10/35/5 Lipid:siRNA: 8:1 LNP20 MC3MC3/DSPC/Chol/PEG-DPG 50/10/38.5/1.5 Lipid:siRNA: 10:1 LNP21 C12-200C12-200/DSPC/Chol/PEG-DSG 50/10/38.5/1.5 Lipid:siRNA: 7:1 LNP22 XTCXTC/DSPC/Chol/PEG-DSG 50/10/38.5/1.5 Lipid:siRNA: 10:1 DSPC:distearoylphosphatidylcholine DPPC: dipalmitoylphosphatidylcholinePEG-DMG: PEG-didimyristoyl glycerol (C14-PEG, or PEG-C14) (PEG with avgmol wt of 2000) PEG-DSG: PEG-distyryl glycerol (C18-PEG, or PEG-C18)(PEG with avg mol wt of 2000) PEG-cDMA:PEG-carbamoyl-1,2-dimyristyloxypropylamine (PEG with avg mol wt of 2000)SNALP (1,2-Dilinolenyloxy-N,N-dimethylaminopropane (DLinDMA)) comprisingformulations are described in International Publication No.WO2009/127060, filed Apr. 15, 2009, which is hereby incorporated byreference. XTC comprising formulations are described, e.g., in U.S.Provisional Serial No. 61/148,366, filed Jan. 29, 2009; U.S. ProvisionalSerial No. 61/156,851, filed Mar. 2, 2009; U.S. Provisional Serial No.filed Jun. 10, 2009; U.S. Provisional Serial No. 61/228,373, filed Jul.24, 2009; U.S. Provisional Serial No. 61/239,686, filed Sep. 3, 2009,and International Application No. PCT/US2010/022614, filed Jan. 29,2010, which are hereby incorporated by reference. MC3 comprisingformulations are described, e.g., in U.S. Publication No. 2010/0324120,filed Jun. 10, 2010, the entire contents of which are herebyincorporated by reference. ALNY-100 comprising formulations aredescribed e.g., International patent application number PCT/US09/63933,filed on Nov. 10, 2009, which is hereby incorporated by reference.C12-200 comprising formulations are described in U.S. Provisional SerialNo. 61/175,770, filed May 5, 2009 and International Application No.PCT/US10/33777, filed May 5, 2010, which are hereby incorporated byreference.

Compositions and formulations for oral administration include powders orgranules, microparticulates, nanoparticulates, suspensions or solutionsin water or non-aqueous media, capsules, gel capsules, sachets, tabletsor minitablets. Thickeners, flavoring agents, diluents, emulsifiers,dispersing aids or binders can be desirable. In some embodiments, oralformulations are those in which dsRNAs featured in the invention areadministered in conjunction with one or more penetration enhancersurfactants and chelators. Suitable surfactants include fatty acidsand/or esters or salts thereof, bile acids and/or salts thereof.Suitable bile acids/salts include chenodeoxycholic acid (CDCA) andursodeoxychenodeoxycholic acid (UDCA), cholic acid, dehydrocholic acid,deoxycholic acid, glucholic acid, glycholic acid, glycodeoxycholic acid,taurocholic acid, taurodeoxycholic acid, sodiumtauro-24,25-dihydro-fusidate and sodium glycodihydrofusidate. Suitablefatty acids include arachidonic acid, undecanoic acid, oleic acid,lauric acid, caprylic acid, capric acid, myristic acid, palmitic acid,stearic acid, linoleic acid, linolenic acid, dicaprate, tricaprate,monoolein, dilaurin, glyceryl 1-monocaprate,1-dodecylazacycloheptan-2-one, an acylcarnitine, an acylcholine, or amonoglyceride, a diglyceride or a pharmaceutically acceptable saltthereof (e.g., sodium). In some embodiments, combinations of penetrationenhancers are used, for example, fatty acids/salts in combination withbile acids/salts. One exemplary combination is the sodium salt of lauricacid, capric acid and UDCA. Further penetration enhancers includepolyoxyethylene-9-lauryl ether, polyoxyethylene-20-cetyl ether. DsRNAsfeatured in the invention can be delivered orally, in granular formincluding sprayed dried particles, or complexed to form micro ornanoparticles. DsRNA complexing agents include poly-amino acids;polyimines; polyacrylates; polyalkylacrylates, polyoxethanes,polyalkylcyanoacrylates; cationized gelatins, albumins, starches,acrylates, polyethyleneglycols (PEG) and starches;polyalkylcyanoacrylates; DEAE-derivatized polyimines, pollulans,celluloses and starches. Suitable complexing agents include chitosan,N-trimethylchitosan, poly-L-lysine, polyhistidine, polyornithine,polyspermines, protamine, polyvinylpyridine,polythiodiethylaminomethylethylene P(TDAE), polyaminostyrene (e.g.,p-amino), poly(methylcyanoacrylate), poly(ethylcyanoacrylate),poly(butylcyanoacrylate), poly(isobutylcyanoacrylate),poly(isohexylcynaoacrylate), DEAE-methacrylate, DEAE-hexylacrylate,DEAE-acrylamide, DEAE-albumin and DEAE-dextran, polymethylacrylate,polyhexylacrylate, poly(D,L-lactic acid), poly(DL-lactic-co-glycolicacid (PLGA), alginate, and polyethyleneglycol (PEG). Oral formulationsfor dsRNAs and their preparation are described in detail in U.S. Pat.No. 6,887,906, US Publn. No. 20030027780, and U.S. Pat. No. 6,747,014,each of which is incorporated herein by reference.

Compositions and formulations for parenteral, intraparenchymal (into thebrain), intrathecal, intraventricular or intrahepatic administration caninclude sterile aqueous solutions which can also contain buffers,diluents and other suitable additives such as, but not limited to,penetration enhancers, carrier compounds and other pharmaceuticallyacceptable carriers or excipients.

Pharmaceutical compositions of the present invention include, but arenot limited to, solutions, emulsions, and liposome-containingformulations. These compositions can be generated from a variety ofcomponents that include, but are not limited to, preformed liquids,self-emulsifying solids and self-emulsifying semisolids. Particularlypreferred are formulations that target the liver when treating hepaticdisorders such as hepatic carcinoma.

The pharmaceutical formulations of the present invention, which canconveniently be presented in unit dosage form, can be prepared accordingto conventional techniques well known in the pharmaceutical industry.Such techniques include the step of bringing into association the activeingredients with the pharmaceutical carrier(s) or excipient(s). Ingeneral, the formulations are prepared by uniformly and intimatelybringing into association the active ingredients with liquid carriers orfinely divided solid carriers or both, and then, if necessary, shapingthe product.

The compositions of the present invention can be formulated into any ofmany possible dosage forms such as, but not limited to, tablets,capsules, gel capsules, liquid syrups, soft gels, suppositories, andenemas. The compositions of the present invention can also be formulatedas suspensions in aqueous, non-aqueous or mixed media. Aqueoussuspensions can further contain substances which increase the viscosityof the suspension including, for example, sodium carboxymethylcellulose,sorbitol and/or dextran. The suspension can also contain stabilizers.

C. Additional Formulations

i. Emulsions

The compositions of the present invention can be prepared and formulatedas emulsions. Emulsions are typically heterogeneous systems of oneliquid dispersed in another in the form of droplets usually exceeding0.1 μm in diameter (see e.g., Ansel's Pharmaceutical Dosage Forms andDrug Delivery Systems, Allen, L V., Popovich N G., and Ansel H C., 2004,Lippincott Williams & Wilkins (8th ed.), New York, N.Y.; Idson, inPharmaceutical Dosage Forms, Lieberman, Rieger and Banker (Eds.), 1988,Marcel Dekker, Inc., New York, N.Y., volume 1, p. 199; Rosoff, inPharmaceutical Dosage Forms, Lieberman, Rieger and Banker (Eds.), 1988,Marcel Dekker, Inc., New York, N.Y., Volume 1, p. 245; Block inPharmaceutical Dosage Forms, Lieberman, Rieger and Banker (Eds.), 1988,Marcel Dekker, Inc., New York, N.Y., volume 2, p. 335; Higuchi et al.,in Remington's Pharmaceutical Sciences, Mack Publishing Co., Easton,Pa., 1985, p. 301). Emulsions are often biphasic systems comprising twoimmiscible liquid phases intimately mixed and dispersed with each other.In general, emulsions can be of either the water-in-oil (w/o) or theoil-in-water (o/w) variety. When an aqueous phase is finely divided intoand dispersed as minute droplets into a bulk oily phase, the resultingcomposition is called a water-in-oil (w/o) emulsion. Alternatively, whenan oily phase is finely divided into and dispersed as minute dropletsinto a bulk aqueous phase, the resulting composition is called anoil-in-water (o/w) emulsion. Emulsions can contain additional componentsin addition to the dispersed phases, and the active drug which can bepresent as a solution in either the aqueous phase, oily phase or itselfas a separate phase. Pharmaceutical excipients such as emulsifiers,stabilizers, dyes, and antioxidants can also be present in emulsions asneeded. Pharmaceutical emulsions can also be multiple emulsions that arecomprised of more than two phases such as, for example, in the case ofoil-in-water-in-oil (o/w/o) and water-in-oil-in-water (w/o/w) emulsions.Such complex formulations often provide certain advantages that simplebinary emulsions do not. Multiple emulsions in which individual oildroplets of an o/w emulsion enclose small water droplets constitute aw/o/w emulsion. Likewise a system of oil droplets enclosed in globulesof water stabilized in an oily continuous phase provides an o/w/oemulsion.

Emulsions are characterized by little or no thermodynamic stability.Often, the dispersed or discontinuous phase of the emulsion is welldispersed into the external or continuous phase and maintained in thisform through the means of emulsifiers or the viscosity of theformulation. Either of the phases of the emulsion can be a semisolid ora solid, as is the case of emulsion-style ointment bases and creams.Other means of stabilizing emulsions entail the use of emulsifiers thatcan be incorporated into either phase of the emulsion. Emulsifiers canbroadly be classified into four categories: synthetic surfactants,naturally occurring emulsifiers, absorption bases, and finely dispersedsolids (see e.g., Ansel's Pharmaceutical Dosage Forms and Drug DeliverySystems, Allen, L V., Popovich N G., and Ansel H C., 2004, LippincottWilliams & Wilkins (8th ed.), New York, N.Y.; Idson, in PharmaceuticalDosage Forms, Lieberman, Rieger and Banker (Eds.), 1988, Marcel Dekker,Inc., New York, N.Y., volume 1, p. 199).

Synthetic surfactants, also known as surface active agents, have foundwide applicability in the formulation of emulsions and have beenreviewed in the literature (see e.g., Ansel's Pharmaceutical DosageForms and Drug Delivery Systems, Allen, L V., Popovich N G., and Ansel HC., 2004, Lippincott Williams & Wilkins (8th ed.), New York, N.Y.;Rieger, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), 1988, Marcel Dekker, Inc., New York, N.Y., volume 1, p. 285;Idson, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), Marcel Dekker, Inc., New York, N.Y., 1988, volume 1, p. 199).Surfactants are typically amphiphilic and comprise a hydrophilic and ahydrophobic portion. The ratio of the hydrophilic to the hydrophobicnature of the surfactant has been termed the hydrophile/lipophilebalance (HLB) and is a valuable tool in categorizing and selectingsurfactants in the preparation of formulations. Surfactants can beclassified into different classes based on the nature of the hydrophilicgroup: nonionic, anionic, cationic and amphoteric (see e.g., Ansel'sPharmaceutical Dosage Forms and Drug Delivery Systems, Allen, L V.,Popovich N G., and Ansel H C., 2004, Lippincott Williams & Wilkins (8thed.), New York, N.Y. Rieger, in Pharmaceutical Dosage Forms, Lieberman,Rieger and Banker (Eds.), 1988, Marcel Dekker, Inc., New York, N.Y.,volume 1, p. 285).

Naturally occurring emulsifiers used in emulsion formulations includelanolin, beeswax, phosphatides, lecithin and acacia. Absorption basespossess hydrophilic properties such that they can soak up water to formw/o emulsions yet retain their semisolid consistencies, such asanhydrous lanolin and hydrophilic petrolatum. Finely divided solids havealso been used as good emulsifiers especially in combination withsurfactants and in viscous preparations. These include polar inorganicsolids, such as heavy metal hydroxides, nonswelling clays such asbentonite, attapulgite, hectorite, kaolin, montmorillonite, colloidalaluminum silicate and colloidal magnesium aluminum silicate, pigmentsand nonpolar solids such as carbon or glyceryl tristearate.

A large variety of non-emulsifying materials are also included inemulsion formulations and contribute to the properties of emulsions.These include fats, oils, waxes, fatty acids, fatty alcohols, fattyesters, humectants, hydrophilic colloids, preservatives and antioxidants(Block, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), 1988, Marcel Dekker, Inc., New York, N.Y., volume 1, p. 335;Idson, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), 1988, Marcel Dekker, Inc., New York, N.Y., volume 1, p. 199).

Hydrophilic colloids or hydrocolloids include naturally occurring gumsand synthetic polymers such as polysaccharides (for example, acacia,agar, alginic acid, carrageenan, guar gum, karaya gum, and tragacanth),cellulose derivatives (for example, carboxymethylcellulose andcarboxypropylcellulose), and synthetic polymers (for example, carbomers,cellulose ethers, and carboxyvinyl polymers). These disperse or swell inwater to form colloidal solutions that stabilize emulsions by formingstrong interfacial films around the dispersed-phase droplets and byincreasing the viscosity of the external phase.

Since emulsions often contain a number of ingredients such ascarbohydrates, proteins, sterols and phosphatides that can readilysupport the growth of microbes, these formulations often incorporatepreservatives. Commonly used preservatives included in emulsionformulations include methyl paraben, propyl paraben, quaternary ammoniumsalts, benzalkonium chloride, esters of p-hydroxybenzoic acid, and boricacid. Antioxidants are also commonly added to emulsion formulations toprevent deterioration of the formulation. Antioxidants used can be freeradical scavengers such as tocopherols, alkyl gallates, butylatedhydroxyanisole, butylated hydroxytoluene, or reducing agents such asascorbic acid and sodium metabisulfite, and antioxidant synergists suchas citric acid, tartaric acid, and lecithin.

The application of emulsion formulations via dermatological, oral andparenteral routes and methods for their manufacture have been reviewedin the literature (see e.g., Ansel's Pharmaceutical Dosage Forms andDrug Delivery Systems, Allen, L V., Popovich N G., and Ansel H C., 2004,Lippincott Williams & Wilkins (8th ed.), New York, N.Y.; Idson, inPharmaceutical Dosage Forms, Lieberman, Rieger and Banker (Eds.), 1988,Marcel Dekker, Inc., New York, N.Y., volume 1, p. 199). Emulsionformulations for oral delivery have been very widely used because ofease of formulation, as well as efficacy from an absorption andbioavailability standpoint (see e.g., Ansel's Pharmaceutical DosageForms and Drug Delivery Systems, Allen, L V., Popovich N G., and Ansel HC., 2004, Lippincott Williams & Wilkins (8th ed.), New York, N.Y.;Rosoff, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), 1988, Marcel Dekker, Inc., New York, N.Y., volume 1, p. 245;Idson, in Pharmaceutical Dosage Forms, Lieberman, Rieger and Banker(Eds.), 1988, Marcel Dekker, Inc., New York, N.Y., volume 1, p. 199).Mineral-oil base laxatives, oil-soluble vitamins and high fat nutritivepreparations are among the materials that have commonly beenadministered orally as o/w emulsions.

ii. Microemulsions

In one embodiment of the present invention, the compositions of iRNAsand nucleic acids are formulated as microemulsions. A microemulsion canbe defined as a system of water, oil and amphiphile which is a singleoptically isotropic and thermodynamically stable liquid solution (seee.g., Ansel's Pharmaceutical Dosage Forms and Drug Delivery Systems,Allen, L V., Popovich N G., and Ansel H C., 2004, Lippincott Williams &Wilkins (8th ed.), New York, N.Y.; Rosoff, in Pharmaceutical DosageForms, Lieberman, Rieger and Banker (Eds.), 1988, Marcel Dekker, Inc.,New York, N.Y., volume 1, p. 245). Typically microemulsions are systemsthat are prepared by first dispersing an oil in an aqueous surfactantsolution and then adding a sufficient amount of a fourth component,generally an intermediate chain-length alcohol to form a transparentsystem. Therefore, microemulsions have also been described asthermodynamically stable, isotropically clear dispersions of twoimmiscible liquids that are stabilized by interfacial films ofsurface-active molecules (Leung and Shah, in: Controlled Release ofDrugs: Polymers and Aggregate Systems, Rosoff, M., Ed., 1989, VCHPublishers, New York, pages 185-215). Microemulsions commonly areprepared via a combination of three to five components that include oil,water, surfactant, cosurfactant and electrolyte. Whether themicroemulsion is of the water-in-oil (w/o) or an oil-in-water (o/w) typeis dependent on the properties of the oil and surfactant used and on thestructure and geometric packing of the polar heads and hydrocarbon tailsof the surfactant molecules (Schott, in Remington's PharmaceuticalSciences, Mack Publishing Co., Easton, Pa., 1985, p. 271).

The phenomenological approach utilizing phase diagrams has beenextensively studied and has yielded a comprehensive knowledge, to oneskilled in the art, of how to formulate microemulsions (see e.g.,Ansel's Pharmaceutical Dosage Forms and Drug Delivery Systems, Allen, LV., Popovich N G., and Ansel H C., 2004, Lippincott Williams & Wilkins(8th ed.), New York, N.Y.; Rosoff, in Pharmaceutical Dosage Forms,Lieberman, Rieger and Banker (Eds.), 1988, Marcel Dekker, Inc., NewYork, N.Y., volume 1, p. 245; Block, in Pharmaceutical Dosage Forms,Lieberman, Rieger and Banker (Eds.), 1988, Marcel Dekker, Inc., NewYork, N.Y., volume 1, p. 335). Compared to conventional emulsions,microemulsions offer the advantage of solubilizing water-insoluble drugsin a formulation of thermodynamically stable droplets that are formedspontaneously.

Surfactants used in the preparation of microemulsions include, but arenot limited to, ionic surfactants, non-ionic surfactants, Brij 96,polyoxyethylene oleyl ethers, polyglycerol fatty acid esters,tetraglycerol monolaurate (ML310), tetraglycerol monooleate (MO310),hexaglycerol monooleate (PO310), hexaglycerol pentaoleate (PO500),decaglycerol monocaprate (MCA750), decaglycerol monooleate (MO750),decaglycerol sequioleate (SO750), decaglycerol decaoleate (DAO750),alone or in combination with cosurfactants. The cosurfactant, usually ashort-chain alcohol such as ethanol, 1-propanol, and 1-butanol, servesto increase the interfacial fluidity by penetrating into the surfactantfilm and consequently creating a disordered film because of the voidspace generated among surfactant molecules. Microemulsions can, however,be prepared without the use of cosurfactants and alcohol-freeself-emulsifying microemulsion systems are known in the art. The aqueousphase can typically be, but is not limited to, water, an aqueoussolution of the drug, glycerol, PEG300, PEG400, polyglycerols, propyleneglycols, and derivatives of ethylene glycol. The oil phase can include,but is not limited to, materials such as Captex 300, Captex 355, CapmulMCM, fatty acid esters, medium chain (C8-C12) mono, di, andtri-glycerides, polyoxyethylated glyceryl fatty acid esters, fattyalcohols, polyglycolized glycerides, saturated polyglycolized C8-C10glycerides, vegetable oils and silicone oil.

Microemulsions are particularly of interest from the standpoint of drugsolubilization and the enhanced absorption of drugs. Lipid basedmicroemulsions (both o/w and w/o) have been proposed to enhance the oralbioavailability of drugs, including peptides (see e.g., U.S. Pat. Nos.6,191,105; 7,063,860; 7,070,802; 7,157,099; Constantinides et al.,Pharmaceutical Research, 1994, 11, 1385-1390; Ritschel, Meth. Find. Exp.Clin. Pharmacol., 1993, 13, 205). Microemulsions afford advantages ofimproved drug solubilization, protection of drug from enzymatichydrolysis, possible enhancement of drug absorption due tosurfactant-induced alterations in membrane fluidity and permeability,ease of preparation, ease of oral administration over solid dosageforms, improved clinical potency, and decreased toxicity (see e.g., U.S.Pat. Nos. 6,191,105; 7,063,860; 7,070,802; 7,157,099; Constantinides etal., Pharmaceutical Research, 1994, 11, 1385; Ho et al., J. Pharm. Sci.,1996, 85, 138-143). Often microemulsions can form spontaneously whentheir components are brought together at ambient temperature. This canbe particularly advantageous when formulating thermolabile drugs,peptides or iRNAs. Microemulsions have also been effective in thetransdermal delivery of active components in both cosmetic andpharmaceutical applications. It is expected that the microemulsioncompositions and formulations of the present invention will facilitatethe increased systemic absorption of iRNAs and nucleic acids from thegastrointestinal tract, as well as improve the local cellular uptake ofiRNAs and nucleic acids.

Microemulsions of the present invention can also contain additionalcomponents and additives such as sorbitan monostearate (Grill 3),Labrasol, and penetration enhancers to improve the properties of theformulation and to enhance the absorption of the iRNAs and nucleic acidsof the present invention. Penetration enhancers used in themicroemulsions of the present invention can be classified as belongingto one of five broad categories—surfactants, fatty acids, bile salts,chelating agents, and non-chelating non-surfactants (Lee et al.,Critical Reviews in Therapeutic Drug Carrier Systems, 1991, p. 92). Eachof these classes has been discussed above.

iii. Microparticles

An iRNA agent of the invention may be incorporated into a particle,e.g., a microparticle. Microparticles can be produced by spray-drying,but may also be produced by other methods including lyophilization,evaporation, fluid bed drying, vacuum drying, or a combination of thesetechniques.

iv. Penetration Enhancers

In one embodiment, the present invention employs various penetrationenhancers to effect the efficient delivery of nucleic acids,particularly iRNAs, to the skin of animals. Most drugs are present insolution in both ionized and nonionized forms. However, usually onlylipid soluble or lipophilic drugs readily cross cell membranes. It hasbeen discovered that even non-lipophilic drugs can cross cell membranesif the membrane to be crossed is treated with a penetration enhancer. Inaddition to aiding the diffusion of non-lipophilic drugs across cellmembranes, penetration enhancers also enhance the permeability oflipophilic drugs.

Penetration enhancers can be classified as belonging to one of fivebroad categories, i.e., surfactants, fatty acids, bile salts, chelatingagents, and non-chelating non-surfactants (see e.g., Malmsten, M.Surfactants and polymers in drug delivery, Informa Health Care, NewYork, N.Y., 2002; Lee et al., Critical Reviews in Therapeutic DrugCarrier Systems, 1991, p. 92). Each of the above mentioned classes ofpenetration enhancers are described below in greater detail.

Surfactants (or “surface-active agents”) are chemical entities which,when dissolved in an aqueous solution, reduce the surface tension of thesolution or the interfacial tension between the aqueous solution andanother liquid, with the result that absorption of iRNAs through themucosa is enhanced. In addition to bile salts and fatty acids, thesepenetration enhancers include, for example, sodium lauryl sulfate,polyoxyethylene-9-lauryl ether and polyoxyethylene-20-cetyl ether) (seee.g., Malmsten, M. Surfactants and polymers in drug delivery, InformaHealth Care, New York, N.Y., 2002; Lee et al., Critical Reviews inTherapeutic Drug Carrier Systems, 1991, p. 92); and perfluorochemicalemulsions, such as FC-43. Takahashi et al., J. Pharm. Pharmacol., 1988,40, 252).

Various fatty acids and their derivatives which act as penetrationenhancers include, for example, oleic acid, lauric acid, capric acid(n-decanoic acid), myristic acid, palmitic acid, stearic acid, linoleicacid, linolenic acid, dicaprate, tricaprate, monoolein(1-monooleoyl-rac-glycerol), dilaurin, caprylic acid, arachidonic acid,glycerol 1-monocaprate, 1-dodecylazacycloheptan-2-one, acylcarnitines,acylcholines, C1-20 alkyl esters thereof (e.g., methyl, isopropyl andt-butyl), and mono- and di-glycerides thereof (i.e., oleate, laurate,caprate, myristate, palmitate, stearate, linoleate, etc.) (see e.g.,Touitou, E., et al. Enhancement in Drug Delivery, CRC Press, Danvers,Mass., 2006; Lee et al., Critical Reviews in Therapeutic Drug CarrierSystems, 1991, p. 92; Muranishi, Critical Reviews in Therapeutic DrugCarrier Systems, 1990, 7, 1-33; El Hariri et al., J. Pharm. Pharmacol.,1992, 44, 651-654).

The physiological role of bile includes the facilitation of dispersionand absorption of lipids and fat-soluble vitamins (see e.g., Malmsten,M. Surfactants and polymers in drug delivery, Informa Health Care, NewYork, N.Y., 2002; Brunton, Chapter 38 in: Goodman & Gilman's ThePharmacological Basis of Therapeutics, 9th Ed., Hardman et al. Eds.,McGraw-Hill, New York, 1996, pp. 934-935). Various natural bile salts,and their synthetic derivatives, act as penetration enhancers. Thus theterm “bile salts” includes any of the naturally occurring components ofbile as well as any of their synthetic derivatives. Suitable bile saltsinclude, for example, cholic acid (or its pharmaceutically acceptablesodium salt, sodium cholate), dehydrocholic acid (sodiumdehydrocholate), deoxycholic acid (sodium deoxycholate), glucholic acid(sodium glucholate), glycholic acid (sodium glycocholate),glycodeoxycholic acid (sodium glycodeoxycholate), taurocholic acid(sodium taurocholate), taurodeoxycholic acid (sodium taurodeoxycholate),chenodeoxycholic acid (sodium chenodeoxycholate), ursodeoxycholic acid(UDCA), sodium tauro-24,25-dihydro-fusidate (STDHF), sodiumglycodihydrofusidate and polyoxyethylene-9-lauryl ether (POE) (see e.g.,Malmsten, M. Surfactants and polymers in drug delivery, Informa HealthCare, New York, N.Y., 2002; Lee et al., Critical Reviews in TherapeuticDrug Carrier Systems, 1991, page 92; Swinyard, Chapter 39 In:Remington's Pharmaceutical Sciences, 18th Ed., Gennaro, ed., MackPublishing Co., Easton, Pa., 1990, pages 782-783; Muranishi, CriticalReviews in Therapeutic Drug Carrier Systems, 1990, 7, 1-33; Yamamoto etal., J. Pharm. Exp. Ther., 1992, 263, 25; Yamashita et al., J. Pharm.Sci., 1990, 79, 579-583).

Chelating agents, as used in connection with the present invention, canbe defined as compounds that remove metallic ions from solution byforming complexes therewith, with the result that absorption of iRNAsthrough the mucosa is enhanced. With regards to their use as penetrationenhancers in the present invention, chelating agents have the addedadvantage of also serving as DNase inhibitors, as most characterized DNAnucleases require a divalent metal ion for catalysis and are thusinhibited by chelating agents (Jarrett, J. Chromatogr., 1993, 618,315-339). Suitable chelating agents include but are not limited todisodium ethylenediaminetetraacetate (EDTA), citric acid, salicylates(e.g., sodium salicylate, 5-methoxysalicylate and homovanilate), N-acylderivatives of collagen, laureth-9 and N-amino acyl derivatives ofbeta-diketones (enamines)(see e.g., Katdare, A. et al., Excipientdevelopment for pharmaceutical, biotechnology, and drug delivery, CRCPress, Danvers, Mass., 2006; Lee et al., Critical Reviews in TherapeuticDrug Carrier Systems, 1991, page 92; Muranishi, Critical Reviews inTherapeutic Drug Carrier Systems, 1990, 7, 1-33; Buur et al., J. ControlRel., 1990, 14, 43-51).

As used herein, non-chelating non-surfactant penetration enhancingcompounds can be defined as compounds that demonstrate insignificantactivity as chelating agents or as surfactants but that nonethelessenhance absorption of iRNAs through the alimentary mucosa (see e.g.,Muranishi, Critical Reviews in Therapeutic Drug Carrier Systems, 1990,7, 1-33). This class of penetration enhancers includes, for example,unsaturated cyclic ureas, 1-alkyl- and 1-alkenylazacyclo-alkanonederivatives (Lee et al., Critical Reviews in Therapeutic Drug CarrierSystems, 1991, page 92); and non-steroidal anti-inflammatory agents suchas diclofenac sodium, indomethacin and phenylbutazone (Yamashita et al.,J. Pharm. Pharmacol., 1987, 39, 621-626).

Agents that enhance uptake of iRNAs at the cellular level can also beadded to the pharmaceutical and other compositions of the presentinvention. For example, cationic lipids, such as lipofectin (Junichi etal, U.S. Pat. No. 5,705,188), cationic glycerol derivatives, andpolycationic molecules, such as polylysine (Lollo et al., PCTApplication WO 97/30731), are also known to enhance the cellular uptakeof dsRNAs. Examples of commercially available transfection reagentsinclude, for example Lipofectamine™ (Invitrogen; Carlsbad, Calif.),Lipofectamine 2000™ (Invitrogen; Carlsbad, Calif.), 293Fectin™(Invitrogen; Carlsbad, Calif.), Cellfectin™ (Invitrogen; Carlsbad,Calif.), DMRIE-C™ (Invitrogen; Carlsbad, Calif.), FreeStyle™ MAX(Invitrogen; Carlsbad, Calif.), Lipofectamine™ 2000 CD (Invitrogen;Carlsbad, Calif.), Lipofectamine™ (Invitrogen; Carlsbad, Calif.),iRNAMAX (Invitrogen; Carlsbad, Calif.), Oligofectamine™ (Invitrogen;Carlsbad, Calif.), Optifect™ (Invitrogen; Carlsbad, Calif.), X-tremeGENEQ2 Transfection Reagent (Roche; Grenzacherstrasse, Switzerland), DOTAPLiposomal Transfection Reagent (Grenzacherstrasse, Switzerland), DOSPERLiposomal Transfection Reagent (Grenzacherstrasse, Switzerland), orFugene (Grenzacherstrasse, Switzerland), Transfectam® Reagent (Promega;Madison, Wis.), TransFast™ Transfection Reagent (Promega; Madison,Wis.), Tfx™-20 Reagent (Promega; Madison, Wis.), Tfx™-50 Reagent(Promega; Madison, Wis.), DreamFect™ (OZ Biosciences; Marseille,France), EcoTransfect (OZ Biosciences; Marseille, France), TransPass^(a)D1 Transfection Reagent (New England Biolabs; Ipswich, Mass., USA),LyoVec™/LipoGen™ (Invitrogen; San Diego, Calif., USA), PerFectinTransfection Reagent (Genlantis; San Diego, Calif., USA), NeuroPORTERTransfection Reagent (Genlantis; San Diego, Calif., USA), GenePORTERTransfection reagent (Genlantis; San Diego, Calif., USA), GenePORTER 2Transfection reagent (Genlantis; San Diego, Calif., USA), CytofectinTransfection Reagent (Genlantis; San Diego, Calif., USA), BaculoPORTERTransfection Reagent (Genlantis; San Diego, Calif., USA), TroganPORTER™transfection Reagent (Genlantis; San Diego, Calif., USA), RiboFect(Bioline; Taunton, Mass., USA), PlasFect (Bioline; Taunton, Mass., USA),UniFECTOR (B-Bridge International; Mountain View, Calif., USA),SureFECTOR (B-Bridge International; Mountain View, Calif., USA), orHiFect™ (B-Bridge International, Mountain View, Calif., USA), amongothers.

Other agents can be utilized to enhance the penetration of theadministered nucleic acids, including glycols such as ethylene glycoland propylene glycol, pyrrols such as 2-pyrrol, azones, and terpenessuch as limonene and menthone.

v. Carriers

Certain compositions of the present invention also incorporate carriercompounds in the formulation. As used herein, “carrier compound” or“carrier” can refer to a nucleic acid, or analog thereof, which is inert(i.e., does not possess biological activity per se) but is recognized asa nucleic acid by in vivo processes that reduce the bioavailability of anucleic acid having biological activity by, for example, degrading thebiologically active nucleic acid or promoting its removal fromcirculation. The coadministration of a nucleic acid and a carriercompound, typically with an excess of the latter substance, can resultin a substantial reduction of the amount of nucleic acid recovered inthe liver, kidney or other extracirculatory reservoirs, presumably dueto competition between the carrier compound and the nucleic acid for acommon receptor. For example, the recovery of a partiallyphosphorothioate dsRNA in hepatic tissue can be reduced when it iscoadministered with polyinosinic acid, dextran sulfate, polycytidic acidor 4-acetamido-4′isothiocyano-stilbene-2,2′-disulfonic acid (Miyao etal., DsRNA Res. Dev., 1995, 5, 115-121; Takakura et al., DsRNA & Nucl.Acid Drug Dev., 1996, 6, 177-183.

vi. Excipients

In contrast to a carrier compound, a “pharmaceutical carrier” or“excipient” is a pharmaceutically acceptable solvent, suspending agentor any other pharmacologically inert vehicle for delivering one or morenucleic acids to an animal. The excipient can be liquid or solid and isselected, with the planned manner of administration in mind, so as toprovide for the desired bulk, consistency, etc., when combined with anucleic acid and the other components of a given pharmaceuticalcomposition. Typical pharmaceutical carriers include, but are notlimited to, binding agents (e.g., pregelatinized maize starch,polyvinylpyrrolidone or hydroxypropyl methylcellulose, etc.); fillers(e.g., lactose and other sugars, microcrystalline cellulose, pectin,gelatin, calcium sulfate, ethyl cellulose, polyacrylates or calciumhydrogen phosphate, etc.); lubricants (e.g., magnesium stearate, talc,silica, colloidal silicon dioxide, stearic acid, metallic stearates,hydrogenated vegetable oils, corn starch, polyethylene glycols, sodiumbenzoate, sodium acetate, etc.); disintegrants (e.g., starch, sodiumstarch glycolate, etc.); and wetting agents (e.g., sodium laurylsulphate, etc).

Pharmaceutically acceptable organic or inorganic excipients suitable fornon-parenteral administration which do not deleteriously react withnucleic acids can also be used to formulate the compositions of thepresent invention. Suitable pharmaceutically acceptable carriersinclude, but are not limited to, water, salt solutions, alcohols,polyethylene glycols, gelatin, lactose, amylose, magnesium stearate,talc, silicic acid, viscous paraffin, hydroxymethylcellulose,polyvinylpyrrolidone and the like.

Formulations for topical administration of nucleic acids can includesterile and non-sterile aqueous solutions, non-aqueous solutions incommon solvents such as alcohols, or solutions of the nucleic acids inliquid or solid oil bases. The solutions can also contain buffers,diluents and other suitable additives. Pharmaceutically acceptableorganic or inorganic excipients suitable for non-parenteraladministration which do not deleteriously react with nucleic acids canbe used.

Suitable pharmaceutically acceptable excipients include, but are notlimited to, water, salt solutions, alcohol, polyethylene glycols,gelatin, lactose, amylose, magnesium stearate, talc, silicic acid,viscous paraffin, hydroxymethylcellulose, polyvinylpyrrolidone and thelike.

vii. Other Components

The compositions of the present invention can additionally contain otheradjunct components conventionally found in pharmaceutical compositions,at their art-established usage levels. Thus, for example, thecompositions can contain additional, compatible, pharmaceutically-activematerials such as, for example, antipruritics, astringents, localanesthetics or anti-inflammatory agents, or can contain additionalmaterials useful in physically formulating various dosage forms of thecompositions of the present invention, such as dyes, flavoring agents,preservatives, antioxidants, opacifiers, thickening agents andstabilizers. However, such materials, when added, should not undulyinterfere with the biological activities of the components of thecompositions of the present invention. The formulations can besterilized and, if desired, mixed with auxiliary agents, e.g.,lubricants, preservatives, stabilizers, wetting agents, emulsifiers,salts for influencing osmotic pressure, buffers, colorings, flavoringsand/or aromatic substances and the like which do not deleteriouslyinteract with the nucleic acid(s) of the formulation.

Aqueous suspensions can contain substances which increase the viscosityof the suspension including, for example, sodium carboxymethylcellulose,sorbitol and/or dextran. The suspension can also contain stabilizers.

In some embodiments, pharmaceutical compositions featured in theinvention include (a) one or more iRNA compounds and (b) one or moreagents which function by a non-iRNA mechanism and which are useful intreating a hemolytic disorder. Examples of such agents include, but arenot limited to an anti-inflammatory agent, anti-steatosis agent,antiviral, and/or anti-fibrosis agent.

In addition, other substances commonly used to protect the liver, suchas silymarin, can also be used in conjunction with the iRNAs describedherein. Other agents useful for treating liver diseases includetelbivudine, entecavir, and protease inhibitors such as telaprevir andother disclosed, for example, in Tung et al., U.S. ApplicationPublication Nos. 2005/0148548, 2004/0167116, and 2003/0144217; and inHale et al., U.S. Application Publication No. 2004/0127488.

Toxicity and therapeutic efficacy of such compounds can be determined bystandard pharmaceutical procedures in cell cultures or experimentalanimals, e.g., for determining the LD50 (the dose lethal to 50% of thepopulation) and the ED50 (the dose therapeutically effective in 50% ofthe population). The dose ratio between toxic and therapeutic effects isthe therapeutic index and it can be expressed as the ratio LD50/ED50.Compounds that exhibit high therapeutic indices are preferred.

The data obtained from cell culture assays and animal studies can beused in formulating a range of dosage for use in humans. The dosage ofcompositions featured herein in the invention lies generally within arange of circulating concentrations that include the ED50 with little orno toxicity. The dosage can vary within this range depending upon thedosage form employed and the route of administration utilized. For anycompound used in the methods featured in the invention, thetherapeutically effective dose can be estimated initially from cellculture assays. A dose can be formulated in animal models to achieve acirculating plasma concentration range of the compound or, whenappropriate, of the polypeptide product of a target sequence (e.g.,achieving a decreased concentration of the polypeptide) that includesthe IC50 (i.e., the concentration of the test compound which achieves ahalf-maximal inhibition of symptoms) as determined in cell culture. Suchinformation can be used to more accurately determine useful doses inhumans. Levels in plasma can be measured, for example, by highperformance liquid chromatography.

In addition to their administration, as discussed above, the iRNAsfeatured in the invention can be administered in combination with otherknown agents effective in treatment of pathological processes mediatedby PNPLA3 expression. In any event, the administering physician canadjust the amount and timing of iRNA administration on the basis ofresults observed using standard measures of efficacy known in the art ordescribed herein.

VII. Methods for Inhibiting PNPLA3 Expression

The present invention also provides methods of inhibiting expression ofa PNPLA3 gene in a cell. The methods include contacting a cell with anRNAi agent, e.g., double stranded RNAi agent, in an amount effective toinhibit expression of PNPLA3 in the cell, thereby inhibiting expressionof PNPLA3 in the cell.

Contacting of a cell with an RNAi agent, e.g., a double stranded RNAiagent, may be done in vitro or in vivo. Contacting a cell in vivo withthe RNAi agent includes contacting a cell or group of cells within asubject, e.g., a human subject, with the RNAi agent. Combinations of invitro and in vivo methods of contacting a cell are also possible.Contacting a cell may be direct or indirect, as discussed above.Furthermore, contacting a cell may be accomplished via a targetingligand, including any ligand described herein or known in the art. Inpreferred embodiments, the targeting ligand is a carbohydrate moiety,e.g., a GalNAc₃ ligand, or any other ligand that directs the RNAi agentto a site of interest.

In one embodiment, contacting a cell with an iRNA includes “introducing”or “delivering the iRNA into the cell” by facilitating or effectinguptake or absorption into the cell. Absorption or uptake of an iRNA canoccur through unaided diffusive or active cellular processes, or byauxiliary agents or devices. Introducing an iRNA into a cell may be invitro and/or in vivo. For example, for in vivo introduction, iRNA can beinjected into a tissue site or administered systemically. In vitrointroduction into a cell includes methods known in the art such aselectroporation and lipofection. Further approaches are described hereinbelow and/or are known in the art.

The term “inhibiting,” as used herein, is used interchangeably with“reducing,” “silencing,” “downregulating”, “suppressing”, and othersimilar terms, and includes any level of inhibition.

The phrase “inhibiting expression of a PNPLA3” is intended to refer toinhibition of expression of any PNPLA3gene (such as, e.g., a mousePNPLA3 gene, a rat PNPLA3 gene, a monkey PNPLA3 gene, or a human PNPLA3gene) as well as variants or mutants of a PNPLA3 gene. Thus, the PNPLA3gene may be a wild-type PNPLA3 gene, a mutant PNPLA3 gene (such as amutant PNPLA3 gene giving rise to amyloid deposition), or a transgenicPNPLA3 gene in the context of a genetically manipulated cell, group ofcells, or organism.

“Inhibiting expression of a PNPLA3 gene” includes any level ofinhibition of a PNPLA3 gene, e.g., at least partial suppression of theexpression of a PNPLA3 gene. The expression of the PNPLA3 gene may beassessed based on the level, or the change in the level, of any variableassociated with PNPLA3 gene expression, e.g., PNPLA3 mRNA level, PNPLA3protein level, or the number or extent of amyloid deposits. This levelmay be assessed in an individual cell or in a group of cells, including,for example, a sample derived from a subject.

Inhibition may be assessed by a decrease in an absolute or relativelevel of one or more variables that are associated with PNPLA3expression compared with a control level. The control level may be anytype of control level that is utilized in the art, e.g., a pre-dosebaseline level, or a level determined from a similar subject, cell, orsample that is untreated or treated with a control (such as, e.g.,buffer only control or inactive agent control).

In some embodiments of the methods of the invention, expression of aPNPLA3 gene is inhibited by at least about 5%, at least about 10%, atleast about 15%, at least about 20%, at least about 25%, at least about30%, at least about 35%, at least about 40%, at least about 45%, atleast about 50%, at least about 55%, at least about 60%, at least about65%, at least about 70%, at least about 75%, at least about 80%, atleast about 85%, at least about 90%, at least about 91%, at least about92%, at least about 93%, at least about 94%. at least about 95%, atleast about 96%, at least about 97%, at least about 98%, or at leastabout 99%.

Inhibition of the expression of a PNPLA3 gene may be manifested by areduction of the amount of mRNA expressed by a first cell or group ofcells (such cells may be present, for example, in a sample derived froma subject) in which a PNPLA3 gene is transcribed and which has or havebeen treated (e.g., by contacting the cell or cells with an RNAi agentof the invention, or by administering an RNAi agent of the invention toa subject in which the cells are or were present) such that theexpression of a PNPLA3 gene is inhibited, as compared to a second cellor group of cells substantially identical to the first cell or group ofcells but which has not or have not been so treated (control cell(s)).In preferred embodiments, the inhibition is assessed by expressing thelevel of mRNA in treated cells as a percentage of the level of mRNA incontrol cells, using the following formula:

${\frac{\left( {{mRNA}\mspace{14mu} {in}\mspace{14mu} {control}\mspace{14mu} {cells}} \right) - \left( {{mRNA}\mspace{14mu} {in}\mspace{14mu} {treated}\mspace{14mu} {cells}} \right)}{\left( {{mRNA}\mspace{14mu} {in}\mspace{14mu} {control}\mspace{14mu} {cells}} \right)} \cdot 100}\%$

Alternatively, inhibition of the expression of a PNPLA3 gene may beassessed in terms of a reduction of a parameter that is functionallylinked to PNPLA3 gene expression, e.g., PNPLA3 protein expression orHedgehog pathway protein activities. PNPLA3 gene silencing may bedetermined in any cell expressing PNPLA3, either constitutively or bygenomic engineering, and by any assay known in the art.

Inhibition of the expression of a PNPLA3 protein may be manifested by areduction in the level of the PNPLA3 protein that is expressed by a cellor group of cells (e.g., the level of protein expressed in a samplederived from a subject). As explained above, for the assessment of mRNAsuppression, the inhibiton of protein expression levels in a treatedcell or group of cells may similarly be expressed as a percentage of thelevel of protein in a control cell or group of cells.

A control cell or group of cells that may be used to assess theinhibition of the expression of a PNPLA3 gene includes a cell or groupof cells that has not yet been contacted with an RNAi agent of theinvention. For example, the control cell or group of cells may bederived from an individual subject (e.g., a human or animal subject)prior to treatment of the subject with an RNAi agent.

The level of PNPLA3 mRNA that is expressed by a cell or group of cells,or the level of circulating PNPLA3 mRNA, may be determined using anymethod known in the art for assessing mRNA expression. In oneembodiment, the level of expression of PNPLA3 in a sample is determinedby detecting a transcribed polynucleotide, or portion thereof, e.g.,mRNA of the PNPLA3 gene. RNA may be extracted from cells using RNAextraction techniques including, for example, using acidphenol/guanidine isothiocyanate extraction (RNAzol B; Biogenesis),RNeasy RNA preparation kits (Qiagen) or PAXgene (PreAnalytix,Switzerland). Typical assay formats utilizing ribonucleic acidhybridization include nuclear run-on assays, RT-PCR, RNase protectionassays (Melton et al., Nuc. Acids Res. 12:7035), Northern blotting, insitu hybridization, and microarray analysis. Circulating PNPLA3 mRNA maybe detected using methods the described in PCT/US2012/043584, the entirecontents of which are hereby incorporated herein by reference.

In one embodiment, the level of expression of PNPLA3 is determined usinga nucleic acid probe. The term “probe”, as used herein, refers to anymolecule that is capable of selectively binding to a specific PNPLA3.Probes can be synthesized by one of skill in the art, or derived fromappropriate biological preparations. Probes may be specifically designedto be labeled. Examples of molecules that can be utilized as probesinclude, but are not limited to, RNA, DNA, proteins, antibodies, andorganic molecules.

Isolated mRNA can be used in hybridization or amplification assays thatinclude, but are not limited to, Southern or Northern analyses,polymerase chain reaction (PCR) analyses and probe arrays. One methodfor the determination of mRNA levels involves contacting the isolatedmRNA with a nucleic acid molecule (probe) that can hybridize to PNPLA3mRNA. In one embodiment, the mRNA is immobilized on a solid surface andcontacted with a probe, for example by running the isolated mRNA on anagarose gel and transferring the mRNA from the gel to a membrane, suchas nitrocellulose. In an alternative embodiment, the probe(s) areimmobilized on a solid surface and the mRNA is contacted with theprobe(s), for example, in an Affymetrix gene chip array. A skilledartisan can readily adapt known mRNA detection methods for use indetermining the level of PNPLA3 mRNA.

An alternative method for determining the level of expression of PNPLA3in a sample involves the process of nucleic acid amplification and/orreverse transcriptase (to prepare cDNA) of for example mRNA in thesample, e.g., by RT-PCR (the experimental embodiment set forth inMullis, 1987, U.S. Pat. No. 4,683,202), ligase chain reaction (Barany(1991) Proc. Natl. Acad. Sci. USA 88:189-193), self sustained sequencereplication (Guatelli et al. (1990) Proc. Natl. Acad. Sci. USA87:1874-1878), transcriptional amplification system (Kwoh et al. (1989)Proc. Natl. Acad. Sci. USA 86:1173-1177), Q-Beta Replicase (Lizardi etal. (1988) Bio/Technology 6:1197), rolling circle replication (Lizardiet al., U.S. Pat. No. 5,854,033) or any other nucleic acid amplificationmethod, followed by the detection of the amplified molecules usingtechniques well known to those of skill in the art. These detectionschemes are especially useful for the detection of nucleic acidmolecules if such molecules are present in very low numbers. Inparticular aspects of the invention, the level of expression of PNPLA3is determined by quantitative fluorogenic RT-PCR (i.e., the TaqMan™System).

The expression levels of PNPLA3 mRNA may be monitored using a membraneblot (such as used in hybridization analysis such as Northern, Southern,dot, and the like), or microwells, sample tubes, gels, beads or fibers(or any solid support comprising bound nucleic acids). See U.S. Pat.Nos. 5,770,722, 5,874,219, 5,744,305, 5,677,195 and 5,445,934, which areincorporated herein by reference. The determination of PNPLA3 expressionlevel may also comprise using nucleic acid probes in solution.

In preferred embodiments, the level of mRNA expression is assessed usingbranched DNA (bDNA) assays or real time PCR (qPCR). The use of thesemethods is described and exemplified in the Examples presented herein.

The level of PNPLA3 protein expression may be determined using anymethod known in the art for the measurement of protein levels. Suchmethods include, for example, electrophoresis, capillaryelectrophoresis, high performance liquid chromatography (HPLC), thinlayer chromatography (TLC), hyperdiffusion chromatography, fluid or gelprecipitin reactions, absorption spectroscopy, a colorimetric assays,spectrophotometric assays, flow cytometry, immunodiffusion (single ordouble), immunoelectrophoresis, Western blotting, radioimmunoassay(RIA), enzyme-linked immunosorbent assays (ELISAs), immunofluorescentassays, electrochemiluminescence assays, and the like.

In some embodiments, the efficacy of the methods of the invention can bemonitored by detecting or monitoring a reduction in a symptom of aPNPLA3 disease, such as reduction in edema swelling of the extremities,face, larynx, upper respiratory tract, abdomen, trunk, and genitals,prodrome; laryngeal swelling; nonpruritic rash; nausea; vomiting; orabdominal pain. These symptoms may be assessed in vitro or in vivo usingany method known in the art.

In some embodiments of the methods of the invention, the RNAi agent isadministered to a subject such that the RNAi agent is delivered to aspecific site within the subject. The inhibition of expression of PNPLA3may be assessed using measurements of the level or change in the levelof PNPLA3 mRNA or PNPLA3 protein in a sample derived from fluid ortissue from the specific site within the subject. In preferredembodiments, the site is selected from the group consisting of liver,choroid plexus, retina, and pancreas. The site may also be a subsectionor subgroup of cells from any one of the aforementioned sites. The sitemay also include cells that express a particular type of receptor.

VIII. Methods of Treating or Preventing PNPLA3-Associated Diseases

The present invention provides therapeutic and prophylactic methodswhich include administering to a subject with a PNPLA3-associateddisease, disorder, and/or condition, or prone to developing, aPNPLA3-associated disease, disorder, and/or condition, compositionscomprising an iRNA agent, or pharmaceutical compositions comprising aniRNA agent, or vectors comprising an iRNA of the invention. Non-limitingexamples of PNPLA3-associated diseases include, for example, fatty liver(steatosis), nonalcoholic steatohepatitis (NASH), cirrhosis of theliver, accumulation of fat in the liver, inflammation of the liver,hepatocellular necrosis, liver fibrosis, obesity, or nonalcoholic fattyliver disease (NAFLD). In one embodiment, the PNPLA3-associated diseaseis NAFLD. In another embodiment, the PNPLA3-associated disease is NASH.In another embodiment, the PNPLA3-associated disease is fatty liver(steatosis). In another embodiment, the PNPLA3-associated disease isinsulin resistance. In another embodiment, the PNPLA3-associated diseaseis enot insulin resistance.

The methods of the invention are useful for treating a subject having aPNPLA3-associated disease, e.g., a subject that would benefit fromreduction in PNPLA3 gene expression and/or PNPLA3 protein production. Inone aspect, the present invention provides methods of reducing the levelof Patatin-Like Phospholipase Domain Containing 3 (PNPLA3) geneexpression in a subject having nonalcoholic fatty liver disease (NAFLD).In another aspect, the present invention provides methods of reducingthe level of PNPLA3 protein in a subject with NAFLD. The presentinvention also provides methods of reducing the level of activity of thehedgehog pathway in a subject with NAFLD.

In another aspect, the present invention provides methods of treating asubject having an NAFLD. In one aspect, the present invention providesmethods of treating a subject having an PNPLA3-associated disease, e.g.,fatty liver (steatosis), nonalcoholic steatohepatitis (NASH), cirrhosisof the liver, accumulation of fat in the liver, inflammation of theliver, hepatocellular necrosis, liver fibrosis, obesity, or nonalcoholicfatty liver disease (NAFLD). The treatment methods (and uses) of theinvention include administering to the subject, e.g., a human, atherapeutically effective amount of an iRNA agent of the inventiontargeting a PNPLA3 gene or a pharmaceutical composition comprising aniRNA agent of the invention targeting a PNPLA3 gene or a vector of theinvention comprising an iRNA agent targeting an PNPLA3 gene.

In one aspect, the invention provides methods of preventing at least onesymptom in a subject having NAFLD, e.g., the presence of elevatedhedgehog signaling pathways, fatigue, weakness, weight loss, loss ofapetite, nausea, abdominal pain, spider-like blood vessels, yellowing ofthe skin and eyes (jaundice), itching, fluid build up and swelling ofthe legs (edema), abdomen swelling (ascites), and mental confusion. Themethods include administering to the subject a therapeutically effectiveamount of the iRNA agent, e.g. dsRNA, pharmaceutical compositions, orvectors of the invention, thereby preventing at least one symptom in thesubject having a disorder that would benefit from reduction in PNPLA3gene expression.

In another aspect, the present invention provides uses of atherapeutically effective amount of an iRNA agent of the invention fortreating a subject, e.g., a subject that would benefit from a reductionand/or inhibition of PNPLA3 gene expression.

In a further aspect, the present invention provides uses of an iRNAagent, e.g., a dsRNA, of the invention targeting an PNPLA3 gene orpharmaceutical composition comprising an iRNA agent targeting an PNPLA3gene in the manufacture of a medicament for treating a subject, e.g., asubject that would benefit from a reduction and/or inhibition of PNPLA3gene expression and/or PNPLA3 protein production, such as a subjecthaving a disorder that would benefit from reduction in PNPLA3 geneexpression, e.g., a PNPLA3-associated disease.

In another aspect, the invention provides uses of an iRNA, e.g., adsRNA, of the invention for preventing at least one symptom in a subjectsuffering from a disorder that would benefit from a reduction and/orinhibition of PNPLA3 gene expression and/or PNPLA3 protein production.

In a further aspect, the present invention provides uses of an iRNAagent of the invention in the manufacture of a medicament for preventingat least one symptom in a subject suffering from a disorder that wouldbenefit from a reduction and/or inhibition of PNPLA3 gene expressionand/or SCAP protein production, such as a PNPLA3-associated disease.

In one embodiment, an iRNA agent targeting PNPLA3 is administered to asubject having a PNPLA3-associated disease, e.g., nonalcoholic fattyliver disease (NAFLD), such that the expression of a PNPLA3 gene, e.g.,in a cell, tissue, blood or other tissue or fluid of the subject arereduced by at least about 10%, 11%, 12%, 13%, 14%, 15%, 16%, 17%, 18%,19%, 20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%,33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%,47%, 48%, 49%, 50%, 51%, 52%, 53%, 54%, 55%, 56%, 57%, 58%, 59%, 60%,61%, 62%, 62%, 64%, 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 723%, 74%,75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%,89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or at least about 99%or more when the dsRNA agent is administered to the subject.

The methods and uses of the invention include administering acomposition described herein such that expression of the target PNPLA3gene is decreased, such as for about 1, 2, 3, 4 5, 6, 7, 8, 12, 16, 18,24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72, 76, or about 80hours. In one embodiment, expression of the target PNPLA3 gene isdecreased for an extended duration, e.g., at least about two, three,four, five, six, seven days or more, e.g., about one week, two weeks,three weeks, or about four weeks or longer.

Administration of the dsRNA according to the methods and uses of theinvention may result in a reduction of the severity, signs, symptoms,and/or markers of such diseases or disorders in a patient with aPNPLA3-associated disease, e.g., nonalcoholic fatty liver disease(NAFLD). By “reduction” in this context is meant a statisticallysignificant decrease in such level. The reduction can be, for example,at least about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%,60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or about 100%.

Efficacy of treatment or prevention of disease can be assessed, forexample by measuring disease progression, disease remission, symptomseverity, reduction in pain, quality of life, dose of a medicationrequired to sustain a treatment effect, level of a disease marker or anyother measurable parameter appropriate for a given disease being treatedor targeted for prevention. It is well within the ability of one skilledin the art to monitor efficacy of treatment or prevention by measuringany one of such parameters, or any combination of parameters. Forexample, efficacy of treatment of NAFLD may be assessed, for example, byperiodic monitoring of NAFLD symptoms, liver fat levels, or expressionof downstream genes. Comparison of the later readings with the initialreadings provide a physician an indication of whether the treatment iseffective. It is well within the ability of one skilled in the art tomonitor efficacy of treatment or prevention by measuring any one of suchparameters, or any combination of parameters. In connection with theadministration of an iRNA targeting PNPLA3 or pharmaceutical compositionthereof, “effective against” an PNPLA3-associated disease indicates thatadministration in a clinically appropriate manner results in abeneficial effect for at least a statistically significant fraction ofpatients, such as improvement of symptoms, a cure, a reduction indisease, extension of life, improvement in quality of life, or othereffect generally recognized as positive by medical doctors familiar withtreating NAFLD and/or an PNPLA3-associated disease and the relatedcauses.

A treatment or preventive effect is evident when there is astatistically significant improvement in one or more parameters ofdisease status, or by a failure to worsen or to develop symptoms wherethey would otherwise be anticipated. As an example, a favorable changeof at least 10% in a measurable parameter of disease, and preferably atleast 20%, 30%, 40%, 50% or more can be indicative of effectivetreatment. Efficacy for a given iRNA drug or formulation of that drugcan also be judged using an experimental animal model for the givendisease as known in the art. When using an experimental animal model,efficacy of treatment is evidenced when a statistically significantreduction in a marker or symptom is observed.

Subjects can be administered a therapeutic amount of iRNA, such as about0.01 mg/kg, 0.02 mg/kg, 0.03 mg/kg, 0.04 mg/kg, 0.05 mg/kg, 0.1 mg/kg,0.15 mg/kg, 0.2 mg/kg, 0.25 mg/kg, 0.3 mg/kg, 0.35 mg/kg, 0.4 mg/kg,0.45 mg/kg, 0.5 mg/kg, 0.55 mg/kg, 0.6 mg/kg, 0.65 mg/kg, 0.7 mg/kg,0.75 mg/kg, 0.8 mg/kg, 0.85 mg/kg, 0.9 mg/kg, 0.95 mg/kg, 1.0 mg/kg, 1.1mg/kg, 1.2 mg/kg, 1.3 mg/kg, 1.4 mg/kg, 1.5 mg/kg, 1.6 mg/kg, 1.7 mg/kg,1.8 mg/kg, 1.9 mg/kg, 2.0 mg/kg, 2.1 mg/kg, 2.2 mg/kg, 2.3 mg/kg, 2.4mg/kg, 2.5 mg/kg dsRNA, 2.6 mg/kg dsRNA, 2.7 mg/kg dsRNA, 2.8 mg/kgdsRNA, 2.9 mg/kg dsRNA, 3.0 mg/kg dsRNA, 3.1 mg/kg dsRNA, 3.2 mg/kgdsRNA, 3.3 mg/kg dsRNA, 3.4 mg/kg dsRNA, 3.5 mg/kg dsRNA, 3.6 mg/kgdsRNA, 3.7 mg/kg dsRNA, 3.8 mg/kg dsRNA, 3.9 mg/kg dsRNA, 4.0 mg/kgdsRNA, 4.1 mg/kg dsRNA, 4.2 mg/kg dsRNA, 4.3 mg/kg dsRNA, 4.4 mg/kgdsRNA, 4.5 mg/kg dsRNA, 4.6 mg/kg dsRNA, 4.7 mg/kg dsRNA, 4.8 mg/kgdsRNA, 4.9 mg/kg dsRNA, 5.0 mg/kg dsRNA, 5.1 mg/kg dsRNA, 5.2 mg/kgdsRNA, 5.3 mg/kg dsRNA, 5.4 mg/kg dsRNA, 5.5 mg/kg dsRNA, 5.6 mg/kgdsRNA, 5.7 mg/kg dsRNA, 5.8 mg/kg dsRNA, 5.9 mg/kg dsRNA, 6.0 mg/kgdsRNA, 6.1 mg/kg dsRNA, 6.2 mg/kg dsRNA, 6.3 mg/kg dsRNA, 6.4 mg/kgdsRNA, 6.5 mg/kg dsRNA, 6.6 mg/kg dsRNA, 6.7 mg/kg dsRNA, 6.8 mg/kgdsRNA, 6.9 mg/kg dsRNA, 7.0 mg/kg dsRNA, 7.1 mg/kg dsRNA, 7.2 mg/kgdsRNA, 7.3 mg/kg dsRNA, 7.4 mg/kg dsRNA, 7.5 mg/kg dsRNA, 7.6 mg/kgdsRNA, 7.7 mg/kg dsRNA, 7.8 mg/kg dsRNA, 7.9 mg/kg dsRNA, 8.0 mg/kgdsRNA, 8.1 mg/kg dsRNA, 8.2 mg/kg dsRNA, 8.3 mg/kg dsRNA, 8.4 mg/kgdsRNA, 8.5 mg/kg dsRNA, 8.6 mg/kg dsRNA, 8.7 mg/kg dsRNA, 8.8 mg/kgdsRNA, 8.9 mg/kg dsRNA, 9.0 mg/kg dsRNA, 9.1 mg/kg dsRNA, 9.2 mg/kgdsRNA, 9.3 mg/kg dsRNA, 9.4 mg/kg dsRNA, 9.5 mg/kg dsRNA, 9.6 mg/kgdsRNA, 9.7 mg/kg dsRNA, 9.8 mg/kg dsRNA, 9.9 mg/kg dsRNA, 9.0 mg/kgdsRNA, 10 mg/kg dsRNA, 15 mg/kg dsRNA, 20 mg/kg dsRNA, 25 mg/kg dsRNA,30 mg/kg dsRNA, 35 mg/kg dsRNA, 40 mg/kg dsRNA, 45 mg/kg dsRNA, or about50 mg/kg dsRNA. In one embodiment, subjects can be administered 0.5mg/kg of the dsRNA. Values and ranges intermediate to the recited valuesare also intended to be part of this invention.

Administration of the iRNA can reduce the presence of PNPLA3 proteinlevels, e.g., in a cell, tissue, blood, urine or other compartment ofthe patient by at least about 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%,14%, 15%, 16%, 17%, 18%, 19%, 20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%,28%, 29%, 30%, 31%, 32%, 33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%,42%, 43%, 44%, 45%, 46%, 47%, 48%, 49%, 50%, 51%, 52%, 53%, 54%, 55%,56%, 57%, 58%, 59%, 60%, 61%, 62%, 63%, 64%, 65%, 66%, 67%, 68%, 69%,70%, 71%, 72%, 73%, 74%, 74%, 76%, 77%, 78%, 81%, 82%, 83%, 84%, 85%,86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or atleast about 99% or more.

Before administration of a full dose of the iRNA, patients can beadministered a smaller dose, such as a 5% infusion, and monitored foradverse effects, such as an allergic reaction. In another example, thepatient can be monitored for unwanted immunostimulatory effects, such asincreased cytokine (e.g., TNF-alpha or INF-alpha) levels.

Owing to the inhibitory effects on PNPLA3 expression, a compositionaccording to the invention or a pharmaceutical composition preparedtherefrom can enhance the quality of life.

An iRNA of the invention may be administered in “naked” form, where themodified or unmodified iRNA agent is directly suspended in aqueous orsuitable buffer solvent, as a “free iRNA.” A free iRNA is administeredin the absence of a pharmaceutical composition. The free iRNA may be ina suitable buffer solution. The buffer solution may comprise acetate,citrate, prolamine, carbonate, or phosphate, or any combination thereof.In one embodiment, the buffer solution is phosphate buffered saline(PBS). The pH and osmolarity of the buffer solution containing the iRNAcan be adjusted such that it is suitable for administering to a subject.

Alternatively, an iRNA of the invention may be administered as apharmaceutical composition, such as a dsRNA liposomal formulation.

Subjects that would benefit from a reduction and/or inhibition of PNPLA3gene expression are those having nonalcoholic fatty liver disease(NAFLD) and/or an PNPLA3-associated disease or disorder as describedherein.

Treatment of a subject that would benefit from a reduction and/orinhibition of PNPLA3 gene expression includes therapeutic andprophylactic treatment.

The invention further provides methods and uses of an iRNA agent or apharmaceutical composition thereof for treating a subject that wouldbenefit from reduction and/or inhibition of PNPLA3 gene expression,e.g., a subject having a PNPLA3-associated disease, in combination withother pharmaceuticals and/or other therapeutic methods, e.g., with knownpharmaceuticals and/or known therapeutic methods, such as, for example,those which are currently employed for treating these disorders.

For example, in certain embodiments, an iRNA targeting a PNPLA3 gene isadministered in combination with, e.g., an agent useful in treating anPNPLA3-associated disease as described elsewhere herein. For example,additional therapeutics and therapeutic methods suitable for treating asubject that would benefit from reduction in PNPLA3 expression, e.g., asubject having a PNPLA3-associated disease, include an iRNA agenttargeting a different portion of the PNPLA3 gene, a therapeutic agent,and/or procedures for treating a PNPLA3-associated disease or acombination of any of the foregoing.

In certain embodiments, a first iRNA agent targeting a PNPLA3 gene isadministered in combination with a second iRNA agent targeting adifferent portion of the PNPLA3 gene. For example, the first RNAi agentcomprises a first sense strand and a first antisense strand forming adouble stranded region, wherein substantially all of the nucleotides ofsaid first sense strand and substantially all of the nucleotides of thefirst antisense strand are modified nucleotides, wherein said firstsense strand is conjugated to a ligand attached at the 3′-terminus, andwherein the ligand is one or more GalNAc derivatives attached through abivalent or trivalent branched linker; and the second RNAi agentcomprises a second sense strand and a second antisense strand forming adouble stranded region, wherein substantially all of the nucleotides ofthe second sense strand and substantially all of the nucleotides of thesecond antisense strand are modified nucleotides, wherein the secondsense strand is conjugated to a ligand attached at the 3′-terminus, andwherein the ligand is one or more GalNAc derivatives attached through abivalent or trivalent branched linker.

In one embodiment, all of the nucleotides of the first and second sensestrand and/or all of the nucleotides of the first and second antisensestrand comprise a modification.

In one embodiment, the at least one of the modified nucleotides isselected from the group consisting of a 3′-terminal deoxy-thymine (dT)nucleotide, a 2′-O-methyl modified nucleotide, a 2′-fluoro modifiednucleotide, a 2′-deoxy-modified nucleotide, a locked nucleotide, anunlocked nucleotide, a conformationally restricted nucleotide, aconstrained ethyl nucleotide, an abasic nucleotide, a 2′-amino-modifiednucleotide, a 2′-O-allyl-modified nucleotide, 2′-C-alkyl-modifiednucleotide, 2′-hydroxly-modified nucleotide, a 2′-methoxyethyl modifiednucleotide, a 2′-O-alkyl-modified nucleotide, a morpholino nucleotide, aphosphoramidate, a non-natural base comprising nucleotide, atetrahydropyran modified nucleotide, a 1,5-anhydrohexitol modifiednucleotide, a cyclohexenyl modified nucleotide, a nucleotide comprisinga phosphorothioate group, a nucleotide comprising a methylphosphonategroup, a nucleotide comprising a 5′-phosphate, and a nucleotidecomprising a 5′-phosphate mimic.

In certain embodiments, a first iRNA agent targeting a PNPLA3 gene isadministered in combination with a second iRNA agent targeting a genethat is different from the PNPLA3 gene. For example, the iRNA agenttargeting the PNPLA3 gene may be administered in combination with aniRNA agent targeting the SCAP gene. The first iRNA agent targeting aPNPLA3 gene and the second iRNA agent targeting a gene different fromthe PNPLA3 gene, e.g., the SCAP gene, may be administred as parts of thesame pharmaceutical composition. Alternatively, the first iRNA agenttargeting a PNPLA3 gene and the second iRNA agent targeting a genedifferent from the PNPLA3 gene, e.g., the SCAP gene, may be administeredas parts of different pharmaceutical compositions.

The iRNA agent and an additional therapeutic agent and/or treatment maybe administered at the same time and/or in the same combination, e.g.,parenterally, or the additional therapeutic agent can be administered aspart of a separate composition or at separate times and/or by anothermethod known in the art or described herein.

The present invention also provides methods of using an iRNA agent ofthe invention and/or a composition containing an iRNA agent of theinvention to reduce and/or inhibit PNPLA3 expression in a cell. In otheraspects, the present invention provides an iRNA of the invention and/ora composition comprising an iRNA of the invention for use in reducingand/or inhibiting PNPLA3 gene expression in a cell. In yet otheraspects, use of an iRNA of the invention and/or a composition comprisingan iRNA of the invention for the manufacture of a medicament forreducing and/or inhibiting PNPLA3 gene expression in a cell areprovided. In still other aspects, the present invention provides an iRNAof the invention and/or a composition comprising an iRNA of theinvention for use in reducing and/or inhibiting PNPLA3 proteinproduction in a cell. In yet other aspects, use of an iRNA of theinvention and/or a composition comprising an iRNA of the invention forthe manufacture of a medicament for reducing and/or inhibiting PNPLA3protein production in a cell are provided. The methods and uses includecontacting the cell with an iRNA, e.g., a dsRNA, of the invention andmaintaining the cell for a time sufficient to obtain degradation of themRNA transcript of an PNPLA3 gene, thereby inhibiting expression of thePNPLA3 gene or inhibiting PNPLA3 protein production in the cell.

Reduction in gene expression can be assessed by any methods known in theart. For example, a reduction in the expression of PNPLA3 may bedetermined by determining the mRNA expression level of PNPLA3 usingmethods routine to one of ordinary skill in the art, e.g., Northernblotting, qRT-PCR, by determining the protein level of PNPLA3 usingmethods routine to one of ordinary skill in the art, such as Westernblotting, immunological techniques, flow cytometry methods, ELISA,and/or by determining a biological activity of PNPLA3.

In the methods and uses of the invention the cell may be contacted invitro or in vivo, i.e., the cell may be within a subject.

A cell suitable for treatment using the methods of the invention may beany cell that expresses an PNPLA3 gene, e.g., a cell from a subjecthaving NAFLD or a cell comprising an expression vector comprising aPNPLA3 gene or portion of a PNPLA3 gene. A cell suitable for use in themethods and uses of the invention may be a mammalian cell, e.g., aprimate cell (such as a human cell or a non-human primate cell, e.g., amonkey cell or a chimpanzee cell), a non-primate cell (such as a cowcell, a pig cell, a camel cell, a llama cell, a horse cell, a goat cell,a rabbit cell, a sheep cell, a hamster, a guinea pig cell, a cat cell, adog cell, a rat cell, a mouse cell, a lion cell, a tiger cell, a bearcell, or a buffalo cell), a bird cell (e.g., a duck cell or a goosecell), or a whale cell. In one embodiment, the cell is a human cell.

PNPLA3 gene expression may be inhibited in the cell by at least about5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%,20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%,34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%,48%, 49%, 50%, 51%, 52%, 53%, 54%, 55%, 56%, 57%, 58%, 59%, 60%, 61%,62%, 63%, 64%, 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 73%, 74%, 75%,76%, 777% 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%,90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or about 100%.

PNPLA3 protein production may be inhibited in the cell by at least about5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%,20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%,34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%,48%, 49%, 50%, 51%, 52%, 53%, 54%, 55%, 56%, 57%, 58%, 59%, 60%, 61%,62%, 63%, 64%, 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 73%, 74%, 745%,76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%,90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or about 100%.

The in vivo methods and uses of the invention may include administeringto a subject a composition containing an iRNA, where the iRNA includes anucleotide sequence that is complementary to at least a part of an RNAtranscript of the PNPLA3 gene of the mammal to be treated. When theorganism to be treated is a human, the composition can be administeredby any means known in the art including, but not limited tosubcutaneous, intravenous, oral, intraperitoneal, or parenteral routes,including intracranial (e.g., intraventricular, intraparenchymal andintrathecal), intramuscular, transdermal, airway (aerosol), nasal,rectal, and topical (including buccal and sublingual) administration. Incertain embodiments, the compositions are administered by subcutaneousor intravenous infusion or injection. In one embodiment, thecompositions are administered by subcutaneous injection.

In some embodiments, the administration is via a depot injection. Adepot injection may release the iRNA in a consistent way over aprolonged time period. Thus, a depot injection may reduce the frequencyof dosing needed to obtain a desired effect, e.g., a desired inhibitionof PNPLA3, or a therapeutic or prophylactic effect. A depot injectionmay also provide more consistent serum concentrations. Depot injectionsmay include subcutaneous injections or intramuscular injections. Inpreferred embodiments, the depot injection is a subcutaneous injection.

In some embodiments, the administration is via a pump. The pump may bean external pump or a surgically implanted pump. In certain embodiments,the pump is a subcutaneously implanted osmotic pump. In otherembodiments, the pump is an infusion pump. An infusion pump may be usedfor intravenous, subcutaneous, arterial, or epidural infusions. Inpreferred embodiments, the infusion pump is a subcutaneous infusionpump. In other embodiments, the pump is a surgically implanted pump thatdelivers the iRNA to the subject.

The mode of administration may be chosen based upon whether local orsystemic treatment is desired and based upon the area to be treated. Theroute and site of administration may be chosen to enhance targeting.

In one aspect, the present invention also provides methods forinhibiting the expression of an PNPLA3 gene in a mammal, e.g., a human.The present invention also provides a composition comprising an iRNA,e.g., a dsRNA, that targets an PNPLA3 gene in a cell of a mammal for usein inhibiting expression of the PNPLA3 gene in the mammal. In anotheraspect, the present invention provides use of an iRNA, e.g., a dsRNA,that targets an PNPLA3 gene in a cell of a mammal in the manufacture ofa medicament for inhibiting expression of the PNPLA3 gene in the mammal.

The methods and uses include administering to the mammal, e.g., a human,a composition comprising an iRNA, e.g., a dsRNA, that targets an PNPLA3gene in a cell of the mammal and maintaining the mammal for a timesufficient to obtain degradation of the mRNA transcript of the PNPLA3gene, thereby inhibiting expression of the PNPLA3 gene in the mammal.

Reduction in gene expression can be assessed in peripheral blood sampleof the iRNA-administered subject by any methods known it the art, e.g.qRT-PCR, described herein. Reduction in protein production can beassessed by any methods known it the art and by methods, e.g., ELISA orWestern blotting, described herein. In one embodiment, a tissue sampleserves as the tissue material for monitoring the reduction in PNPLA3gene and/or protein expression. In another embodiment, a blood sampleserves as the tissue material for monitoring the reduction in PNPLA3gene and/or protein expression.

In one embodiment, verification of RISC medicated cleavage of target invivo following administration of iRNA agent is done by performing5′-RACE or modifications of the protocol as known in the art (Lasham Aet al., (2010) Nucleic Acid Res., 38 (3) p-e19) (Zimmermann et al.(2006) Nature 441: 111-4).

This invention is further illustrated by the following examples whichshould not be construed as limiting. The entire contents of allreferences, patents and published patent applications cited throughoutthis application, as well as the Sequence Listing, are herebyincorporated herein by reference.

Examples Example 1. iRNA Synthesis Source of Reagents

Where the source of a reagent is not specifically given herein, suchreagent can be obtained from any supplier of reagents for molecularbiology at a quality/purity standard for application in molecularbiology.

Transcripts

siRNA Design

A set of iRNAs targeting human PNPLA3, “Patatin-Like PhospholipaseDomain Containing 3” (RefSeq Accession No. NM_025225, GI:17196625; SEQID NO:1 and SEQ ID NO:2) and PNPLA3 orthologs from toxicology species(for example, GenBank Accession Nos. GI: 544461323 (REFSEQ Accession No.XM_005567051.1, cynomolgus monkey; SEQ ID NO:7 and SEQ ID NO:8); GI:544461325 (RefSeq Accession No. XM_005567052.1, cynomolgus monkey; SEQID NO:11 and SEQ ID NO:12); GI:297261270 (RefSeq Accession No.XM_001109144.2, rhesus monkey, SEQ ID NO:9 and SEQ ID NO:10);GI:144226244 (RefSeq Accession No. NM_054088.3, mouse; SEQ ID NO:3 andSEQ ID NO:4); GI:537361027 (RefSeq Accession No. NM_001282324.1, rat;SEQ ID NO:5 and SEQ ID NO:6)) were designed using custom R and Pythonscripts.

The human PNPLA3 RefSeq mRNA has a length of 2805 bases. The rationaleand method for the set of iRNA designs is as follows: the predictedefficacy for every potential 19mer iRNA from position 1 through position2805 of human PNPLA3 mRNA (containing the coding region) was determinedusing a linear model that predicted the direct measure of mRNA knockdownbased on the data of more than 20,000 distinct iRNA designs targeting alarge number of vertebrate genes. Subsets of the PNPLA3 iRNAs weredesigned with perfect or near-perfect matches between human andcynomolgus monkey. A further subset was designed with perfect ornear-perfect matches to mouse and rat PNPLA3 orthologs. For each strandof the iRNA, a custom Python script was used in a brute force search tomeasure the number and positions of mismatches between the iRNA and allpotential alignments in the target species transcriptome. Extra weightwas given to mismatches in the seed region, defined here as positions2-9 of the antisense oligonucleotide, as well the cleavage site of theiRNA, defined here as positions 10-11 of the antisense oligonucleotide.The relative weights for the mismatches were 2.8 for seed mismatches,1.2 for cleavage site mismatches, and 1 for mismatches in otherpositions up through antisense position 19. Mismatches in the firstposition were ignored. A specificity score was calculated for eachstrand by summing the value of each weighted mismatch. Preference wasgiven to iRNAs whose antisense score in human and cynomolgus monkey wasgreater than or equal to 3.0 and predicted efficacy was greater than orequal to 70% knockdown of the PNPLA3 transcript. One set of iRNAscontaining structure-activity modifications, including various2′-O-methyl and 2′-fluoro substitution patterns, were also designed,synthesized and screened.

A detailed list of the unmodified PNPLA3 sense and antisense strandsequences is shown in Table 3.

siRNA Synthesis

PNPLA3 iRNA sequences were synthesized at 1 μmol scale on a Mermade 192synthesizer (BioAutomation) using the solid support mediatedphosphoramidite chemistry. The solid support is controlled pore glass(500 A) loaded with custom GalNAc ligand or universal solid support (AMbiochemical). Ancillary synthesis reagents, 2′-F and 2′-O-Methyl RNA anddeoxy phosphoramidites were obtained from Thermo-Fisher (Milwaukee,Wis.) and Hongene (China). 2′F 2′-O-Methyl, GNA (glycol nucleic acids),5′phosphate and other modifications were introduced using thecorresponding phosphoramidites. Synthesis of 3′ GalNAc conjugated singlestrands was performed on a GalNAc modified CPG support. Custom CPGuniversal solid support was used for the synthesis of antisense singlestrands. Coupling time for all phosphoramidites (100 mM in acetonitrile)was 5 minutes employing 5-Ethylthio-1H-tetrazole (ETT) as activator (0.6M in acetonitrile). Phosphorothioate linkages were generated using a 50mM solution of 3-((Dimethylamino-methylidene)amino)-3H-1,2,4-dithiazole-3-thione (DDTT, obtained from Chemgenes(Wilmington, Mass., USA)) in anhydrous acetonitrile/pyridine (1:1 v/v).Oxidation time was 3 minutes. All sequences were synthesized with finalremoval of the DMT group (“DMT off”).

Upon completion of the solid phase synthesis, oligoribonucleotides werecleaved from the solid support and deprotected in sealed 96 deep wellplates using 200 μL Aqueous Methylamine reagents at 60° C. for 20minutes. For sequences containing 2′ ribo residues (2′-OH) that wereprotected with a tert-butyl dimethyl silyl (TBDMS) group, a second stepdeprotection was performed using TEA.3HF (triethylamine trihydrofluoride) reagent. To the methylamine deprotection solution, 200 uL ofdimethyl sulfoxide (DMSO) and 300 ul TEA.3HF reagent were added and thesolution was incubated for additional 20 minutes at 60° C. At the end ofcleavage and deprotection step, the synthesis plate was allowed to cometo room temperature and was precipitated by addition of 1 mL ofacetontile: ethanol mixture (9:1). The plates were cooled at −80 C for 2hours, superanatant was decanted carefully with the aid of a multichannel pipette. The oligonucleotide pellet was re-suspended in 20 mMNaOAc buffer and was desalted using a 5 mL HiTrap size exclusion column(GE Healthcare) on an AKTA Purifier System equipped with an A905autosampler and a Frac 950 fraction collector. Desalted samples werecollected in 96-well plates. Samples from each sequence were analyzed byLC-MS to confirm the identity, UV (260 nm) for quantification and aselected set of samples by IEX chromatography to determine purity.

Annealing of PNPLA3 single strands was performed on a Tecan liquidhandling robot. Equimolar mixture of sense and antisense single strandswere combined and annealed in 96 well plates. After combining thecomplementary single strands, the 96-well plate was sealed tightly andheated in an oven at 100° C. for 10 minutes and allowed to come slowlyto room temperature over a period 2-3 hours. The concentration of eachduplex was normalized to 10 μM in 1×PBS.

TABLE 2 Abbreviations of nucleotide monomers used in nucleic acidsequence representation. It will be understood that these monomers, whenpresent in an oligonucleotide, are mutually linked by5′-3′-phosphodiester bonds. Abbreviation Nucleotide(s) AAdenosine-3′-phosphate Af 2′-fluoroadenosine-3′-phosphate Afs2′-fluoroadenosine-3′-phosphorothioate As adenosine-3′-phosphorothioateC cytidine-3′-phosphate Cf 2′-fluorocytidine-3′-phosphate Cfs2′-fluorocytidine-3′-phosphorothioate Cs cytidine-3′-phosphorothioate Gguanosine-3′-phosphate Gf 2′-fluoroguanosine-3′-phosphate Gfs2′-fluoroguanosine-3′-phosphorothioate Gs guanosine-3′-phosphorothioateT 5′-methyluridine-3′-phosphate Tf2′-fluoro-5-methyluridine-3′-phosphate Tfs2′-fluoro-5-methyluridine-3′-phosphorothioate Ts5-methyluridine-3′-phosphorothioate U Uridine-3′-phosphate Uf2′-fluorouridine-3′-phosphate Ufs 2′-fluorouridine-3′-phosphorothioateUs uridine-3′-phosphorothioate N any nucleotide (G, A, C, T or U) a2′-O-methyladenosine-3′-phosphate as2′-O-methyladenosine-3′-phosphorothioate c2′-O-methylcytidine-3′-phosphate cs2′-O-methylcytidine-3′-phosphorothioate g2′-O-methylguanosine-3′-phosphate gs2′-O-methylguanosine-3′-phosphorothioate t2′-O-methyl-5-methyluridine-3′-phosphate ts2′-O-methyl-5-methyluridine-3′-phosphorothioate u2′-O-methyluridine-3′-phosphate us2′-O-methyluridine-3′-phosphorothioate s phosphorothioate linkage L96N-[tris(GalNAc-alkyl)-amidodecanoyl)]-4-hydroxyprolinolHyp-(GalNAc-alkyl)3 (dt) 2′-deoxythymidine-3′-phosphate Y342-hydroxymethyl-tetrahydrofurane-4-methoxy-3-phosphate (abasic 2′-OMefuranose) Y44 2-hydroxymethyl-tetrahydrofurane-5-phosphate (Agn)Adenosine-glycol nucleic acid (GNA) (Tgn) Thymidine-glycol nucleic acid(GNA) S-Isomer (Cgn) Cytidine-glycol nucleic acid (GNA) P Phosphate VPVinyl-phosphate

TABLE 3 Unmodified Sense and Antisense Strand Sequences of PNPLA3 RNAiagents Oligo Name Start Position Sense Sequence (5′-3′) SEQ ID NONM_025225.2_219-240_C21A_sense 217 GGCUUCCUGGGCUUCUACCAA 19NM_054088.3_250-271_sense 248 UAUAAUGGAGAUCCUCAUGGA 20NM_025225.2_388-409_C21A_sense 386 UUGUGCGGAAGGCCAGGAGUA 21NM_025225.2_396-417_sense 394 AAGGCCAGGAGUCGGAACAUU 22NM_025225.2_397-418_G21A_senseense 395 AGGCCAGGAGUCGGAACAUUA 23NM_054088.3_443-464_senseense 441 GUGUCUGAGUUCCAUUCCAAA 24NM_054088.3_469-490_G21A_senseense 467 AGUCGUGGAUGCCCUGGUGUA 25NM_025225.2_549-570_sense 547 AACGUUCUGGUGUCUGACUUU 26NM_025225.2_562-583_G21A_sense 560 CUGACUUUCGGUCCAAAGACA 27NM_025225.2_569-590_sense 567 UCGGUCCAAAGACGAAGUCGU 28NM_025225.2_570-591_G21A_sense 568 CGGUCCAAAGACGAAGUCGUA 29NM_025225.2_579-600_G21A_sense 577 GACGAAGUCGUGGAUGCCUUA 30NM_025225.2_596-617_sense 594 CUUGGUAUGUUCCUGCUUCAU 31NM_025225.2_630-651_C21A_sense 628 GGCCUUAUCCCUCCUUCCUUA 32NM_025225.2_674-695_C21A_sense 672 AGGAGUGAGUGACAACGUACA 33NM_025225.2_678-699_C21A_sense 676 GUGAGUGACAACGUACCCUUA 34NM_025225.2_701-722_C21A_sense 699 UGAUGCCAAAACAACCAUCAA 35NM_025225.2_746-767_sense 744 CGACAUCUGCCCUAAAGUCAA 36NM_054088.3_770-791_C21A_sense 768 UGCUAUCAAGGGUACCUGGAA 37NM_025225.2_771-792_C21A_sense 769 ACGAACUUUCUUCAUGUGGAA 38NM_025225.2_817-838_C21A_sense 815 GCACAGGGAACCUCUACCUUA 39NM_025225.2_871-892_C21A_sense 869 UGCUGGGAGAGAUAUGCCUUA 40NM_025225.2_874-895_G21A_sense 872 UGGGAGAGAUAUGCCUUCGAA 41NM_025225.2_878-899_sense 876 AGAGAUAUGCCUUCGAGGAUA 42NM_025225.2_882-903_G21A_sense 880 AUAUGCCUUCGAGGAUAUUUA 43NM_025225.2_885-906_sense 883 UGCCUUCGAGGAUAUUUGGAU 44NM_025225.2_908-929_sense 906 AUUCAGGUUCUUGGAAGAGAA 45NM_025225.2_964-985_C21A_sense 962 CAUCCUCAGAAGGGAUGGAUA 46NM_025225.2_1100-1121_sense 1098 CCUGCCCUGGGAUGAGAGCAU 47NM_054088.3_1163-1184_G21A_sense 1161 UCCCAGGUUUGUGCCCGAAUA 48NM_054088.3_1165-1186_C21A_sense 1163 CCAGGUUUGUGCCCGAAUGAA 49NM_025225.2_1173-1194_C21A_sense 1171 GACAAAGGUGGAUACAUGAGA 50NM_025225.2_1176-1197_G21A_sense 1174 AAAGGUGGAUACAUGAGCAAA 51NM_025225.2_1180-1201_sense 1178 GUGGAUACAUGAGCAAGAUUU 52NM_025225.2_1181-1202_G21A_sense 1179 UGGAUACAUGAGCAAGAUUUA 53NM_025225.2_1184-1205_sense 1182 AUACAUGAGCAAGAUUUGCAA 54NM_025225.2_1191-1212_sense 1189 AGCAAGAUUUGCAACUUGCUA 55NM_025225.2_1193-1214_C21A_sense 1191 CAAGAUUUGCAACUUGCUACA 56NM_025225.2_1196-1217_sense 1194 GAUUUGCAACUUGCUACCCAU 57NM_025225.2_1200-1221_G21A_sense 1198 UGCAACUUGCUACCCAUUAGA 58NM_025225.2_1203-1224_sense 1201 AACUUGCUACCCAUUAGGAUA 59NM_025225.2_1266-1287_sense 1264 GCCAUUGCGAUUGUCCAGAGA 60NM_025225.2_1274-1295_C21A_sense 1272 GAUUGUCCAGAGACUGGUGAA 61NM_025225.2_1288-1309_sense 1286 UGGUGACAUGGCUUCCAGAUA 62NM_025225.2_1302-1323_C21A_sense 1300 CCAGAUAUGCCCGACGAUGUA 63NM_025225.2_1325-1346_C21A_sense 1323 GUGGUUGCAGUGGGUGACCUA 64NM_025225.2_1389-1410_C21A_sense 1387 AGGUCCCAAAUGCCAGUGAGA 65NM_025225.2_1621-1642_sense 1619 UCACUUGAGGAGGCGAGUCUA 66NM_025225.2_1636-1657_sense 1634 AGUCUAGCAGAUUCUUUCAGA 67NM_025225.2_1646-1667_G21A_sense 1644 AUUCUUUCAGAGGUGCUAAAA 68NM_025225.2_1647-1668_sense 1645 UUCUUUCAGAGGUGCUAAAGU 69NM_025225.2_1658-1679_sense 1656 GUGCUAAAGUUUCCCAUCUUU 70NM_025225.2_1669-1690_C21A_sense 1667 UCCCAUCUUUGUGCAGCUACA 71NM_025225.2_1713-1734_C21A_sense 1711 CUGCCUGUGACGUGGAGGAUA 72NM_025225.2_1718-1739_C21A_sense 1716 UGUGACGUGGAGGAUCCCAGA 73NM_025225.2_1740-1761_sense 1738 UCUGAGCUGAGUUGGUUUUAU 74NM_025225.2_1741-1762_G21A_sense 1739 CUGAGCUGAGUUGGUUUUAUA 75NM_025225.2_1749-1770_sense 1747 AGUUGGUUUUAUGAAAAGCUA 76NM_025225.2_1751-1772_G21A_sense 1749 UUGGUUUUAUGAAAAGCUAGA 77NM_025225.2_1753-1774_sense 1751 GGUUUUAUGAAAAGCUAGGAA 78NM_025225.2_1754-1775_G21A_sense 1752 GUUUUAUGAAAAGCUAGGAAA 79NM_025225.2_1755-1776_C21A_sense 1753 UUUUAUGAAAAGCUAGGAAGA 80NM_025225.2_1758-1779_C21A_sense 1756 UAUGAAAAGCUAGGAAGCAAA 81NM_025225.2_1827-1848_sense 1825 CGUUAAUUCAGCUGGUUGGGA 82NM_025225.2_1828-1849_sense 1826 GUUAAUUCAGCUGGUUGGGAA 83NM_025225.2_1836-1857_C21A_sense 1834 AGCUGGUUGGGAAAUGACACA 84NM_025225.2_1900-1921_sense 1898 CCUAUUAAUGGUCAGACUGUU 85NM_025225.2_1901-1922_C21A_sense 1899 CUAUUAAUGGUCAGACUGUUA 86NM_025225.2_1984-2005_G21A_sense 1982 GCUGGCCCAUGUGUGAUCUUA 87NM_025225.2_1986-2007_G21A_sense 1984 UGGCCCAUGUGUGAUCUUGUA 88NM_025225.2_2190-2211_sense 2188 CCUAACUAAAAUAAUGUUUAA 89NM_025225.2_2243-2264_sense 2241 UUACCUGUUGAAUUUUGUAUU 90NM_025225.2_2245-2266_sense 2243 ACCUGUUGAAUUUUGUAUUAU 91NM_025225.2_2258-2279_G21A_sense 2256 UGUAUUAUGUGAAUCAGUGAA 92NM_025225.2_2263-2284_sense 2261 UAUGUGAAUCAGUGAGAUGUU 93NM_025225.2_2278-2299_sense 2276 GAUGUUAGUAGAAUAAGCCUU 94NM_025225.2_2279-2300_sense 2277 AUGUUAGUAGAAUAAGCCUUA 95NM_054088.3_3032-3053_G21A_sense 3030 UGGAGCAACAGUGUCUAGAUA 96NM_054088.3_3106-3127_G21A_sense 3104 CUUUUGGAGGCAGCUAGGAAA 97NM_054088.3_3226-3247_sense 3224 AAGACAAUGAUUUGGUGUUUA 98NM_054088.3_3228-3249_sense 3226 GACAAUGAUUUGGUGUUUAGA 99NM_054088.3_3230-3251_sense 3228 CAAUGAUUUGGUGUUUAGAAA 100NM_054088.3_3447-3468_sense 3445 UGCCAGAUAACUUAUUACUUU 101NM_054088.3_3473-3494_sense 3471 ACACCUUUGGCUCUUACUAAU 102NM_054088.3_3629-3650_sense 3627 CUGGCUCCAAAUCUUUGUAUA 103NM_054088.3_3630-3651_G21A_sense 3628 UGGCUCCAAAUCUUUGUAUAA 104NM_054088.3_3635-3656_C21A_sense 3633 CCAAAUCUUUGUAUAGUCAUA 105NM_054088.3_3986-4007_sense 3984 AGAGACAAAGUGUCUAGGCUA 106NM_054088.3_3993-4014_sense 3991 AAGUGUCUAGGCUACACAGAA 107NM_054088.3_4283-4304_G21A_sense 4281 AGAAACUUCUGCCUUGCUUUA 108NM_054088.3_4540-4561_C21A_sense 4538 GAAGGAUUGAAUGGAUACACA 109NM_054088.3_4543-4564_sense 4541 GGAUUGAAUGGAUACACCAAA 110 SEQ TargetSite ID Other in GenBank Oligo Name Antisense Sequence (5′-3′) NO SetRef. No. NM_025225.2_219-240_C21A_sense UUGGUAGAAGCCCAGGAAGCCGC 111 hcmr217-239 NM_054088.3_250-271_sense UCCAUGAGGAUCUCCAUUAUACG 112 mr 248-270NM_025225.2_388-409_C21A_sense UACUCCUGGCCUUCCGCACAAGA 113 hc 386-408NM_025225.2_396-417_sense AAUGUUCCGACUCCUGGCCUUCC 114 hc 394-416NM_025225.2_397-418_G21A_senseense UAAUGUUCCGACUCCUGGCCUUC 115 hc395-417 NM_054088.3_443-464_senseense UUUGGAAUGGAACUCAGACACCA 116 mr441-463 NM_054088.3_469-490_G21A_senseense UACACCAGGGCAUCCACGACUUC 117mr 467-489 NM_025225.2_549-570_sense AAAGUCAGACACCAGAACGUUUU 118 hc547-569 NM_025225.2_562-583_G21A_sense UGUCUUUGGACCGAAAGUCAGAC 119 hc560-582 NM_025225.2_569-590_sense ACGACUUCGUCUUUGGACCGAAA 120 hc 567-589NM_025225.2_570-591_G21A_sense UACGACUUCGUCUUUGGACCGAA 121 hc 568-590NM_025225.2_579-600_G21A_sense UAAGGCAUCCACGACUUCGUCUU 122 hc 577-599NM_025225.2_596-617_sense AUGAAGCAGGAACAUACCAAGGC 123 hcmr 594-616NM_025225.2_630-651_C21A_sense UAAGGAAGGAGGGAUAAGGCCAC 124 hcmr 628-650NM_025225.2_674-695_C21A_sense UGUACGUUGUCACUCACUCCUCC 125 hc 672-694NM_025225.2_678-699_C21A_sense UAAGGGUACGUUGUCACUCACUC 126 hc 676-698NM_025225.2_701-722_C21A_sense UUGAUGGUUGUUUUGGCAUCAAU 127 hc 699-721NM_025225.2_746-767_sense UUGACUUUAGGGCAGAUGUCGUA 128 hc 744-766NM_054088.3_770-791_C21A_sense UUCCAGGUACCCUUGAUAGCACA 129 mr 768-790NM_025225.2_771-792_C21A_sense UUCCACAUGAAGAAAGUUCGUGG 130 hc 769-791NM_025225.2_817-838_C21A_sense UAAGGUAGAGGUUCCCUGUGCAG 131 hc 815-837NM_025225.2_871-892_C21A_sense UAAGGCAUAUCUCUCCCAGCACC 132 hc 869-891NM_025225.2_874-895_G21A_sense UUCGAAGGCAUAUCUCUCCCAGC 133 hc 872-894NM_025225.2_878-899_sense UAUCCUCGAAGGCAUAUCUCUCC 134 hc 876-898NM_025225.2_882-903_G21A_sense UAAAUAUCCUCGAAGGCAUAUCU 135 hc 880-902NM_025225.2_885-906_sense AUCCAAAUAUCCUCGAAGGCAUA 136 hc 883-905NM_025225.2_908-929_sense UUCUCUUCCAAGAACCUGAAUGC 137 hc 906-928NM_025225.2_964-985_C21A_sense UAUCCAUCCCUUCUGAGGAUGAC 138 hc 962-984NM_025225.2_1100-1121_sense AUGCUCUCAUCCCAGGGCAGGAU 139 hc 1098-1120NM_054088.3_1163-1184_G21A_sense UAUUCGGGCACAAACCUGGGAUG 140 mr1161-1183 NM_054088.3_1165-1186_C21A_sense UUCAUUCGGGCACAAACCUGGGA 141mr 1163-1185 NM_025225.2_1173-1194_C21A_sense UCUCAUGUAUCCACCUUUGUCUU142 hc 1171-1193 NM_025225.2_1176-1197_G21A_senseUUUGCUCAUGUAUCCACCUUUGU 143 hc 1174-1196 NM_025225.2_1180-1201_senseAAAUCUUGCUCAUGUAUCCACCU 144 hc 1178-1200NM_025225.2_1181-1202_G21A_sense UAAAUCUUGCUCAUGUAUCCACC 145 hc1179-1201 NM_025225.2_1184-1205_sense UUGCAAAUCUUGCUCAUGUAUCC 146 hc1182-1204 NM_025225.2_1191-1212_sense UAGCAAGUUGCAAAUCUUGCUCA 147 hc1189-1211 NM_025225.2_1193-1214_C21A_sense UGUAGCAAGUUGCAAAUCUUGCU 148hc 1191-1213 NM_025225.2_1196-1217_sense AUGGGUAGCAAGUUGCAAAUCUU 149 hc1194-1216 NM_025225.2_1200-1221_G21A_sense UCUAAUGGGUAGCAAGUUGCAAA 150hc 1198-1220 NM_025225.2_1203-1224_sense UAUCCUAAUGGGUAGCAAGUUGC 151 hc1201-1223 NM_025225.2_1266-1287_sense UCUCUGGACAAUCGCAAUGGCAG 152 hc1264-1286 NM_025225.2_1274-1295_C21A_sense UUCACCAGUCUCUGGACAAUCGC 153hc 1272-1294 NM_025225.2_1288-1309_sense UAUCUGGAAGCCAUGUCACCAGU 154 hc1286-1308 NM_025225.2_1302-1323_C21A_sense UACAUCGUCGGGCAUAUCUGGAA 155hc 1300-1322 NM_025225.2_1325-1346_C21A_sense UAGGUCACCCACUGCAACCACAG156 hc 1323-1345 NM_025225.2_1389-1410_C21A_senseUCUCACUGGCAUUUGGGACCUGG 157 hc 1387-1409 NM_025225.2_1621-1642_senseUAGACUCGCCUCCUCAAGUGACU 158 hc 1619-1641 NM_025225.2_1636-1657_senseUCUGAAAGAAUCUGCUAGACUCG 159 hc 1634-1656NM_025225.2_1646-1667_G21A_sense UUUUAGCACCUCUGAAAGAAUCU 160 hc1644-1666 NM_025225.2_1647-1668_sense ACUUUAGCACCUCUGAAAGAAUC 161 hc1645-1667 NM_025225.2_1658-1679_sense AAAGAUGGGAAACUUUAGCACCU 162 hc1656-1678 NM_025225.2_1669-1690_C21A_sense UGUAGCUGCACAAAGAUGGGAAA 163hc 1667-1689 NM_025225.2_1713-1734_C21A_sense UAUCCUCCACGUCACAGGCAGGG164 hc 1711-1733 NM_025225.2_1718-1739_C21A_senseUCUGGGAUCCUCCACGUCACAGG 165 hc 1716-1738 NM_025225.2_1740-1761_senseAUAAAACCAACUCAGCUCAGAGG 166 hc 1738-1760NM_025225.2_1741-1762_G21A_sense UAUAAAACCAACUCAGCUCAGAG 167 hc1739-1761 NM_025225.2_1749-1770_sense UAGCUUUUCAUAAAACCAACUCA 168 hc1747-1769 NM_025225.2_1751-1772_G21A_sense UCUAGCUUUUCAUAAAACCAACU 169hc 1749-1771 NM_025225.2_1753-1774_sense UUCCUAGCUUUUCAUAAAACCAA 170 hc1751-1773 NM_025225.2_1754-1775_G21A_sense UUUCCUAGCUUUUCAUAAAACCA 171hc 1752-1774 NM_025225.2_1755-1776_C21A_sense UCUUCCUAGCUUUUCAUAAAACC172 hc 1753-1775 NM_025225.2_1758-1779_C21A_senseUUUGCUUCCUAGCUUUUCAUAAA 173 hc 1756-1778 NM_025225.2_1827-1848_senseUCCCAACCAGCUGAAUUAACGCA 174 hc 1825-1847 NM_025225.2_1828-1849_senseUUCCCAACCAGCUGAAUUAACGC 175 hc 1826-1848NM_025225.2_1836-1857_C21A_sense UGUGUCAUUUCCCAACCAGCUGA 176 hc1834-1856 NM_025225.2_1900-1921_sense AACAGUCUGACCAUUAAUAGGGC 177 hc1898-1920 NM_025225.2_1901-1922_C21A_sense UAACAGUCUGACCAUUAAUAGGG 178hc 1899-1921 NM_025225.2_1984-2005_G21A_sense UAAGAUCACACAUGGGCCAGCCU179 hc 1982-2004 NM_025225.2_1986-2007_G21A_senseUACAAGAUCACACAUGGGCCAGC 180 hc 1984-2006 NM_025225.2_2190-2211_senseUUAAACAUUAUUUUAGUUAGGUG 181 hc 2188-2210 NM_025225.2_2243-2264_senseAAUACAAAAUUCAACAGGUAACA 182 hc 2241-2263 NM_025225.2_2245-2266_senseAUAAUACAAAAUUCAACAGGUAA 183 hc 2243-2265NM_025225.2_2258-2279_G21A_sense UUCACUGAUUCACAUAAUACAAA 184 hc2256-2278 NM_025225.2_2263-2284_sense AACAUCUCACUGAUUCACAUAAU 185 hc2261-2283 NM_025225.2_2278-2299_sense AAGGCUUAUUCUACUAACAUCUC 186 hc2276-2298 NM_025225.2_2279-2300_sense UAAGGCUUAUUCUACUAACAUCU 187 hc2277-2299 NM_054088.3_3032-3053_G21A_sense UAUCUAGACACUGUUGCUCCAGA 188mr 3030-3052 NM_054088.3_3106-3127_G21A_sense UUUCCUAGCUGCCUCCAAAAGUA189 mr 3104-3126 NM_054088.3_3226-3247_sense UAAACACCAAAUCAUUGUCUUUG 190mr 3224-3246 NM_054088.3_3228-3249_sense UCUAAACACCAAAUCAUUGUCUU 191 mr3226-3248 NM_054088.3_3230-3251_sense UUUCUAAACACCAAAUCAUUGUC 192 mr3228-3250 NM_054088.3_3447-3468_sense AAAGUAAUAAGUUAUCUGGCAGG 193 mr3445-3467 NM_054088.3_3473-3494_sense AUUAGUAAGAGCCAAAGGUGUCC 194 mr3471-3493 NM_054088.3_3629-3650_sense UAUACAAAGAUUUGGAGCCAGUG 195 mr3627-3649 NM_054088.3_3630-3651_G21A_sense UUAUACAAAGAUUUGGAGCCAGU 196mr 3628-3650 NM_054088.3_3635-3656_C21A_sense UAUGACUAUACAAAGAUUUGGAG197 mr 3633-3655 NM_054088.3_3986-4007_sense UAGCCUAGACACUUUGUCUCUAG 198mr 3984-4006 NM_054088.3_3993-4014_sense UUCUGUGUAGCCUAGACACUUUG 199 mr3991-4013 NM_054088.3_4283-4304_G21A_sense UAAAGCAAGGCAGAAGUUUCUAC 200mr 4281-4303 NM_054088.3_4540-4561_C21A_sense UGUGUAUCCAUUCAAUCCUUCUG201 mr 4538-4560 NM_054088.3_4543-4564_sense UUUGGUGUAUCCAUUCAAUCCUU 202mr 4541-4563

Example 2. iRNA Synthesis Source of Reagents

Where the source of a reagent is not specifically given herein, suchreagent can be obtained from any supplier of reagents for molecularbiology at a quality/purity standard for application in molecularbiology.

Transcripts

siRNA Design

A set of iRNAs targeting the human PNPLA3 (human: NCBI refseqIDNM_025225; NCBI GeneID: 80339), as well as toxicology-species PNPLA3orthologs (cynomolgus monkey: XM_005567051; mouse: NM_054088; rat:XM_006242109) were designed using custom R and Python scripts. The humanPNPLA3 REFSEQ mRNA has a length of 2805 bases. The rationale and methodfor the set of siRNA designs is as follows: the predicted efficacy forevery potential 19mer iRNA from position 174 through position 2805 (thecoding region and 3′ UTR) was determined with a linear model derived thedirect measure of mRNA knockdown from more than 20,000 distinct iRNAdesigns targeting a large number of vertebrate genes. Subsets of thePNPLA3 iRNAs were designed with perfect or near-perfect matches betweenhuman and cynomolgus monkey. A further subset was designed with perfector near-perfect matches to mouse and rat PNPLA3 orthologs. A furthersubset was designed with perfect or near-perfect matches to human,cynomolgus monkey, mouse, and rat PNPLA3 orthologs. For each strand ofthe iRNA, a custom Python script was used in a brute force search tomeasure the number and positions of mismatches between the iRNA and allpotential alignments in the target species transcriptome. Extra weightwas given to mismatches in the seed region, e.g., positions 2-9 of theantisense oligonucleotide, as well the cleavage site of the siRNA, e.g.,positions 10-11 of the antisense oligonucleotide. The relative weight ofthe mismatches was 2.8, 1.2 and 1 for seed mismatches, cleavage site,and other positions up through antisense position 19, respectively.Mismatches in the first position were ignored. A specificity score wascalculated for each strand by summing the value of each weightedmismatch. Preference was given to iRNAs whose antisense score in humanand cynomolgus monkey was >=3.0 and predicted efficacy was >=70%knockdown of the PNPLA3 transcript.

A detailed list of the unmodified PNPLA3 sense and antisense strandsequences is shown in Table 4. A detailed list of the modified PNPLA3sense and antisense strand sequences is shown in Table 5.

In Vitro Screening

Cell Culture and Transfections

Hep3b cells were transfected by adding 4.9 μl of Opti-MEM plus 0.1 μl ofLipofectamine RNAiMax per well (Invitrogen, Carlsbad Calif. cat#13778-150) to 5 μl of iRNA duplexes per well into a 384-well plate andincubated at room temperature for 15 minutes. Firty μl of EMEMcontaining ˜5×10³ cells were then added to the iRNA mixture. Cells wereincubated for 24 hours prior to RNA purification. Single doseexperiments were performed at 20 nM final duplex concentration.

Total RNA Isolation Using DYNABEADS mRNA Isolation Kit

RNA was isolated using an automated protocol on a BioTek-EL406 platformusing DYNABEADs (Invitrogen, cat#61012). Briefly, 50 μl of Lysis/BindingBuffer and 25 μl of lysis buffer containing 3 μl of magnetic beads wereadded to the plate with cells. Plates were incubated on anelectromagnetic shaker for 10 minutes at room temperature and thenmagnetic beads were captured and the supernatant was removed. Bead-boundRNA was then washed 2 times with 150 μl Wash Buffer A and once with WashBuffer B. Beads were then washed with 150 μl Elution Buffer, re-capturedand supernatant removed.

cDNA Synthesis Using ABI High Capacity cDNA Reverse Transcription Kit(Applied Biosystems, Foster City, Calif., Cat #4368813)

Ten μl of a master mix containing 1 μl 10× Buffer, 0.4 μl 25× dNTPs, 1μl 10× Random primers, 0.5 μl Reverse Transcriptase, 0.5 μl RNaseinhibitor and 6.6 μl of H₂O per reaction was added to RNA isolatedabove. Plates were sealed, mixed, and incubated on an electromagneticshaker for 10 minutes at room temperature, followed by 2 h 37° C.

Real Time PCR

Two μl of cDNA were added to a master mix containing 0.5 μl of GAPDHTaqMan Probe (Hs99999905), 0.5 μl PNPLA3 probe (Hs00228747_ml) and 5 μlLightcycler 480 probe master mix (Roche Cat #04887301001) per well in a384 well plates (Roche cat #04887301001). Real time PCR was done in aLightCycler480 Real Time PCR system (Roche). Each duplex was tested infour independent transfections.

To calculate relative fold change, real time data were analyzed usingthe ΔΔCt method and normalized to assays performed with cellstransfected with 20 nM AD-1955, or mock transfected cells. The resultsfrom the assays are shown in Table 6.

TABLE 4 Unmodified Sense and Antisense Strand Sequences of PNPLA3 RNAiAgents SEQ ID Antisense lex Name Sense Oligo Name Sense Sequence (5′-3′)NO Oligo Name AD-68792.1 A-138374.1 GGGGGCGGGGCUGACGUCA 203 A-138375.1AD-68793.1 A-138376.1 ACGUCGCGCUGGGAAUGCA 204 A-138377.1 AD-68794.1A-138378.1 GGAAUGCCCUGGCCGAGAA 205 A-138379.1 AD-68795.1 A-138380.1UGGCCGAGACACUGAGGCA 206 A-138381.1 AD-68796.1 A-138382.1UGAGGCAGGGUAGAGAGCA 207 A-138383.1 AD-68797.1 A-138384.1AGAGAGCGCUUGCGGGCGA 208 A-138385.1 AD-68798.1 A-138386.1CGGGCGCCGGGCGGAGCUA 209 A-138387.1 AD-68799.1 A-138388.1GCGGAGCUGCUGCGGAUCA 210 A-138389.1 AD-68800.1 A-138390.1UGCGGAUCAGGACCCGAGA 211 A-138391.1 AD-68801.1 A-138392.1ACCCGAGCCGAUUCCCGAU 212 A-138393.1 AD-68802.1 A-138394.1UUCCCGAUCCCGACCCAGA 213 A-138395.1 AD-68803.1 A-138396.1ACCCAGAUCCUAACCCGCA 214 A-138397.1 AD-68804.1 A-138398.1UAACCCGCGCCCCCGCCCA 215 A-138399.1 AD-68805.1 A-138400.1CCGCCCCGCCGCCGCCGCA 216 A-138401.1 AD-68806.1 A-138402.1CGCCGCCAUGUACGACGCA 217 A-138403.1 AD-68807.1 A-138404.1UACGACGCAGAGCGCGGCU 218 A-138405.1 AD-68808.1 A-138406.1CGCGGCUGGAGCUUGUCCU 219 A-138407.1 AD-68809.1 A-138408.1AGCUUGUCCUUCGCGGGCU 220 A-138409.1 AD-68810.1 A-138410.1CGCGGGCUGCGGCUUCCUA 221 A-138411.1 AD-68811.1 A-138412.1UUCCUGGGCUUCUACCACA 222 A-138413.1 AD-68812.1 A-138414.1UUCUACCACGUCGGGGCGA 223 A-138415.1 AD-68813.1 A-138416.1CGGGGCGACCCGCUGCCUA 224 A-138417.1 AD-68814.1 A-138418.1UGCCUGAGCGAGCACGCCA 225 A-138419.1 AD-68815.1 A-138420.1AGCACGCCCCGCACCUCCU 226 A-138421.1 AD-68816.1 A-138422.1ACCUCCUCCGCGACGCGCA 227 A-138423.1 AD-68817.1 A-138424.1GCGACGCGCGCAUGUUGUU 228 A-138425.1 AD-68818.1 A-138426.1UGUUGUUCGGCGCUUCGGA 229 A-138427.1 AD-68819.1 A-138428.1CUUCGGCCGGGGCGUUGCA 230 A-138429.1 AD-68820.1 A-138430.1GGCGUUGCACUGCGUCGGA 231 A-138431.1 AD-68821.1 A-138432.1UGCGUCGGCGUCCUCUCCA 232 A-138433.1 AD-68822.1 A-138434.1UCUCCGGUAUCCCGCUGGA 233 A-138435.1 AD-68823.1 A-138436.1UCCCGCUGGAGCAGACUCU 234 A-138437.1 AD-68824.1 A-138438.1CAGACUCUGCAGGUCCUCU 235 A-138439.1 AD-68825.1 A-138440.1UCCUCUCAGAUCUUGUGCA 236 A-138441.1 AD-68826.1 A-138442.1UCUUGUGCGGAAGGCCAGA 237 A-138443.1 AD-68827.1 A-138444.1AAGGCCAGGAGUCGGAACA 238 A-138445.1 AD-68828.1 A-138446.1CGGAACAUUGGCAUCUUCA 239 A-138447.1 AD-68829.1 A-138448.1GCAUCUUCCAUCCAUCCUU 240 A-138449.1 AD-68830.1 A-138450.1CCAUCCUUCAACUUAAGCA 241 A-138451.1 AD-68831.1 A-138452.1UUAAGCAAGUUCCUCCGAA 242 A-138453.1 AD-68832.1 A-138454.1CCUCCGACAGGGUCUCUGA 243 A-138455.1 AD-68833.1 A-138456.1UCUCUGCAAAUGCCUCCCA 244 A-138457.1 AD-68834.1 A-138458.1UGCCUCCCGGCCAAUGUCA 245 A-138459.1 AD-68835.1 A-138460.1AAUGUCCACCAGCUCAUCU 246 A-138461.1 AD-68836.1 A-138462.1AGCUCAUCUCCGGCAAAAU 247 A-138463.1 AD-68837.1 A-138464.1CGGCAAAAUAGGCAUCUCU 248 A-138465.1 AD-68838.1 A-138466.1AUCUCUCUUACCAGAGUGU 249 A-138467.1 AD-68839.1 A-138468.1ACCAGAGUGUCUGAUGGGA 250 A-138469.1 AD-68840.1 A-138470.1AUGGGGAAAACGUUCUGGU 251 A-138471.1 AD-68841.1 A-138472.1ACGUUCUGGUGUCUGACUU 252 A-138473.1 AD-68842.1 A-138474.1UCUGACUUUCGGUCCAAAG 253 A-138475.1 AD-68843.1 A-138476.1UCCAAAGACGAAGUCGUGA 254 A-138477.1 AD-68844.1 A-138478.1AAGUCGUGGAUGCCUUGGU 255 A-138479.1 AD-68845.1 A-138480.1CCUUGGUAUGUUCCUGCUU 256 A-138481.1 AD-68846.1 A-138482.1UCCUGCUUCAUCCCCUUCU 257 A-138483.1 AD-68847.1 A-138484.1UCCCCUUCUACAGUGGCCU 258 A-138485.1 AD-68848.1 A-138486.1AGUGGCCUUAUCCCUCCUU 259 A-138487.1 AD-68849.1 A-138488.1CCUCCUUCCUUCAGAGGCA 260 A-138489.1 AD-68850.1 A-138490.1UCAGAGGCGUGCGAUAUGU 261 A-138491.1 AD-68851.1 A-138492.1GAUAUGUGGAUGGAGGAGU 262 A-138493.1 AD-68852.1 A-138494.1GAGGAGUGAGUGACAACGU 263 A-138495.1 AD-68853.1 A-138496.1UGACAACGUACCCUUCAUU 264 A-138497.1 AD-68854.1 A-138498.1CCUUCAUUGAUGCCAAAAC 265 A-138499.1 AD-68855.1 A-138500.1UGCCAAAACAACCAUCACA 266 A-138501.1 AD-68856.1 A-138502.1AUCACCGUGUCCCCCUUCU 267 A-138503.1 AD-68857.1 A-138504.1UCCCCCUUCUAUGGGGAGU 268 A-138505.1 AD-68858.1 A-138506.1UGGGGAGUACGACAUCUGA 269 A-138507.1 AD-68859.1 A-138508.1AUCUGCCCUAAAGUCAAGU 270 A-138509.1 AD-68860.1 A-138510.1AGUCAAGUCCACGAACUUU 271 A-138511.1 AD-68861.1 A-138512.1ACGAACUUUCUUCAUGUGA 272 A-138513.1 AD-68862.1 A-138514.1UUCAUGUGGACAUCACCAA 273 A-138515.1 AD-68863.1 A-138516.1UCACCAAGCUCAGUCUACA 274 A-138517.1 AD-68864.1 A-138518.1AGUCUACGCCUCUGCACAA 275 A-138519.1 AD-68865.1 A-138520.1CUGCACAGGGAACCUCUAA 276 A-138521.1 AD-68866.1 A-138522.1AACCUCUACCUUCUCUCGA 277 A-138523.1 AD-68867.1 A-138524.1UCUCGAGAGCUUUUGUCCA 278 A-138525.1 AD-68868.1 A-138526.1UUUGUCCCCCCGGAUCUCA 279 A-138527.1 AD-68869.1 A-138528.1CCGGAUCUCAAGGUGCUGA 280 A-138529.1 AD-68870.1 A-138530.1UGCUGGGAGAGAUAUGCCU 281 A-138531.1 AD-68871.1 A-138532.1AGAUAUGCCUUCGAGGAUA 282 A-138533.1 AD-68872.1 A-138534.1AGGAUAUUUGGAUGCAUUA 283 A-138535.1 AD-68873.1 A-138536.1AUGCAUUCAGGUUCUUGGA 284 A-138537.1 AD-68874.1 A-138538.1UUCUUGGAAGAGAAGGGCA 285 A-138539.1 AD-68875.1 A-138540.1GAGAAGGGCAUCUGCAACA 286 A-138541.1 AD-68876.1 A-138542.1UGCAACAGGCCCCAGCCAA 287 A-138543.1 AD-68877.1 A-138544.1CAGCCAGGCCUGAAGUCAU 288 A-138545.1 AD-68878.1 A-138546.1GAAGUCAUCCUCAGAAGGA 289 A-138547.1 AD-68879.1 A-138548.1UCAGAAGGGAUGGAUCCUA 290 A-138549.1 AD-68880.1 A-138550.1UGGAUCCUGAGGUCGCCAU 291 A-138551.1 AD-68881.1 A-138552.1CGCCAUGCCCAGCUGGGCA 292 A-138553.1 AD-68882.1 A-138554.1CAGCUGGGCAAACAUGAGU 293 A-138555.1 AD-68883.1 A-138556.1CAUGAGUCUGGAUUCUUCA 294 A-138557.1 AD-68884.1 A-138558.1UUCUUCCCCGGAGUCGGCU 295 A-138559.1 AD-68885.1 A-138560.1AGUCGGCUGCCUUGGCUGU 296 A-138561.1 AD-68905.1 A-138562.1UUGGCUGUGAGGCUGGAGA 297 A-138563.1 AD-68906.1 A-138564.1AGGCUGGAGGGAGAUGAGA 298 A-138565.1 AD-68907.1 A-138566.1AUGAGCUGCUAGACCACCU 299 A-138567.1 AD-68908.1 A-138568.1UAGACCACCUGCGUCUCAA 300 A-138569.1 AD-68909.1 A-138570.1CGUCUCAGCAUCCUGCCCU 301 A-138571.1 AD-68910.1 A-138572.1CCUGCCCUGGGAUGAGAGA 302 A-138573.1 AD-68911.1 A-138574.1AUGAGAGCAUCCUGGACAA 303 A-138575.1 AD-68912.1 A-138576.1UGGACACCCUCUCGCCCAA 304 A-138577.1 AD-68913.1 A-138578.1UCGCCCAGGCUCGCUACAA 305 A-138579.1 AD-68914.1 A-138580.1UCGCUACAGCACUGAGUGA 306 A-138581.1 AD-68915.1 A-138582.1CUGAGUGAAGAAAUGAAAG 307 A-138583.1 AD-68916.1 A-138584.1AUGAAAGACAAAGGUGGAU 308 A-138585.1 AD-68917.1 A-138586.1AAGGUGGAUACAUGAGCAA 309 A-138587.1 AD-68918.1 A-138588.1AUGAGCAAGAUUUGCAACU 310 A-138589.1 AD-68919.1 A-138590.1UUGCAACUUGCUACCCAUU 311 A-138591.1 AD-68920.1 A-138592.1ACCCAUUAGGAUAAUGUCU 312 A-138593.1 AD-68921.1 A-138594.1UAAUGUCUUAUGUAAUGCU 313 A-138595.1 AD-68922.1 A-138596.1UAAUGCUGCCCUGUACCCU 314 A-138597.1 AD-68923.1 A-138598.1UGUACCCUGCCUGUGGAAU 315 A-138599.1 AD-68924.1 A-138600.1UGUGGAAUCUGCCAUUGCA 316 A-138601.1 AD-68925.1 A-138602.1UGCCAUUGCGAUUGUCCAA 317 A-138603.1 AD-68926.1 A-138604.1UUGUCCAGAGACUGGUGAA 318 A-138605.1 AD-68927.1 A-138606.1GGUGACAUGGCUUCCAGAU 319 A-138607.1 AD-68928.1 A-138608.1UUCCAGAUAUGCCCGACGA 320 A-138609.1 AD-68929.1 A-138610.1UGCCCGACGAUGUCCUGUA 321 A-138611.1 AD-68930.1 A-138612.1UCCUGUGGUUGCAGUGGGU 322 A-138613.1 AD-68931.1 A-138614.1AGUGGGUGACCUCACAGGU 323 A-138615.1 AD-68932.1 A-138616.1UCACAGGUGUUCACUCGAA 324 A-138617.1 AD-68933.1 A-138618.1UUCACUCGAGUGCUGAUGU 325 A-138619.1 AD-68934.1 A-138620.1UGAUGUGUCUGCUCCCCGA 326 A-138621.1 AD-68935.1 A-138622.1UGCUCCCCGCCUCCAGGUA 327 A-138623.1 AD-68936.1 A-138624.1CCAGGUCCCAAAUGCCAGU 328 A-138625.1 AD-68937.1 A-138626.1AAUGCCAGUGAGCAGCCAA 329 A-138627.1 AD-68938.1 A-138628.1AGCCAACAGGCCUCCCCAU 330 A-138629.1 AD-68939.1 A-138630.1CCUCCCCAUGCACACCUGA 331 A-138631.1 AD-68940.1 A-138632.1CACCUGAGCAGGACUGGCA 332 A-138633.1 AD-68941.1 A-138634.1GACUGGCCCUGCUGGACUA 333 A-138635.1 AD-68942.1 A-138636.1UGCUGGACUCCCUGCUCCA 334 A-138637.1 AD-68943.1 A-138638.1CUGCUCCCCCAAGGGCUGU 335 A-138639.1 AD-68944.1 A-138640.1AGGGCUGUCCAGCAGAGAA 336 A-138641.1 AD-68945.1 A-138642.1CAGAGACCAAAGCAGAGGA 337 A-138643.1 AD-68946.1 A-138644.1AGCAGAGGCCACCCCGCGA 338 A-138645.1 AD-68947.1 A-138646.1CCGCGGUCCAUCCUCAGGU 339 A-138647.1 AD-68948.1 A-138648.1CCUCAGGUCCAGCCUGAAA 340 A-138649.1 AD-68949.1 A-138650.1AGCCUGAACUUCUUCUUGA 341 A-138651.1 AD-68950.1 A-138652.1UUCUUGGGCAAUAAAGUAA 342 A-138653.1 AD-68951.1 A-138654.1UAAAGUACCUGCUGGUGCU 343 A-138655.1 AD-68952.1 A-138656.1CUGGUGCUGAGGGGCUCUA 344 A-138657.1 AD-68953.1 A-138658.1AGGGGCUCUCCACCUUUCA 345 A-138659.1 AD-68954.1 A-138660.1CCUUUCCCAGUUUUUCACU 346 A-138661.1 AD-68955.1 A-138662.1UUUUUCACUAGAGAAGAGU 347 A-138663.1 AD-68956.1 A-138664.1AAGAGUCUGUGAGUCACUU 348 A-138665.1 AD-68957.1 A-138666.1AGUCACUUGAGGAGGCGAA 349 A-138667.1 AD-68958.1 A-138668.1AGGAGGCGAGUCUAGCAGA 350 A-138669.1 AD-68959.1 A-138670.1AGCAGAUUCUUUCAGAGGU 351 A-138671.1 AD-68960.1 A-138672.1UUCAGAGGUGCUAAAGUUU 352 A-138673.1 AD-68961.1 A-138674.1UAAAGUUUCCCAUCUUUGU 353 A-138675.1 AD-68962.1 A-138676.1UCUUUGUGCAGCUACCUCA 354 A-138677.1 AD-68963.1 A-138678.1AGCUACCUCCGCAUUGCUA 355 A-138679.1 AD-68964.1 A-138680.1UUGCUGUGUAGUGACCCCU 356 A-138681.1 AD-68965.1 A-138682.1UGACCCCUGCCUGUGACGU 357 A-138683.1 AD-68966.1 A-138684.1UGUGACGUGGAGGAUCCCA 358 A-138685.1 AD-68967.1 A-138686.1AGGAUCCCAGCCUCUGAGA 359 A-138687.1 AD-68968.1 A-138688.1CUCUGAGCUGAGUUGGUUU 360 A-138689.1 AD-68969.1 A-138690.1UUGGUUUUAUGAAAAGCUA 361 A-138691.1 AD-68970.1 A-138692.1AAAAGCUAGGAAGCAACCU 362 A-138693.1 AD-68971.1 A-138694.1GAAGCAACCUUUCGCCUGU 363 A-138695.1 AD-68972.1 A-138696.1UCGCCUGUGCAGCGGUCCA 364 A-138697.1 AD-68973.1 A-138698.1CGGUCCAGCACUUAACUCU 365 A-138699.1 AD-68974.1 A-138700.1UUAACUCUAAUACAUCAGA 366 A-138701.1 AD-68975.1 A-138702.1UACAUCAGCAUGCGUUAAU 367 A-138703.1 AD-68976.1 A-138704.1CGUUAAUUCAGCUGGUUGA 368 A-138705.1 AD-68977.1 A-138706.1CUGGUUGGGAAAUGACACA 369 A-138707.1 AD-68978.1 A-138708.1AAUGACACCAGGAAGCCCA 370 A-138709.1 AD-68979.1 A-138710.1AAGCCCAGUGCAGAGGGUA 371 A-138711.1 AD-68980.1 A-138712.1AGAGGGUCCCUUACUGACU 372 A-138713.1 AD-68981.1 A-138714.1UUACUGACUGUUUCGUGGA 373 A-138715.1 AD-68982.1 A-138716.1UUCGUGGCCCUAUUAAUGA 374 A-138717.1 AD-68983.1 A-138718.1UUAAUGGUCAGACUGUUCA 375 A-138719.1 AD-68984.1 A-138720.1GACUGUUCCAGCAUGAGGU 376 A-138721.1 AD-68985.1 A-138722.1UGAGGUUCUUAGAAUGACA 377 A-138723.1 AD-68986.1 A-138724.1UAGAAUGACAGGUGUUUGA 378 A-138725.1 AD-68987.1 A-138726.1UGUUUGGAUGGGUGGGGGA 379 A-138727.1 AD-68988.1 A-138728.1UGGGGGCCUUGUGAUGGGA 380 A-138729.1 AD-68989.1 A-138730.1UGUGAUGGGGGGUAGGCUA 381 A-138731.1 AD-68990.1 A-138732.1UAGGCUGGCCCAUGUGUGA 382 A-138733.1 AD-68991.1 A-138734.1UGUGUGAUCUUGUGGGGUA 383 A-138735.1 AD-68992.1 A-138736.1UUGUGGGGUGGAGGGAAGA 384 A-138737.1 AD-68993.1 A-138738.1AGGGAAGAGAAUAGCAUGA 385 A-138739.1 AD-68994.1 A-138740.1UAGCAUGAUCCCACUUCCA 386 A-138741.1 AD-68995.1 A-138742.1ACUUCCCCAUGCUGUGGGA 387 A-138743.1 AD-68996.1 A-138744.1CUGUGGGAAGGGGUGCAGU 388 A-138745.1 AD-68997.1 A-138746.1GUGCAGUUCGUCCCCAAGA 389 A-138747.1 AD-68998.1 A-138748.1UCCCCAAGAACGACACUGA 390 A-138749.1 AD-69014.1 A-138750.1ACACUGCCUGUCAGGUGGU 391 A-138751.1 AD-69015.1 A-138752.1UCAGGUGGUCUGCAAAGAU 392 A-138753.1 AD-69016.1 A-138754.1UGCAAAGAUGAUAACCUUA 393 A-138755.1 AD-69017.1 A-138756.1AACCUUGACUACUAAAAAC 394 A-138757.1 AD-69018.1 A-138758.1UAAAAACGUCUCCAUGGCA 395 A-138759.1 AD-69019.1 A-138760.1CCAUGGCGGGGGUAACAAA 396 A-138761.1 AD-69020.1 A-138762.1GGUAACAAGAUGAUAAUCU 397 A-138763.1 AD-69021.1 A-138764.1UGAUAAUCUACUUAAUUUU 398 A-138765.1 AD-69022.1 A-138766.1UUAAUUUUAGAACACCUUU 399 A-138767.1 AD-69023.1 A-138768.1ACACCUUUUUCACCUAACU 400 A-138769.1 AD-69024.1 A-138770.1CCUAACUAAAAUAAUGUUU 401 A-138771.1 AD-69025.1 A-138772.1AUAAUGUUUAAAGAGUUUU 402 A-138773.1 AD-69026.1 A-138774.1GAGUUUUGUAUAAAAAUGU 403 A-138775.1 AD-69027.1 A-138776.1AAAAAUGUAAGGAAGCGUU 404 A-138777.1 AD-69028.1 A-138778.1GGAAGCGUUGUUACCUGUU 405 A-138779.1 AD-69029.1 A-138780.1UACCUGUUGAAUUUUGUAU 406 A-138781.1 AD-69030.1 A-138782.1UUGUAUUAUGUGAAUCAGU 407 A-138783.1 AD-69031.1 A-138784.1GAAUCAGUGAGAUGUUAGU 408 A-138785.1 AD-69032.1 A-138786.1AUGUUAGUAGAAUAAGCCU 409 A-138787.1 AD-69033.1 A-138788.1AUAAGCCUUAAAAAAAAAA 410 A-138789.1 AD-69034.1 A-138790.1AAAAAAAAAAAAAUCGGUU 411 A-138791.1 AD-69035.1 A-138792.1AAUCGGUUGGGUGCAGUGA 412 A-138793.1 AD-69036.1 A-138794.1UGCAGUGGCACACGGCUGU 413 A-138795.1 AD-69037.1 A-138796.1GGCUGUAAUCCCAGCACUU 414 A-138797.1 AD-69038.1 A-138798.1CAGCACUUUGGGAGGCCAA 415 A-138799.1 AD-69039.1 A-138800.1GAGGCCAAGGUUGGCAGAU 416 A-138801.1 AD-69040.1 A-138802.1UUGGCAGAUCACCUGAGGU 417 A-138803.1 AD-69041.1 A-138804.1CUGAGGUCAGGAGUUCAAA 418 A-138805.1 AD-69042.1 A-138806.1GAGUUCAAGACCAGUCUGA 419 A-138807.1 AD-69043.1 A-138808.1CAGUCUGGCCAACAUAGCA 420 A-138809.1 AD-69044.1 A-138810.1AACAUAGCAAAACCCUGUA 421 A-138811.1 AD-69045.1 A-138812.1CCCUGUCUCUACUAAAAAU 422 A-138813.1 AD-69046.1 A-138814.1CUAAAAAUACAAAAAUUAU 423 A-138815.1 AD-69047.1 A-138816.1AAAAUUAUCUGGGCAUGGU 424 A-138817.1 AD-69048.1 A-138818.1GGCAUGGUGGUGCAUGCCU 425 A-138819.1 AD-69049.1 A-138820.1CAUGCCUGUAAUCCCAGCU 426 A-138821.1 AD-69050.1 A-138822.1AAUCCCAGCUAUUCGGAAA 427 A-138823.1 AD-69051.1 A-138824.1UUCGGAAGGCUGAGGCAGA 428 A-138825.1 AD-69052.1 A-138826.1AGGCAGGAGAAUCACUUGA 429 A-138827.1 AD-69053.1 A-138828.1AUCACUUGAACCCAGGAGA 430 A-138829.1 AD-69054.1 A-138830.1CAGGAGGCGGAGGUUGCGA 431 A-138831.1 AD-69055.1 A-138832.1GUUGCGGUGAGCUGAGAUU 432 A-138833.1 AD-69056.1 A-138834.1CUGAGAUUGCACCAUUUCA 433 A-138835.1 AD-69057.1 A-138836.1CACCAUUUCAUUCCAGCCU 434 A-138837.1 AD-69058.1 A-138838.1CAGCCUGGGCAACAUGAGU 435 A-138839.1 AD-69059.1 A-138840.1AACAUGAGUGAAAGUCUGA 436 A-138841.1 AD-69060.1 A-138842.1AGUCUGACUCAAAAAAAAA 437 A-138843.1 AD-69061.1 A-138844.1AAAAAAAAAAAAUUUAAAA 438 A-138845.1 AD-69062.1 A-138846.1UUUAAAAAACAAAAUAAUA 439 A-138847.1 AD-69063.1 A-138848.1AAAAUAAUCUAGUGUGCAA 440 A-138849.1 AD-69064.1 A-138850.1GUGUGCAGGGCAUUCACCU 441 A-138851.1 AD-69065.1 A-138852.1CAUUCACCUCAGCCCCCCA 442 A-138853.1 AD-69066.1 A-138854.1CCCCCAGGCAGGAGCCAAA 443 A-138855.1 AD-69067.1 A-138856.1AGGAGCCAAGCACAGCAGA 444 A-138857.1 AD-69068.1 A-138858.1ACAGCAGGAGCUUCCGCCU 445 A-138859.1 AD-69069.1 A-138860.1UUCCGCCUCCUCUCCACUA 446 A-138861.1 AD-69070.1 A-138862.1UCCACUGGAGCACACAACU 447 A-138863.1 AD-69071.1 A-138864.1ACACAACUUGAACCUGGCU 448 A-138865.1 AD-69072.1 A-138866.1AACCUGGCUUAUUUUCUGA 449 A-138867.1 AD-69073.1 A-138868.1UUCUGCAGGGACCAGCCCA 450 A-138869.1 AD-69074.1 A-138870.1CCAGCCCCACAUGGUCAGU 451 A-138871.1 AD-69076.1 A-138874.1UUUCUCCCCAUGUGUGGCA 452 A-138875.1 AD-69077.1 A-138878.1AGAGAGUGUAGAAAUAAAG 453 A-138879.1 SEQ Nucleotide ID Start Site in Rangein lex Name Antisense Sequence (5′-3′) NO NM_025225.2 NM_025225.2AD-68792.1 UGACGUCAGCCCCGCCCCC 454 11 11-29 AD-68793.1UGCAUUCCCAGCGCGACGU 455 24 24-42 AD-68794.1 UUCUCGGCCAGGGCAUUCC 456 3535-53 AD-68795.1 UGCCUCAGUGUCUCGGCCA 457 44 44-62 AD-68796.1UGCUCUCUACCCUGCCUCA 458 56 56-74 AD-68797.1 UCGCCCGCAAGCGCUCUCU 459 6767-85 AD-68798.1 UAGCUCCGCCCGGCGCCCG 460 79 79-97 AD-68799.1UGAUCCGCAGCAGCUCCGC 461 89 89-107 AD-68800.1 UCUCGGGUCCUGAUCCGCA 462 99 99-117 AD-68801.1 AUCGGGAAUCGGCUCGGGU 463 110 110-128 AD-68802.1UCUGGGUCGGGAUCGGGAA 464 121 121-139 AD-68803.1 UGCGGGUUAGGAUCUGGGU 465133 133-151 AD-68804.1 UGGGCGGGGGCGCGGGUUA 466 143 143-161 AD-68805.1UGCGGCGGCGGCGGGGCGG 467 155 155-173 AD-68806.1 UGCGUCGUACAUGGCGGCG 468167 167-185 AD-68807.1 AGCCGCGCUCUGCGUCGUA 469 177 177-195 AD-68808.1AGGACAAGCUCCAGCCGCG 470 189 189-207 AD-68809.1 AGCCCGCGAAGGACAAGCU 471198 198-216 AD-68810.1 UAGGAAGCCGCAGCCCGCG 472 209 209-227 AD-68811.1UGUGGUAGAAGCCCAGGAA 473 222 222-240 AD-68812.1 UCGCCCCGACGUGGUAGAA 474231 231-249 AD-68813.1 UAGGCAGCGGGUCGCCCCG 475 242 242-260 AD-68814.1UGGCGUGCUCGCUCAGGCA 476 255 255-273 AD-68815.1 AGGAGGUGCGGGGCGUGCU 477265 265-283 AD-68816.1 UGCGCGUCGCGGAGGAGGU 478 277 277-295 AD-68817.1AACAACAUGCGCGCGUCGC 479 286 286-304 AD-68818.1 UCCGAAGCGCCGAACAACA 480298 298-316 AD-68819.1 UGCAACGCCCCGGCCGAAG 481 310 310-328 AD-68820.1UCCGACGCAGUGCAACGCC 482 320 320-338 AD-68821.1 UGGAGAGGACGCCGACGCA 483330 330-348 AD-68822.1 UCCAGCGGGAUACCGGAGA 484 343 343-361 AD-68823.1AGAGUCUGCUCCAGCGGGA 485 352 352-370 AD-68824.1 AGAGGACCUGCAGAGUCUG 486363 363-381 AD-68825.1 UGCACAAGAUCUGAGAGGA 487 376 376-394 AD-68826.1UCUGGCCUUCCGCACAAGA 488 386 386-404 AD-68827.1 UGUUCCGACUCCUGGCCUU 489396 396-414 AD-68828.1 UGAAGAUGCCAAUGUUCCG 490 408 408-426 AD-68829.1AAGGAUGGAUGGAAGAUGC 491 418 418-436 AD-68830.1 UGCUUAAGUUGAAGGAUGG 492429 429-447 AD-68831.1 UUCGGAGGAACUUGCUUAA 493 441 441-459 AD-68832.1UCAGAGACCCUGUCGGAGG 494 452 452-470 AD-68833.1 UGGGAGGCAUUUGCAGAGA 495464 464-482 AD-68834.1 UGACAUUGGCCGGGAGGCA 496 474 474-492 AD-68835.1AGAUGAGCUGGUGGACAUU 497 486 486-504 AD-68836.1 AUUUUGCCGGAGAUGAGCU 498496 496-514 AD-68837.1 AGAGAUGCCUAUUUUGCCG 499 506 506-524 AD-68838.1ACACUCUGGUAAGAGAGAU 500 519 519-537 AD-68839.1 UCCCAUCAGACACUCUGGU 501528 528-546 AD-68840.1 ACCAGAACGUUUUCCCCAU 502 541 541-559 AD-68841.1AAGUCAGACACCAGAACGU 503 550 550-568 AD-68842.1 CUUUGGACCGAAAGUCAGA 504561 561-579 AD-68843.1 UCACGACUUCGUCUUUGGA 505 573 573-591 AD-68844.1ACCAAGGCAUCCACGACUU 506 583 583-601 AD-68845.1 AAGCAGGAACAUACCAAGG 507595 595-613 AD-68846.1 AGAAGGGGAUGAAGCAGGA 508 606 606-624 AD-68847.1AGGCCACUGUAGAAGGGGA 509 616 616-634 AD-68848.1 AAGGAGGGAUAAGGCCACU 510627 627-645 AD-68849.1 UGCCUCUGAAGGAAGGAGG 511 639 639-657 AD-68850.1ACAUAUCGCACGCCUCUGA 512 649 649-667 AD-68851.1 ACUCCUCCAUCCACAUAUC 513661 661-679 AD-68852.1 ACGUUGUCACUCACUCCUC 514 673 673-691 AD-68853.1AAUGAAGGGUACGUUGUCA 515 683 683-701 AD-68854.1 GUUUUGGCAUCAAUGAAGG 516694 694-712 AD-68855.1 UGUGAUGGUUGUUUUGGCA 517 704 704-722 AD-68856.1AGAAGGGGGACACGGUGAU 518 717 717-735 AD-68857.1 ACUCCCCAUAGAAGGGGGA 519726 726-744 AD-68858.1 UCAGAUGUCGUACUCCCCA 520 737 737-755 AD-68859.1ACUUGACUUUAGGGCAGAU 521 750 750-768 AD-68860.1 AAAGUUCGUGGACUUGACU 522761 761-779 AD-68861.1 UCACAUGAAGAAAGUUCGU 523 771 771-789 AD-68862.1UUGGUGAUGUCCACAUGAA 524 781 781-799 AD-68863.1 UGUAGACUGAGCUUGGUGA 525793 793-811 AD-68864.1 UUGUGCAGAGGCGUAGACU 526 804 804-822 AD-68865.1UUAGAGGUUCCCUGUGCAG 527 815 815-833 AD-68866.1 UCGAGAGAAGGUAGAGGUU 528825 825-843 AD-68867.1 UGGACAAAAGCUCUCGAGA 529 838 838-856 AD-68868.1UGAGAUCCGGGGGGACAAA 530 849 849-867 AD-68869.1 UCAGCACCUUGAGAUCCGG 531858 858-876 AD-68870.1 AGGCAUAUCUCUCCCAGCA 532 871 871-889 AD-68871.1UAUCCUCGAAGGCAUAUCU 533 880 880-898 AD-68872.1 UAAUGCAUCCAAAUAUCCU 534893 893-911 AD-68873.1 UCCAAGAACCUGAAUGCAU 535 904 904-922 AD-68874.1UGCCCUUCUCUUCCAAGAA 536 915 915-933 AD-68875.1 UGUUGCAGAUGCCCUUCUC 537924 924-942 AD-68876.1 UUGGCUGGGGCCUGUUGCA 538 936 936-954 AD-68877.1AUGACUUCAGGCCUGGCUG 539 948 948-966 AD-68878.1 UCCUUCUGAGGAUGACUUC 540959 959-977 AD-68879.1 UAGGAUCCAUCCCUUCUGA 541 969 969-987 AD-68880.1AUGGCGACCUCAGGAUCCA 542 979 979-997 AD-68881.1 UGCCCAGCUGGGCAUGGCG 543992  992-1010 AD-68882.1 ACUCAUGUUUGCCCAGCUG 544 1001 1001-1019AD-68883.1 UGAAGAAUCCAGACUCAUG 545 1013 1013-1031 AD-68884.1AGCCGACUCCGGGGAAGAA 546 1025 1025-1043 AD-68885.1 ACAGCCAAGGCAGCCGACU547 1036 1036-1054 AD-68905.1 UCUCCAGCCUCACAGCCAA 548 1047 1047-1065AD-68906.1 UCUCAUCUCCCUCCAGCCU 549 1056 1056-1074 AD-68907.1AGGUGGUCUAGCAGCUCAU 550 1069 1069-1087 AD-68908.1 UUGAGACGCAGGUGGUCUA551 1078 1078-1096 AD-68909.1 AGGGCAGGAUGCUGAGACG 552 1089 1089-1107AD-68910.1 UCUCUCAUCCCAGGGCAGG 553 1100 1100-1118 AD-68911.1UUGUCCAGGAUGCUCUCAU 554 1111 1111-1129 AD-68912.1 UUGGGCGAGAGGGUGUCCA555 1123 1123-1141 AD-68913.1 UUGUAGCGAGCCUGGGCGA 556 1134 1134-1152AD-68914.1 UCACUCAGUGCUGUAGCGA 557 1144 1144-1162 AD-68915.1CUUUCAUUUCUUCACUCAG 558 1155 1155-1173 AD-68916.1 AUCCACCUUUGUCUUUCAU559 1167 1167-1185 AD-68917.1 UUGCUCAUGUAUCCACCUU 560 1177 1177-1195AD-68918.1 AGUUGCAAAUCUUGCUCAU 561 1188 1188-1206 AD-68919.1AAUGGGUAGCAAGUUGCAA 562 1199 1199-1217 AD-68920.1 AGACAUUAUCCUAAUGGGU563 1211 1211-1229 AD-68921.1 AGCAUUACAUAAGACAUUA 564 1222 1222-1240AD-68922.1 AGGGUACAGGGCAGCAUUA 565 1234 1234-1252 AD-68923.1AUUCCACAGGCAGGGUACA 566 1245 1245-1263 AD-68924.1 UGCAAUGGCAGAUUCCACA567 1256 1256-1274 AD-68925.1 UUGGACAAUCGCAAUGGCA 568 1265 1265-1283AD-68926.1 UUCACCAGUCUCUGGACAA 569 1276 1276-1294 AD-68927.1AUCUGGAAGCCAUGUCACC 570 1289 1289-1307 AD-68928.1 UCGUCGGGCAUAUCUGGAA571 1300 1300-1318 AD-68929.1 UACAGGACAUCGUCGGGCA 572 1309 1309-1327AD-68930.1 ACCCACUGCAACCACAGGA 573 1321 1321-1339 AD-68931.1ACCUGUGAGGUCACCCACU 574 1333 1333-1351 AD-68932.1 UUCGAGUGAACACCUGUGA575 1344 1344-1362 AD-68933.1 ACAUCAGCACUCGAGUGAA 576 1353 1353-1371AD-68934.1 UCGGGGAGCAGACACAUCA 577 1366 1366-1384 AD-68935.1UACCUGGAGGCGGGGAGCA 578 1375 1375-1393 AD-68936.1 ACUGGCAUUUGGGACCUGG579 1387 1387-1405 AD-68937.1 UUGGCUGCUCACUGGCAUU 580 1397 1397-1415AD-68938.1 AUGGGGAGGCCUGUUGGCU 581 1410 1410-1428 AD-68939.1UCAGGUGUGCAUGGGGAGG 582 1420 1420-1438 AD-68940.1 UGCCAGUCCUGCUCAGGUG583 1432 1432-1450 AD-68941.1 UAGUCCAGCAGGGCCAGUC 584 1443 1443-1461AD-68942.1 UGGAGCAGGGAGUCCAGCA 585 1452 1452-1470 AD-68943.1ACAGCCCUUGGGGGAGCAG 586 1463 1463-1481 AD-68944.1 UUCUCUGCUGGACAGCCCU587 1474 1474-1492 AD-68945.1 UCCUCUGCUUUGGUCUCUG 588 1486 1486-1504AD-68946.1 UCGCGGGGUGGCCUCUGCU 589 1496 1496-1514 AD-68947.1ACCUGAGGAUGGACCGCGG 590 1509 1509-1527 AD-68948.1 UUUCAGGCUGGACCUGAGG591 1520 1520-1538 AD-68949.1 UCAAGAAGAAGUUCAGGCU 592 1530 1530-1548AD-68950.1 UUACUUUAUUGCCCAAGAA 593 1542 1542-1560 AD-68951.1AGCACCAGCAGGUACUUUA 594 1553 1553-1571 AD-68952.1 UAGAGCCCCUCAGCACCAG595 1564 1564-1582 AD-68953.1 UGAAAGGUGGAGAGCCCCU 596 1573 1573-1591AD-68954.1 AGUGAAAAACUGGGAAAGG 597 1585 1585-1603 AD-68955.1ACUCUUCUCUAGUGAAAAA 598 1595 1595-1613 AD-68956.1 AAGUGACUCACAGACUCUU599 1608 1608-1626 AD-68957.1 UUCGCCUCCUCAAGUGACU 600 1619 1619-1637AD-68958.1 UCUGCUAGACUCGCCUCCU 601 1628 1628-1646 AD-68959.1ACCUCUGAAAGAAUCUGCU 602 1641 1641-1659 AD-68960.1 AAACUUUAGCACCUCUGAA603 1651 1651-1669 AD-68961.1 ACAAAGAUGGGAAACUUUA 604 1662 1662-1680AD-68962.1 UGAGGUAGCUGCACAAAGA 605 1674 1674-1692 AD-68963.1UAGCAAUGCGGAGGUAGCU 606 1683 1683-1701 AD-68964.1 AGGGGUCACUACACAGCAA607 1696 1696-1714 AD-68965.1 ACGUCACAGGCAGGGGUCA 608 1707 1707-1725AD-68966.1 UGGGAUCCUCCACGUCACA 609 1718 1718-1736 AD-68967.1UCUCAGAGGCUGGGAUCCU 610 1728 1728-1746 AD-68968.1 AAACCAACUCAGCUCAGAG611 1739 1739-1757 AD-68969.1 UAGCUUUUCAUAAAACCAA 612 1751 1751-1769AD-68970.1 AGGUUGCUUCCUAGCUUUU 613 1762 1762-1780 AD-68971.1ACAGGCGAAAGGUUGCUUC 614 1771 1771-1789 AD-68972.1 UGGACCGCUGCACAGGCGA615 1782 1782-1800 AD-68973.1 AGAGUUAAGUGCUGGACCG 616 1794 1794-1812AD-68974.1 UCUGAUGUAUUAGAGUUAA 617 1805 1805-1823 AD-68975.1AUUAACGCAUGCUGAUGUA 618 1815 1815-1833 AD-68976.1 UCAACCAGCUGAAUUAACG619 1827 1827-1845 AD-68977.1 UGUGUCAUUUCCCAACCAG 620 1838 1838-1856AD-68978.1 UGGGCUUCCUGGUGUCAUU 621 1848 1848-1866 AD-68979.1UACCCUCUGCACUGGGCUU 622 1860 1860-1878 AD-68980.1 AGUCAGUAAGGGACCCUCU623 1871 1871-1889 AD-68981.1 UCCACGAAACAGUCAGUAA 624 1881 1881-1899AD-68982.1 UCAUUAAUAGGGCCACGAA 625 1892 1892-1910 AD-68983.1UGAACAGUCUGACCAUUAA 626 1904 1904-1922 AD-68984.1 ACCUCAUGCUGGAACAGUC627 1914 1914-1932 AD-68985.1 UGUCAUUCUAAGAACCUCA 628 1927 1927-1945AD-68986.1 UCAAACACCUGUCAUUCUA 629 1936 1936-1954 AD-68987.1UCCCCCACCCAUCCAAACA 630 1948 1948-1966 AD-68988.1 UCCCAUCACAAGGCCCCCA631 1960 1960-1978 AD-68989.1 UAGCCUACCCCCCAUCACA 632 1969 1969-1987AD-68990.1 UCACACAUGGGCCAGCCUA 633 1981 1981-1999 AD-68991.1UACCCCACAAGAUCACACA 634 1993 1993-2011 AD-68992.1 UCUUCCCUCCACCCCACAA635 2002 2002-2020 AD-68993.1 UCAUGCUAUUCUCUUCCCU 636 2013 2013-2031AD-68994.1 UGGAAGUGGGAUCAUGCUA 637 2024 2024-2042 AD-68995.1UCCCACAGCAUGGGGAAGU 638 2036 2036-2054 AD-68996.1 ACUGCACCCCUUCCCACAG639 2047 2047-2065 AD-68997.1 UCUUGGGGACGAACUGCAC 640 2059 2059-2077AD-68998.1 UCAGUGUCGUUCUUGGGGA 641 2069 2069-2087 AD-69014.1ACCACCUGACAGGCAGUGU 642 2081 2081-2099 AD-69015.1 AUCUUUGCAGACCACCUGA643 2091 2091-2109 AD-69016.1 UAAGGUUAUCAUCUUUGCA 644 2101 2101-2119AD-69017.1 GUUUUUAGUAGUCAAGGUU 645 2113 2113-2131 AD-69018.1UGCCAUGGAGACGUUUUUA 646 2125 2125-2143 AD-69019.1 UUUGUUACCCCCGCCAUGG647 2136 2136-2154 AD-69020.1 AGAUUAUCAUCUUGUUACC 648 2146 2146-2164AD-69021.1 AAAAUUAAGUAGAUUAUCA 649 2156 2156-2174 AD-69022.1AAAGGUGUUCUAAAAUUAA 650 2167 2167-2185 AD-69023.1 AGUUAGGUGAAAAAGGUGU651 2178 2178-2196 AD-69024.1 AAACAUUAUUUUAGUUAGG 652 2190 2190-2208AD-69025.1 AAAACUCUUUAAACAUUAU 653 2200 2200-2218 AD-69026.1ACAUUUUUAUACAAAACUC 654 2212 2212-2230 AD-69027.1 AACGCUUCCUUACAUUUUU655 2223 2223-2241 AD-69028.1 AACAGGUAACAACGCUUCC 656 2233 2233-2251AD-69029.1 AUACAAAAUUCAACAGGUA 657 2244 2244-2262 AD-69030.1ACUGAUUCACAUAAUACAA 658 2257 2257-2275 AD-69031.1 ACUAACAUCUCACUGAUUC659 2268 2268-2286 AD-69032.1 AGGCUUAUUCUACUAACAU 660 2279 2279-2297AD-69033.1 UUUUUUUUUUAAGGCUUAU 661 2290 2290-2308 AD-69034.1AACCGAUUUUUUUUUUUUU 662 2299 2299-2317 AD-69035.1 UCACUGCACCCAACCGAUU663 2310 2310-2328 AD-69036.1 ACAGCCGUGUGCCACUGCA 664 2321 2321-2339AD-69037.1 AAGUGCUGGGAUUACAGCC 665 2334 2334-2352 AD-69038.1UUGGCCUCCCAAAGUGCUG 666 2345 2345-2363 AD-69039.1 AUCUGCCAACCUUGGCCUC667 2356 2356-2374 AD-69040.1 ACCUCAGGUGAUCUGCCAA 668 2366 2366-2384AD-69041.1 UUUGAACUCCUGACCUCAG 669 2378 2378-2396 AD-69042.1UCAGACUGGUCUUGAACUC 670 2388 2388-2406 AD-69043.1 UGCUAUGUUGGCCAGACUG671 2399 2399-2417 AD-69044.1 UACAGGGUUUUGCUAUGUU 672 2409 2409-2427AD-69045.1 AUUUUUAGUAGAGACAGGG 673 2421 2421-2439 AD-69046.1AUAAUUUUUGUAUUUUUAG 674 2432 2432-2450 AD-69047.1 ACCAUGCCCAGAUAAUUUU675 2443 2443-2461 AD-69048.1 AGGCAUGCACCACCAUGCC 676 2454 2454-2472AD-69049.1 AGCUGGGAUUACAGGCAUG 677 2466 2466-2484 AD-69050.1UUUCCGAAUAGCUGGGAUU 678 2475 2475-2493 AD-69051.1 UCUGCCUCAGCCUUCCGAA679 2486 2486-2504 AD-69052.1 UCAAGUGAUUCUCCUGCCU 680 2498 2498-2516AD-69053.1 UCUCCUGGGUUCAAGUGAU 681 2508 2508-2526 AD-69054.1UCGCAACCUCCGCCUCCUG 682 2520 2520-2538 AD-69055.1 AAUCUCAGCUCACCGCAAC683 2532 2532-2550 AD-69056.1 UGAAAUGGUGCAAUCUCAG 684 2543 2543-2561AD-69057.1 AGGCUGGAAUGAAAUGGUG 685 2552 2552-2570 AD-69058.1ACUCAUGUUGCCCAGGCUG 686 2565 2565-2583 AD-69059.1 UCAGACUUUCACUCAUGUU687 2575 2575-2593 AD-69060.1 UUUUUUUUUGAGUCAGACU 688 2587 2587-2605AD-69061.1 UUUUAAAUUUUUUUUUUUU 689 2597 2597-2615 AD-69062.1UAUUAUUUUGUUUUUUAAA 690 2609 2609-2627 AD-69063.1 UUGCACACUAGAUUAUUUU691 2619 2619-2637 AD-69064.1 AGGUGAAUGCCCUGCACAC 692 2630 2630-2648AD-69065.1 UGGGGGGCUGAGGUGAAUG 693 2640 2640-2658 AD-69066.1UUUGGCUCCUGCCUGGGGG 694 2653 2653-2671 AD-69067.1 UCUGCUGUGCUUGGCUCCU695 2662 2662-2680 AD-69068.1 AGGCGGAAGCUCCUGCUGU 696 2673 2673-2691AD-69069.1 UAGUGGAGAGGAGGCGGAA 697 2684 2684-2702 AD-69070.1AGUUGUGUGCUCCAGUGGA 698 2696 2696-2714 AD-69071.1 AGCCAGGUUCAAGUUGUGU699 2707 2707-2725 AD-69072.1 UCAGAAAAUAAGCCAGGUU 700 2717 2717-2735AD-69073.1 UGGGCUGGUCCCUGCAGAA 701 2730 2730-2748 AD-69074.1ACUGACCAUGUGGGGCUGG 702 2741 2741-2759 AD-69076.1 UGCCACACAUGGGGAGAAA703 2763 2763-2781 AD-69077.1 CUUUAUUUCUACACUCUCU 704 2785 2785-2803

TABLE 5 Modified Sense and Antisense Strand Sequences of PNPLA3 RNAiAgents SEQ SEQ Sense Oligo ID Antisense ID Duplex Name Name SenseSequence (5′-3′) NO Oligo Name Antisense Sequence (5′-3′) NO AD-68792.1A-138374.1 GGGGGCGGGGCUGACGUCAdTdT 705 A-138375.1UGACGUCAGCCCCGCCCCCdTdT 956 AD-68793.1 A-138376.1ACGUCGCGCUGGGAAUGCAdTdT 706 A-138377.1 UGCAUUCCCAGCGCGACGUdTdT 957AD-68794.1 A-138378.1 GGAAUGCCCUGGCCGAGAAdTdT 707 A-138379.1UUCUCGGCCAGGGCAUUCCdTdT 958 AD-68795.1 A-138380.1UGGCCGAGACACUGAGGCAdTdT 708 A-138381.1 UGCCUCAGUGUCUCGGCCAdTdT 959AD-68796.1 A-138382.1 UGAGGCAGGGUAGAGAGCAdTdT 709 A-138383.1UGCUCUCUACCCUGCCUCAdTdT 960 AD-68797.1 A-138384.1AGAGAGCGCUUGCGGGCGAdTdT 710 A-138385.1 UCGCCCGCAAGCGCUCUCUdTdT 961AD-68798.1 A-138386.1 CGGGCGCCGGGCGGAGCUAdTdT 711 A-138387.1UAGCUCCGCCCGGCGCCCGdTdT 962 AD-68799.1 A-138388.1GCGGAGCUGCUGCGGAUCAdTdT 712 A-138389.1 UGAUCCGCAGCAGCUCCGCdTdT 963AD-68800.1 A-138390.1 UGCGGAUCAGGACCCGAGAdTdT 713 A-138391.1UCUCGGGUCCUGAUCCGCAdTdT 964 AD-68801.1 A-138392.1ACCCGAGCCGAUUCCCGAUdTdT 714 A-138393.1 AUCGGGAAUCGGCUCGGGUdTdT 965AD-68802.1 A-138394.1 UUCCCGAUCCCGACCCAGAdTdT 715 A-138395.1UCUGGGUCGGGAUCGGGAAdTdT 966 AD-68803.1 A-138396.1ACCCAGAUCCUAACCCGCAdTdT 716 A-138397.1 UGCGGGUUAGGAUCUGGGUdTdT 967AD-68804.1 A-138398.1 UAACCCGCGCCCCCGCCCAdTdT 717 A-138399.1UGGGCGGGGGCGCGGGUUAdTdT 968 AD-68805.1 A-138400.1CCGCCCCGCCGCCGCCGCAdTdT 718 A-138401.1 UGCGGCGGCGGCGGGGCGGdTdT 969AD-68806.1 A-138402.1 CGCCGCCAUGUACGACGCAdTdT 719 A-138403.1UGCGUCGUACAUGGCGGCGdTdT 970 AD-68807.1 A-138404.1UACGACGCAGAGCGCGGCUdTdT 720 A-138405.1 AGCCGCGCUCUGCGUCGUAdTdT 971AD-68808.1 A-138406.1 CGCGGCUGGAGCUUGUCCUdTdT 721 A-138407.1AGGACAAGCUCCAGCCGCGdTdT 972 AD-68809.1 A-138408.1AGCUUGUCCUUCGCGGGCUdTdT 722 A-138409.1 AGCCCGCGAAGGACAAGCUdTdT 973AD-68810.1 A-138410.1 CGCGGGCUGCGGCUUCCUAdTdT 723 A-138411.1UAGGAAGCCGCAGCCCGCGdTdT 974 AD-68811.1 A-138412.1UUCCUGGGCUUCUACCACAdTdT 724 A-138413.1 UGUGGUAGAAGCCCAGGAAdTdT 975AD-68812.1 A-138414.1 UUCUACCACGUCGGGGCGAdTdT 725 A-138415.1UCGCCCCGACGUGGUAGAAdTdT 976 AD-68813.1 A-138416.1CGGGGCGACCCGCUGCCUAdTdT 726 A-138417.1 UAGGCAGCGGGUCGCCCCGdTdT 977AD-68814.1 A-138418.1 UGCCUGAGCGAGCACGCCAdTdT 727 A-138419.1UGGCGUGCUCGCUCAGGCAdTdT 978 AD-68815.1 A-138420.1AGCACGCCCCGCACCUCCUdTdT 728 A-138421.1 AGGAGGUGCGGGGCGUGCUdTdT 979AD-68816.1 A-138422.1 ACCUCCUCCGCGACGCGCAdTdT 729 A-138423.1UGCGCGUCGCGGAGGAGGUdTdT 980 AD-68817.1 A-138424.1GCGACGCGCGCAUGUUGUUdTdT 730 A-138425.1 AACAACAUGCGCGCGUCGCdTdT 981AD-68818.1 A-138426.1 UGUUGUUCGGCGCUUCGGAdTdT 731 A-138427.1UCCGAAGCGCCGAACAACAdTdT 982 AD-68819.1 A-138428.1CUUCGGCCGGGGCGUUGCAdTdT 732 A-138429.1 UGCAACGCCCCGGCCGAAGdTdT 983AD-68820.1 A-138430.1 GGCGUUGCACUGCGUCGGAdTdT 733 A-138431.1UCCGACGCAGUGCAACGCCdTdT 984 AD-68821.1 A-138432.1UGCGUCGGCGUCCUCUCCAdTdT 734 A-138433.1 UGGAGAGGACGCCGACGCAdTdT 985AD-68822.1 A-138434.1 UCUCCGGUAUCCCGCUGGAdTdT 735 A-138435.1UCCAGCGGGAUACCGGAGAdTdT 986 AD-68823.1 A-138436.1UCCCGCUGGAGCAGACUCUdTdT 736 A-138437.1 AGAGUCUGCUCCAGCGGGAdTdT 987AD-68824.1 A-138438.1 CAGACUCUGCAGGUCCUCUdTdT 737 A-138439.1AGAGGACCUGCAGAGUCUGdTdT 988 AD-68825.1 A-138440.1UCCUCUCAGAUCUUGUGCAdTdT 738 A-138441.1 UGCACAAGAUCUGAGAGGAdTdT 989AD-68826.1 A-138442.1 UCUUGUGCGGAAGGCCAGAdTdT 739 A-138443.1UCUGGCCUUCCGCACAAGAdTdT 990 AD-68827.1 A-138444.1AAGGCCAGGAGUCGGAACAdTdT 740 A-138445.1 UGUUCCGACUCCUGGCCUUdTdT 991AD-68828.1 A-138446.1 CGGAACAUUGGCAUCUUCAdTdT 741 A-138447.1UGAAGAUGCCAAUGUUCCGdTdT 992 AD-68829.1 A-138448.1GCAUCUUCCAUCCAUCCUUdTdT 742 A-138449.1 AAGGAUGGAUGGAAGAUGCdTdT 993AD-68830.1 A-138450.1 CCAUCCUUCAACUUAAGCAdTdT 743 A-138451.1UGCUUAAGUUGAAGGAUGGdTdT 994 AD-68831.1 A-138452.1UUAAGCAAGUUCCUCCGAAdTdT 744 A-138453.1 UUCGGAGGAACUUGCUUAAdTdT 995AD-68832.1 A-138454.1 CCUCCGACAGGGUCUCUGAdTdT 745 A-138455.1UCAGAGACCCUGUCGGAGGdTdT 996 AD-68833.1 A-138456.1UCUCUGCAAAUGCCUCCCAdTdT 746 A-138457.1 UGGGAGGCAUUUGCAGAGAdTdT 997AD-68834.1 A-138458.1 UGCCUCCCGGCCAAUGUCAdTdT 747 A-138459.1UGACAUUGGCCGGGAGGCAdTdT 998 AD-68835.1 A-138460.1AAUGUCCACCAGCUCAUCUdTdT 748 A-138461.1 AGAUGAGCUGGUGGACAUUdTdT 999AD-68836.1 A-138462.1 AGCUCAUCUCCGGCAAAAUdTdT 749 A-138463.1AUUUUGCCGGAGAUGAGCUdTdT 1000 AD-68837.1 A-138464.1CGGCAAAAUAGGCAUCUCUdTdT 750 A-138465.1 AGAGAUGCCUAUUUUGCCGdTdT 1001AD-68838.1 A-138466.1 AUCUCUCUUACCAGAGUGUdTdT 751 A-138467.1ACACUCUGGUAAGAGAGAUdTdT 1002 AD-68839.1 A-138468.1ACCAGAGUGUCUGAUGGGAdTdT 752 A-138469.1 UCCCAUCAGACACUCUGGUdTdT 1003AD-68840.1 A-138470.1 AUGGGGAAAACGUUCUGGUdTdT 753 A-138471.1ACCAGAACGUUUUCCCCAUdTdT 1004 AD-68841.1 A-138472.1ACGUUCUGGUGUCUGACUUdTdT 754 A-138473.1 AAGUCAGACACCAGAACGUdTdT 1005AD-68842.1 A-138474.1 UCUGACUUUCGGUCCAAAGdTdT 755 A-138475.1CUUUGGACCGAAAGUCAGAdTdT 1006 AD-68843.1 A-138476.1UCCAAAGACGAAGUCGUGAdTdT 756 A-138477.1 UCACGACUUCGUCUUUGGAdTdT 1007AD-68844.1 A-138478.1 AAGUCGUGGAUGCCUUGGUdTdT 757 A-138479.1ACCAAGGCAUCCACGACUUdTdT 1008 AD-68845.1 A-138480.1CCUUGGUAUGUUCCUGCUUdTdT 758 A-138481.1 AAGCAGGAACAUACCAAGGdTdT 1009AD-68846.1 A-138482.1 UCCUGCUUCAUCCCCUUCUdTdT 759 A-138483.1AGAAGGGGAUGAAGCAGGAdTdT 1010 AD-68847.1 A-138484.1UCCCCUUCUACAGUGGCCUdTdT 760 A-138485.1 AGGCCACUGUAGAAGGGGAdTdT 1011AD-68848.1 A-138486.1 AGUGGCCUUAUCCCUCCUUdTdT 761 A-138487.1AAGGAGGGAUAAGGCCACUdTdT 1012 AD-68849.1 A-138488.1CCUCCUUCCUUCAGAGGCAdTdT 762 A-138489.1 UGCCUCUGAAGGAAGGAGGdTdT 1013AD-68850.1 A-138490.1 UCAGAGGCGUGCGAUAUGUdTdT 763 A-138491.1ACAUAUCGCACGCCUCUGAdTdT 1014 AD-68851.1 A-138492.1GAUAUGUGGAUGGAGGAGUdTdT 764 A-138493.1 ACUCCUCCAUCCACAUAUCdTdT 1015AD-68852.1 A-138494.1 GAGGAGUGAGUGACAACGUdTdT 765 A-138495.1ACGUUGUCACUCACUCCUCdTdT 1016 AD-68853.1 A-138496.1UGACAACGUACCCUUCAUUdTdT 766 A-138497.1 AAUGAAGGGUACGUUGUCAdTdT 1017AD-68854.1 A-138498.1 CCUUCAUUGAUGCCAAAACdTdT 767 A-138499.1GUUUUGGCAUCAAUGAAGGdTdT 1018 AD-68855.1 A-138500.1UGCCAAAACAACCAUCACAdTdT 768 A-138501.1 UGUGAUGGUUGUUUUGGCAdTdT 1019AD-68856.1 A-138502.1 AUCACCGUGUCCCCCUUCUdTdT 769 A-138503.1AGAAGGGGGACACGGUGAUdTdT 1020 AD-68857.1 A-138504.1UCCCCCUUCUAUGGGGAGUdTdT 770 A-138505.1 ACUCCCCAUAGAAGGGGGAdTdT 1021AD-68858.1 A-138506.1 UGGGGAGUACGACAUCUGAdTdT 771 A-138507.1UCAGAUGUCGUACUCCCCAdTdT 1022 AD-68859.1 A-138508.1AUCUGCCCUAAAGUCAAGUdTdT 772 A-138509.1 ACUUGACUUUAGGGCAGAUdTdT 1023AD-68860.1 A-138510.1 AGUCAAGUCCACGAACUUUdTdT 773 A-138511.1AAAGUUCGUGGACUUGACUdTdT 1024 AD-68861.1 A-138512.1ACGAACUUUCUUCAUGUGAdTdT 774 A-138513.1 UCACAUGAAGAAAGUUCGUdTdT 1025AD-68862.1 A-138514.1 UUCAUGUGGACAUCACCAAdTdT 775 A-138515.1UUGGUGAUGUCCACAUGAAdTdT 1026 AD-68863.1 A-138516.1UCACCAAGCUCAGUCUACAdTdT 776 A-138517.1 UGUAGACUGAGCUUGGUGAdTdT 1027AD-68864.1 A-138518.1 AGUCUACGCCUCUGCACAAdTdT 777 A-138519.1UUGUGCAGAGGCGUAGACUdTdT 1028 AD-68865.1 A-138520.1CUGCACAGGGAACCUCUAAdTdT 778 A-138521.1 UUAGAGGUUCCCUGUGCAGdTdT 1029AD-68866.1 A-138522.1 AACCUCUACCUUCUCUCGAdTdT 779 A-138523.1UCGAGAGAAGGUAGAGGUUdTdT 1030 AD-68867.1 A-138524.1UCUCGAGAGCUUUUGUCCAdTdT 780 A-138525.1 UGGACAAAAGCUCUCGAGAdTdT 1031AD-68868.1 A-138526.1 UUUGUCCCCCCGGAUCUCAdTdT 781 A-138527.1UGAGAUCCGGGGGGACAAAdTdT 1032 AD-68869.1 A-138528.1CCGGAUCUCAAGGUGCUGAdTdT 782 A-138529.1 UCAGCACCUUGAGAUCCGGdTdT 1033AD-68870.1 A-138530.1 UGCUGGGAGAGAUAUGCCUdTdT 783 A-138531.1AGGCAUAUCUCUCCCAGCAdTdT 1034 AD-68871.1 A-138532.1AGAUAUGCCUUCGAGGAUAdTdT 784 A-138533.1 UAUCCUCGAAGGCAUAUCUdTdT 1035AD-68872.1 A-138534.1 AGGAUAUUUGGAUGCAUUAdTdT 785 A-138535.1UAAUGCAUCCAAAUAUCCUdTdT 1036 AD-68873.1 A-138536.1AUGCAUUCAGGUUCUUGGAdTdT 786 A-138537.1 UCCAAGAACCUGAAUGCAUdTdT 1037AD-68874.1 A-138538.1 UUCUUGGAAGAGAAGGGCAdTdT 787 A-138539.1UGCCCUUCUCUUCCAAGAAdTdT 1038 AD-68875.1 A-138540.1GAGAAGGGCAUCUGCAACAdTdT 788 A-138541.1 UGUUGCAGAUGCCCUUCUCdTdT 1039AD-68876.1 A-138542.1 UGCAACAGGCCCCAGCCAAdTdT 789 A-138543.1UUGGCUGGGGCCUGUUGCAdTdT 1040 AD-68877.1 A-138544.1CAGCCAGGCCUGAAGUCAUdTdT 790 A-138545.1 AUGACUUCAGGCCUGGCUGdTdT 1041AD-68878.1 A-138546.1 GAAGUCAUCCUCAGAAGGAdTdT 791 A-138547.1UCCUUCUGAGGAUGACUUCdTdT 1042 AD-68879.1 A-138548.1UCAGAAGGGAUGGAUCCUAdTdT 792 A-138549.1 UAGGAUCCAUCCCUUCUGAdTdT 1043AD-68880.1 A-138550.1 UGGAUCCUGAGGUCGCCAUdTdT 793 A-138551.1AUGGCGACCUCAGGAUCCAdTdT 1044 AD-68881.1 A-138552.1CGCCAUGCCCAGCUGGGCAdTdT 794 A-138553.1 UGCCCAGCUGGGCAUGGCGdTdT 1045AD-68882.1 A-138554.1 CAGCUGGGCAAACAUGAGUdTdT 795 A-138555.1ACUCAUGUUUGCCCAGCUGdTdT 1046 AD-68883.1 A-138556.1CAUGAGUCUGGAUUCUUCAdTdT 796 A-138557.1 UGAAGAAUCCAGACUCAUGdTdT 1047AD-68884.1 A-138558.1 UUCUUCCCCGGAGUCGGCUdTdT 797 A-138559.1AGCCGACUCCGGGGAAGAAdTdT 1048 AD-68885.1 A-138560.1AGUCGGCUGCCUUGGCUGUdTdT 798 A-138561.1 ACAGCCAAGGCAGCCGACUdTdT 1049AD-68905.1 A-138562.1 UUGGCUGUGAGGCUGGAGAdTdT 799 A-138563.1UCUCCAGCCUCACAGCCAAdTdT 1050 AD-68906.1 A-138564.1AGGCUGGAGGGAGAUGAGAdTdT 800 A-138565.1 UCUCAUCUCCCUCCAGCCUdTdT 1051AD-68907.1 A-138566.1 AUGAGCUGCUAGACCACCUdTdT 801 A-138567.1AGGUGGUCUAGCAGCUCAUdTdT 1052 AD-68908.1 A-138568.1UAGACCACCUGCGUCUCAAdTdT 802 A-138569.1 UUGAGACGCAGGUGGUCUAdTdT 1053AD-68909.1 A-138570.1 CGUCUCAGCAUCCUGCCCUdTdT 803 A-138571.1AGGGCAGGAUGCUGAGACGdTdT 1054 AD-68910.1 A-138572.1CCUGCCCUGGGAUGAGAGAdTdT 804 A-138573.1 UCUCUCAUCCCAGGGCAGGdTdT 1055AD-68911.1 A-138574.1 AUGAGAGCAUCCUGGACAAdTdT 805 A-138575.1UUGUCCAGGAUGCUCUCAUdTdT 1056 AD-68912.1 A-138576.1UGGACACCCUCUCGCCCAAdTdT 806 A-138577.1 UUGGGCGAGAGGGUGUCCAdTdT 1057AD-68913.1 A-138578.1 UCGCCCAGGCUCGCUACAAdTdT 807 A-138579.1UUGUAGCGAGCCUGGGCGAdTdT 1058 AD-68914.1 A-138580.1UCGCUACAGCACUGAGUGAdTdT 808 A-138581.1 UCACUCAGUGCUGUAGCGAdTdT 1059AD-68915.1 A-138582.1 CUGAGUGAAGAAAUGAAAGdTdT 809 A-138583.1CUUUCAUUUCUUCACUCAGdTdT 1060 AD-68916.1 A-138584.1AUGAAAGACAAAGGUGGAUdTdT 810 A-138585.1 AUCCACCUUUGUCUUUCAUdTdT 1061AD-68917.1 A-138586.1 AAGGUGGAUACAUGAGCAAdTdT 811 A-138587.1UUGCUCAUGUAUCCACCUUdTdT 1062 AD-68918.1 A-138588.1AUGAGCAAGAUUUGCAACUdTdT 812 A-138589.1 AGUUGCAAAUCUUGCUCAUdTdT 1063AD-68919.1 A-138590.1 UUGCAACUUGCUACCCAUUdTdT 813 A-138591.1AAUGGGUAGCAAGUUGCAAdTdT 1064 AD-68920.1 A-138592.1ACCCAUUAGGAUAAUGUCUdTdT 814 A-138593.1 AGACAUUAUCCUAAUGGGUdTdT 1065AD-68921.1 A-138594.1 UAAUGUCUUAUGUAAUGCUdTdT 815 A-138595.1AGCAUUACAUAAGACAUUAdTdT 1066 AD-68922.1 A-138596.1UAAUGCUGCCCUGUACCCUdTdT 816 A-138597.1 AGGGUACAGGGCAGCAUUAdTdT 1067AD-68923.1 A-138598.1 UGUACCCUGCCUGUGGAAUdTdT 817 A-138599.1AUUCCACAGGCAGGGUACAdTdT 1068 AD-68924.1 A-138600.1UGUGGAAUCUGCCAUUGCAdTdT 818 A-138601.1 UGCAAUGGCAGAUUCCACAdTdT 1069AD-68925.1 A-138602.1 UGCCAUUGCGAUUGUCCAAdTdT 819 A-138603.1UUGGACAAUCGCAAUGGCAdTdT 1070 AD-68926.1 A-138604.1UUGUCCAGAGACUGGUGAAdTdT 820 A-138605.1 UUCACCAGUCUCUGGACAAdTdT 1071AD-68927.1 A-138606.1 GGUGACAUGGCUUCCAGAUdTdT 821 A-138607.1AUCUGGAAGCCAUGUCACCdTdT 1072 AD-68928.1 A-138608.1UUCCAGAUAUGCCCGACGAdTdT 822 A-138609.1 UCGUCGGGCAUAUCUGGAAdTdT 1073AD-68929.1 A-138610.1 UGCCCGACGAUGUCCUGUAdTdT 823 A-138611.1UACAGGACAUCGUCGGGCAdTdT 1074 AD-68930.1 A-138612.1UCCUGUGGUUGCAGUGGGUdTdT 824 A-138613.1 ACCCACUGCAACCACAGGAdTdT 1075AD-68931.1 A-138614.1 AGUGGGUGACCUCACAGGUdTdT 825 A-138615.1ACCUGUGAGGUCACCCACUdTdT 1076 AD-68932.1 A-138616.1UCACAGGUGUUCACUCGAAdTdT 826 A-138617.1 UUCGAGUGAACACCUGUGAdTdT 1077AD-68933.1 A-138618.1 UUCACUCGAGUGCUGAUGUdTdT 827 A-138619.1ACAUCAGCACUCGAGUGAAdTdT 1078 AD-68934.1 A-138620.1UGAUGUGUCUGCUCCCCGAdTdT 828 A-138621.1 UCGGGGAGCAGACACAUCAdTdT 1079AD-68935.1 A-138622.1 UGCUCCCCGCCUCCAGGUAdTdT 829 A-138623.1UACCUGGAGGCGGGGAGCAdTdT 1080 AD-68936.1 A-138624.1CCAGGUCCCAAAUGCCAGUdTdT 830 A-138625.1 ACUGGCAUUUGGGACCUGGdTdT 1081AD-68937.1 A-138626.1 AAUGCCAGUGAGCAGCCAAdTdT 831 A-138627.1UUGGCUGCUCACUGGCAUUdTdT 1082 AD-68938.1 A-138628.1AGCCAACAGGCCUCCCCAUdTdT 832 A-138629.1 AUGGGGAGGCCUGUUGGCUdTdT 1083AD-68939.1 A-138630.1 CCUCCCCAUGCACACCUGAdTdT 833 A-138631.1UCAGGUGUGCAUGGGGAGGdTdT 1084 AD-68940.1 A-138632.1CACCUGAGCAGGACUGGCAdTdT 834 A-138633.1 UGCCAGUCCUGCUCAGGUGdTdT 1085AD-68941.1 A-138634.1 GACUGGCCCUGCUGGACUAdTdT 835 A-138635.1UAGUCCAGCAGGGCCAGUCdTdT 1086 AD-68942.1 A-138636.1UGCUGGACUCCCUGCUCCAdTdT 836 A-138637.1 UGGAGCAGGGAGUCCAGCAdTdT 1087AD-68943.1 A-138638.1 CUGCUCCCCCAAGGGCUGUdTdT 837 A-138639.1ACAGCCCUUGGGGGAGCAGdTdT 1088 AD-68944.1 A-138640.1AGGGCUGUCCAGCAGAGAAdTdT 838 A-138641.1 UUCUCUGCUGGACAGCCCUdTdT 1089AD-68945.1 A-138642.1 CAGAGACCAAAGCAGAGGAdTdT 839 A-138643.1UCCUCUGCUUUGGUCUCUGdTdT 1090 AD-68946.1 A-138644.1AGCAGAGGCCACCCCGCGAdTdT 840 A-138645.1 UCGCGGGGUGGCCUCUGCUdTdT 1091AD-68947.1 A-138646.1 CCGCGGUCCAUCCUCAGGUdTdT 841 A-138647.1ACCUGAGGAUGGACCGCGGdTdT 1092 AD-68948.1 A-138648.1CCUCAGGUCCAGCCUGAAAdTdT 842 A-138649.1 UUUCAGGCUGGACCUGAGGdTdT 1093AD-68949.1 A-138650.1 AGCCUGAACUUCUUCUUGAdTdT 843 A-138651.1UCAAGAAGAAGUUCAGGCUdTdT 1094 AD-68950.1 A-138652.1UUCUUGGGCAAUAAAGUAAdTdT 844 A-138653.1 UUACUUUAUUGCCCAAGAAdTdT 1095AD-68951.1 A-138654.1 UAAAGUACCUGCUGGUGCUdTdT 845 A-138655.1AGCACCAGCAGGUACUUUAdTdT 1096 AD-68952.1 A-138656.1CUGGUGCUGAGGGGCUCUAdTdT 846 A-138657.1 UAGAGCCCCUCAGCACCAGdTdT 1097AD-68953.1 A-138658.1 AGGGGCUCUCCACCUUUCAdTdT 847 A-138659.1UGAAAGGUGGAGAGCCCCUdTdT 1098 AD-68954.1 A-138660.1CCUUUCCCAGUUUUUCACUdTdT 848 A-138661.1 AGUGAAAAACUGGGAAAGGdTdT 1099AD-68955.1 A-138662.1 UUUUUCACUAGAGAAGAGUdTdT 849 A-138663.1ACUCUUCUCUAGUGAAAAAdTdT 1100 AD-68956.1 A-138664.1AAGAGUCUGUGAGUCACUUdTdT 850 A-138665.1 AAGUGACUCACAGACUCUUdTdT 1101AD-68957.1 A-138666.1 AGUCACUUGAGGAGGCGAAdTdT 851 A-138667.1UUCGCCUCCUCAAGUGACUdTdT 1102 AD-68958.1 A-138668.1AGGAGGCGAGUCUAGCAGAdTdT 852 A-138669.1 UCUGCUAGACUCGCCUCCUdTdT 1103AD-68959.1 A-138670.1 AGCAGAUUCUUUCAGAGGUdTdT 853 A-138671.1ACCUCUGAAAGAAUCUGCUdTdT 1104 AD-68960.1 A-138672.1UUCAGAGGUGCUAAAGUUUdTdT 854 A-138673.1 AAACUUUAGCACCUCUGAAdTdT 1105AD-68961.1 A-138674.1 UAAAGUUUCCCAUCUUUGUdTdT 855 A-138675.1ACAAAGAUGGGAAACUUUAdTdT 1106 AD-68962.1 A-138676.1UCUUUGUGCAGCUACCUCAdTdT 856 A-138677.1 UGAGGUAGCUGCACAAAGAdTdT 1107AD-68963.1 A-138678.1 AGCUACCUCCGCAUUGCUAdTdT 857 A-138679.1UAGCAAUGCGGAGGUAGCUdTdT 1108 AD-68964.1 A-138680.1UUGCUGUGUAGUGACCCCUdTdT 858 A-138681.1 AGGGGUCACUACACAGCAAdTdT 1109AD-68965.1 A-138682.1 UGACCCCUGCCUGUGACGUdTdT 859 A-138683.1ACGUCACAGGCAGGGGUCAdTdT 1110 AD-68966.1 A-138684.1UGUGACGUGGAGGAUCCCAdTdT 860 A-138685.1 UGGGAUCCUCCACGUCACAdTdT 1111AD-68967.1 A-138686.1 AGGAUCCCAGCCUCUGAGAdTdT 861 A-138687.1UCUCAGAGGCUGGGAUCCUdTdT 1112 AD-68968.1 A-138688.1CUCUGAGCUGAGUUGGUUUdTdT 862 A-138689.1 AAACCAACUCAGCUCAGAGdTdT 1113AD-68969.1 A-138690.1 UUGGUUUUAUGAAAAGCUAdTdT 863 A-138691.1UAGCUUUUCAUAAAACCAAdTdT 1114 AD-68970.1 A-138692.1AAAAGCUAGGAAGCAACCUdTdT 864 A-138693.1 AGGUUGCUUCCUAGCUUUUdTdT 1115AD-68971.1 A-138694.1 GAAGCAACCUUUCGCCUGUdTdT 865 A-138695.1ACAGGCGAAAGGUUGCUUCdTdT 1116 AD-68972.1 A-138696.1UCGCCUGUGCAGCGGUCCAdTdT 866 A-138697.1 UGGACCGCUGCACAGGCGAdTdT 1117AD-68973.1 A-138698.1 CGGUCCAGCACUUAACUCUdTdT 867 A-138699.1AGAGUUAAGUGCUGGACCGdTdT 1118 AD-68974.1 A-138700.1UUAACUCUAAUACAUCAGAdTdT 868 A-138701.1 UCUGAUGUAUUAGAGUUAAdTdT 1119AD-68975.1 A-138702.1 UACAUCAGCAUGCGUUAAUdTdT 869 A-138703.1AUUAACGCAUGCUGAUGUAdTdT 1120 AD-68976.1 A-138704.1CGUUAAUUCAGCUGGUUGAdTdT 870 A-138705.1 UCAACCAGCUGAAUUAACGdTdT 1121AD-68977.1 A-138706.1 CUGGUUGGGAAAUGACACAdTdT 871 A-138707.1UGUGUCAUUUCCCAACCAGdTdT 1122 AD-68978.1 A-138708.1AAUGACACCAGGAAGCCCAdTdT 872 A-138709.1 UGGGCUUCCUGGUGUCAUUdTdT 1123AD-68979.1 A-138710.1 AAGCCCAGUGCAGAGGGUAdTdT 873 A-138711.1UACCCUCUGCACUGGGCUUdTdT 1124 AD-68980.1 A-138712.1AGAGGGUCCCUUACUGACUdTdT 874 A-138713.1 AGUCAGUAAGGGACCCUCUdTdT 1125AD-68981.1 A-138714.1 UUACUGACUGUUUCGUGGAdTdT 875 A-138715.1UCCACGAAACAGUCAGUAAdTdT 1126 AD-68982.1 A-138716.1UUCGUGGCCCUAUUAAUGAdTdT 876 A-138717.1 UCAUUAAUAGGGCCACGAAdTdT 1127AD-68983.1 A-138718.1 UUAAUGGUCAGACUGUUCAdTdT 877 A-138719.1UGAACAGUCUGACCAUUAAdTdT 1128 AD-68984.1 A-138720.1GACUGUUCCAGCAUGAGGUdTdT 878 A-138721.1 ACCUCAUGCUGGAACAGUCdTdT 1129AD-68985.1 A-138722.1 UGAGGUUCUUAGAAUGACAdTdT 879 A-138723.1UGUCAUUCUAAGAACCUCAdTdT 1130 AD-68986.1 A-138724.1UAGAAUGACAGGUGUUUGAdTdT 880 A-138725.1 UCAAACACCUGUCAUUCUAdTdT 1131AD-68987.1 A-138726.1 UGUUUGGAUGGGUGGGGGAdTdT 881 A-138727.1UCCCCCACCCAUCCAAACAdTdT 1132 AD-68988.1 A-138728.1UGGGGGCCUUGUGAUGGGAdTdT 882 A-138729.1 UCCCAUCACAAGGCCCCCAdTdT 1133AD-68989.1 A-138730.1 UGUGAUGGGGGGUAGGCUAdTdT 883 A-138731.1UAGCCUACCCCCCAUCACAdTdT 1134 AD-68990.1 A-138732.1UAGGCUGGCCCAUGUGUGAdTdT 884 A-138733.1 UCACACAUGGGCCAGCCUAdTdT 1135AD-68991.1 A-138734.1 UGUGUGAUCUUGUGGGGUAdTdT 885 A-138735.1UACCCCACAAGAUCACACAdTdT 1136 AD-68992.1 A-138736.1UUGUGGGGUGGAGGGAAGAdTdT 886 A-138737.1 UCUUCCCUCCACCCCACAAdTdT 1137AD-68993.1 A-138738.1 AGGGAAGAGAAUAGCAUGAdTdT 887 A-138739.1UCAUGCUAUUCUCUUCCCUdTdT 1138 AD-68994.1 A-138740.1UAGCAUGAUCCCACUUCCAdTdT 888 A-138741.1 UGGAAGUGGGAUCAUGCUAdTdT 1139AD-68995.1 A-138742.1 ACUUCCCCAUGCUGUGGGAdTdT 889 A-138743.1UCCCACAGCAUGGGGAAGUdTdT 1140 AD-68996.1 A-138744.1CUGUGGGAAGGGGUGCAGUdTdT 890 A-138745.1 ACUGCACCCCUUCCCACAGdTdT 1141AD-68997.1 A-138746.1 GUGCAGUUCGUCCCCAAGAdTdT 891 A-138747.1UCUUGGGGACGAACUGCACdTdT 1142 AD-68998.1 A-138748.1UCCCCAAGAACGACACUGAdTdT 892 A-138749.1 UCAGUGUCGUUCUUGGGGAdTdT 1143AD-69014.1 A-138750.1 ACACUGCCUGUCAGGUGGUdTdT 893 A-138751.1ACCACCUGACAGGCAGUGUdTdT 1144 AD-69015.1 A-138752.1UCAGGUGGUCUGCAAAGAUdTdT 894 A-138753.1 AUCUUUGCAGACCACCUGAdTdT 1145AD-69016.1 A-138754.1 UGCAAAGAUGAUAACCUUAdTdT 895 A-138755.1UAAGGUUAUCAUCUUUGCAdTdT 1146 AD-69017.1 A-138756.1AACCUUGACUACUAAAAACdTdT 896 A-138757.1 GUUUUUAGUAGUCAAGGUUdTdT 1147AD-69018.1 A-138758.1 UAAAAACGUCUCCAUGGCAdTdT 897 A-138759.1UGCCAUGGAGACGUUUUUAdTdT 1148 AD-69019.1 A-138760.1CCAUGGCGGGGGUAACAAAdTdT 898 A-138761.1 UUUGUUACCCCCGCCAUGGdTdT 1149AD-69020.1 A-138762.1 GGUAACAAGAUGAUAAUCUdTdT 899 A-138763.1AGAUUAUCAUCUUGUUACCdTdT 1150 AD-69021.1 A-138764.1UGAUAAUCUACUUAAUUUUdTdT 900 A-138765.1 AAAAUUAAGUAGAUUAUCAdTdT 1151AD-69022.1 A-138766.1 UUAAUUUUAGAACACCUUUdTdT 901 A-138767.1AAAGGUGUUCUAAAAUUAAdTdT 1152 AD-69023.1 A-138768.1ACACCUUUUUCACCUAACUdTdT 902 A-138769.1 AGUUAGGUGAAAAAGGUGUdTdT 1153AD-69024.1 A-138770.1 CCUAACUAAAAUAAUGUUUdTdT 903 A-138771.1AAACAUUAUUUUAGUUAGGdTdT 1154 AD-69025.1 A-138772.1AUAAUGUUUAAAGAGUUUUdTdT 904 A-138773.1 AAAACUCUUUAAACAUUAUdTdT 1155AD-69026.1 A-138774.1 GAGUUUUGUAUAAAAAUGUdTdT 905 A-138775.1ACAUUUUUAUACAAAACUCdTdT 1156 AD-69027.1 A-138776.1AAAAAUGUAAGGAAGCGUUdTdT 906 A-138777.1 AACGCUUCCUUACAUUUUUdTdT 1157AD-69028.1 A-138778.1 GGAAGCGUUGUUACCUGUUdTdT 907 A-138779.1AACAGGUAACAACGCUUCCdTdT 1158 AD-69029.1 A-138780.1UACCUGUUGAAUUUUGUAUdTdT 908 A-138781.1 AUACAAAAUUCAACAGGUAdTdT 1159AD-69030.1 A-138782.1 UUGUAUUAUGUGAAUCAGUdTdT 909 A-138783.1ACUGAUUCACAUAAUACAAdTdT 1160 AD-69031.1 A-138784.1GAAUCAGUGAGAUGUUAGUdTdT 910 A-138785.1 ACUAACAUCUCACUGAUUCdTdT 1161AD-69032.1 A-138786.1 AUGUUAGUAGAAUAAGCCUdTdT 911 A-138787.1AGGCUUAUUCUACUAACAUdTdT 1162 AD-69033.1 A-138788.1AUAAGCCUUAAAAAAAAAAdTdT 912 A-138789.1 UUUUUUUUUUAAGGCUUAUdTdT 1163AD-69034.1 A-138790.1 AAAAAAAAAAAAAUCGGUUdTdT 913 A-138791.1AACCGAUUUUUUUUUUUUUdTdT 1164 AD-69035.1 A-138792.1AAUCGGUUGGGUGCAGUGAdTdT 914 A-138793.1 UCACUGCACCCAACCGAUUdTdT 1165AD-69036.1 A-138794.1 UGCAGUGGCACACGGCUGUdTdT 915 A-138795.1ACAGCCGUGUGCCACUGCAdTdT 1166 AD-69037.1 A-138796.1GGCUGUAAUCCCAGCACUUdTdT 916 A-138797.1 AAGUGCUGGGAUUACAGCCdTdT 1167AD-69038.1 A-138798.1 CAGCACUUUGGGAGGCCAAdTdT 917 A-138799.1UUGGCCUCCCAAAGUGCUGdTdT 1168 AD-69039.1 A-138800.1GAGGCCAAGGUUGGCAGAUdTdT 918 A-138801.1 AUCUGCCAACCUUGGCCUCdTdT 1169AD-69040.1 A-138802.1 UUGGCAGAUCACCUGAGGUdTdT 919 A-138803.1ACCUCAGGUGAUCUGCCAAdTdT 1170 AD-69041.1 A-138804.1CUGAGGUCAGGAGUUCAAAdTdT 920 A-138805.1 UUUGAACUCCUGACCUCAGdTdT 1171AD-69042.1 A-138806.1 GAGUUCAAGACCAGUCUGAdTdT 921 A-138807.1UCAGACUGGUCUUGAACUCdTdT 1172 AD-69043.1 A-138808.1CAGUCUGGCCAACAUAGCAdTdT 922 A-138809.1 UGCUAUGUUGGCCAGACUGdTdT 1173AD-69044.1 A-138810.1 AACAUAGCAAAACCCUGUAdTdT 923 A-138811.1UACAGGGUUUUGCUAUGUUdTdT 1174 AD-69045.1 A-138812.1CCCUGUCUCUACUAAAAAUdTdT 924 A-138813.1 AUUUUUAGUAGAGACAGGGdTdT 1175AD-69046.1 A-138814.1 CUAAAAAUACAAAAAUUAUdTdT 925 A-138815.1AUAAUUUUUGUAUUUUUAGdTdT 1176 AD-69047.1 A-138816.1AAAAUUAUCUGGGCAUGGUdTdT 926 A-138817.1 ACCAUGCCCAGAUAAUUUUdTdT 1177AD-69048.1 A-138818.1 GGCAUGGUGGUGCAUGCCUdTdT 927 A-138819.1AGGCAUGCACCACCAUGCCdTdT 1178 AD-69049.1 A-138820.1CAUGCCUGUAAUCCCAGCUdTdT 928 A-138821.1 AGCUGGGAUUACAGGCAUGdTdT 1179AD-69050.1 A-138822.1 AAUCCCAGCUAUUCGGAAAdTdT 929 A-138823.1UUUCCGAAUAGCUGGGAUUdTdT 1180 AD-69051.1 A-138824.1UUCGGAAGGCUGAGGCAGAdTdT 930 A-138825.1 UCUGCCUCAGCCUUCCGAAdTdT 1181AD-69052.1 A-138826.1 AGGCAGGAGAAUCACUUGAdTdT 931 A-138827.1UCAAGUGAUUCUCCUGCCUdTdT 1182 AD-69053.1 A-138828.1AUCACUUGAACCCAGGAGAdTdT 932 A-138829.1 UCUCCUGGGUUCAAGUGAUdTdT 1183AD-69054.1 A-138830.1 CAGGAGGCGGAGGUUGCGAdTdT 933 A-138831.1UCGCAACCUCCGCCUCCUGdTdT 1184 AD-69055.1 A-138832.1GUUGCGGUGAGCUGAGAUUdTdT 934 A-138833.1 AAUCUCAGCUCACCGCAACdTdT 1185AD-69056.1 A-138834.1 CUGAGAUUGCACCAUUUCAdTdT 935 A-138835.1UGAAAUGGUGCAAUCUCAGdTdT 1186 AD-69057.1 A-138836.1CACCAUUUCAUUCCAGCCUdTdT 936 A-138837.1 AGGCUGGAAUGAAAUGGUGdTdT 1187AD-69058.1 A-138838.1 CAGCCUGGGCAACAUGAGUdTdT 937 A-138839.1ACUCAUGUUGCCCAGGCUGdTdT 1188 AD-69059.1 A-138840.1AACAUGAGUGAAAGUCUGAdTdT 938 A-138841.1 UCAGACUUUCACUCAUGUUdTdT 1189AD-69060.1 A-138842.1 AGUCUGACUCAAAAAAAAAdTdT 939 A-138843.1UUUUUUUUUGAGUCAGACUdTdT 1190 AD-69061.1 A-138844.1AAAAAAAAAAAAUUUAAAAdTdT 940 A-138845.1 UUUUAAAUUUUUUUUUUUUdTdT 1191AD-69062.1 A-138846.1 UUUAAAAAACAAAAUAAUAdTdT 941 A-138847.1UAUUAUUUUGUUUUUUAAAdTdT 1192 AD-69063.1 A-138848.1AAAAUAAUCUAGUGUGCAAdTdT 942 A-138849.1 UUGCACACUAGAUUAUUUUdTdT 1193AD-69064.1 A-138850.1 GUGUGCAGGGCAUUCACCUdTdT 943 A-138851.1AGGUGAAUGCCCUGCACACdTdT 1194 AD-69065.1 A-138852.1CAUUCACCUCAGCCCCCCAdTdT 944 A-138853.1 UGGGGGGCUGAGGUGAAUGdTdT 1195AD-69066.1 A-138854.1 CCCCCAGGCAGGAGCCAAAdTdT 945 A-138855.1UUUGGCUCCUGCCUGGGGGdTdT 1196 AD-69067.1 A-138856.1AGGAGCCAAGCACAGCAGAdTdT 946 A-138857.1 UCUGCUGUGCUUGGCUCCUdTdT 1197AD-69068.1 A-138858.1 ACAGCAGGAGCUUCCGCCUdTdT 947 A-138859.1AGGCGGAAGCUCCUGCUGUdTdT 1198 AD-69069.1 A-138860.1UUCCGCCUCCUCUCCACUAdTdT 948 A-138861.1 UAGUGGAGAGGAGGCGGAAdTdT 1199AD-69070.1 A-138862.1 UCCACUGGAGCACACAACUdTdT 949 A-138863.1AGUUGUGUGCUCCAGUGGAdTdT 1200 AD-69071.1 A-138864.1ACACAACUUGAACCUGGCUdTdT 950 A-138865.1 AGCCAGGUUCAAGUUGUGUdTdT 1201AD-69072.1 A-138866.1 AACCUGGCUUAUUUUCUGAdTdT 951 A-138867.1UCAGAAAAUAAGCCAGGUUdTdT 1202 AD-69073.1 A-138868.1UUCUGCAGGGACCAGCCCAdTdT 952 A-138869.1 UGGGCUGGUCCCUGCAGAAdTdT 1203AD-69074.1 A-138870.1 CCAGCCCCACAUGGUCAGUdTdT 953 A-138871.1ACUGACCAUGUGGGGCUGGdTdT 1204 AD-69076.1 A-138874.1UUUCUCCCCAUGUGUGGCAdTdT 954 A-138875.1 UGCCACACAUGGGGAGAAAdTdT 1205AD-69077.1 A-138878.1 AGAGAGUGUAGAAAUAAAGdTdT 955 A-138879.1CUUUAUUUCUACACUCUCUdTdT 1206

TABLE 6 PNPLA3 Single Dose Screen in Hep3B Cells Data are expressed aspercent message remaining relative to AD-1955, a non-targeting controlduplex. Duplex Name 20nM_AVG 20nM_STDEV AD-68792.1 106.53 9.20AD-68793.1 90.00 15.49 AD-68794.1 55.08 11.00 AD-68795.1 77.11 20.01AD-68796.1 71.27 7.67 AD-68797.1 53.86 1.23 AD-68798.1 76.58 29.01AD-68799.1 61.71 33.05 AD-68800.1 84.27 23.89 AD-68801.1 58.51 23.74AD-68802.1 48.71 3.47 AD-68803.1 52.69 8.91 AD-68804.1 56.10 9.15AD-68805.1 56.10 29.42 AD-68806.1 52.09 4.59 AD-68807.1 69.70 8.99AD-68808.1 83.88 7.42 AD-68809.1 67.95 17.68 AD-68810.1 52.56 22.52AD-68811.1 73.72 12.31 AD-68812.1 70.61 22.53 AD-68813.1 63.84 17.87AD-68814.1 56.57 4.47 AD-68815.1 50.13 8.52 AD-68816.1 91.97 18.35AD-68817.1 49.93 3.88 AD-68818.1 74.08 23.36 AD-68819.1 74.87 26.63AD-68820.1 59.47 18.45 AD-68821.1 81.26 37.48 AD-68822.1 63.53 8.85AD-68823.1 49.54 9.87 AD-68824.1 87.65 12.09 AD-68825.1 107.35 28.04AD-68826.1 100.30 41.14 AD-68827.1 62.87 13.83 AD-68828.1 63.50 18.27AD-68829.1 40.09 7.84 AD-68830.1 32.34 4.08 AD-68831.1 46.76 7.68AD-68832.1 78.43 16.54 AD-68833.1 125.50 3.95 AD-68834.1 112.62 6.58AD-68835.1 97.95 2.75 AD-68836.1 117.74 52.61 AD-68837.1 40.88 4.78AD-68838.1 91.56 20.60 AD-68839.1 59.94 8.72 AD-68840.1 79.60 5.47AD-68841.1 39.27 7.63 AD-68842.1 88.01 18.52 AD-68843.1 56.54 5.00AD-68844.1 51.39 10.45 AD-68845.1 59.74 4.73 AD-68846.1 54.54 14.99AD-68847.1 94.59 4.92 AD-68848.1 92.93 14.62 AD-68849.1 74.04 7.30AD-68850.1 110.43 16.00 AD-68851.1 61.74 5.05 AD-68852.1 63.66 21.55AD-68853.1 49.87 6.96 AD-68854.1 47.59 6.65 AD-68855.1 73.32 11.72AD-68856.1 106.96 18.30 AD-68857.1 123.97 37.64 AD-68858.1 60.42 4.02AD-68859.1 81.29 14.80 AD-68860.1 68.06 17.18 AD-68861.1 89.36 8.04AD-68862.1 62.20 19.06 AD-68863.1 78.73 13.90 AD-68864.1 71.54 10.06AD-68865.1 79.83 18.10 AD-68866.1 90.56 9.37 AD-68867.1 76.38 25.29AD-68868.1 106.98 9.34 AD-68869.1 80.37 23.99 AD-68870.1 62.13 19.67AD-68871.1 82.72 12.73 AD-68872.1 78.95 8.19 AD-68873.1 71.57 3.92AD-68874.1 118.98 25.63 AD-68875.1 82.64 10.49 AD-68876.1 106.02 17.93AD-68877.1 47.83 10.91 AD-68878.1 68.77 9.18 AD-68879.1 92.72 13.76AD-68880.1 121.48 13.92 AD-68881.1 99.48 5.55 AD-68882.1 90.81 8.65AD-68883.1 88.48 16.79 AD-68884.1 126.40 27.97 AD-68885.1 79.31 13.00AD-68905.1 59.11 11.11 AD-68906.1 62.09 23.14 AD-68907.1 91.47 18.05AD-68908.1 69.14 6.98 AD-68909.1 57.61 0.00 AD-68910.1 53.43 6.58AD-68911.1 49.21 4.14 AD-68912.1 55.29 11.49 AD-68913.1 60.30 3.64AD-68914.1 64.75 6.02 AD-68915.1 77.72 5.80 AD-68916.1 51.18 6.74AD-68917.1 61.47 5.86 AD-68918.1 63.11 5.98 AD-68919.1 58.34 10.77AD-68920.1 50.34 15.08 AD-68921.1 82.27 16.34 AD-68922.1 76.90 14.57AD-68923.1 73.35 4.56 AD-68924.1 54.86 10.39 AD-68925.1 79.75 12.87AD-68926.1 67.63 6.30 AD-68927.1 70.30 11.39 AD-68928.1 71.51 12.69AD-68929.1 66.30 18.72 AD-68930.1 71.14 21.97 AD-68931.1 71.05 8.92AD-68932.1 77.92 4.34 AD-68933.1 101.43 16.21 AD-68934.1 53.20 9.90AD-68935.1 99.51 9.41 AD-68936.1 49.46 8.03 AD-68937.1 57.51 13.53AD-68938.1 88.20 15.56 AD-68939.1 74.32 14.17 AD-68940.1 77.38 17.70AD-68941.1 76.90 11.02 AD-68942.1 86.39 14.95 AD-68943.1 110.51 36.72AD-68944.1 66.71 10.77 AD-68945.1 70.73 19.44

Example 3. iRNA Synthesis Source of Reagents

Where the source of a reagent is not specifically given herein, suchreagent can be obtained from any supplier of reagents for molecularbiology at a quality/purity standard for application in molecularbiology.

Transcripts

siRNA Design

A set of iRNAs targeting the human PNPLA3 (human: NCBI refseqIDNM_025225; NCBI GeneID: 80339), as well as toxicology-species PNPLA3orthologs (cynomolgus monkey: XM_005567051; mouse: NM_054088; rat:XM_006242109) were designed using custom R and Python scripts. The humanPNPLA3 REFSEQ mRNA has a length of 2805 bases. The rationale and methodfor the set of iRNA designs is as follows: the predicted efficacy forevery potential 19mer iRNA from position 174 through position 2805 (thecoding region and 3′ UTR) was determined with a linear model derived thedirect measure of mRNA knockdown from more than 20,000 distinct iRNAdesigns targeting a large number of vertebrate genes. Subsets of thePNPLA3 iRNAs were designed with perfect or near-perfect matches betweenhuman and cynomolgus monkey. A further subset was designed with perfector near-perfect matches to mouse and rat PNPLA3 orthologs. A furthersubset was designed with perfect or near-perfect matches to human,cynomolgus monkey, mouse, and rat PNPLA3 orthologs. For each strand ofthe iRNA, a custom Python script was used in a brute force search tomeasure the number and positions of mismatches between the iRNA and allpotential alignments in the target species transcriptome. Extra weightwas given to mismatches in the seed region, defined here as positions2-9 of the antisense oligonucleotide, as well the cleavage site of theiRNA, defined here as positions 10-11 of the antisense oligonucleotide.The relative weight of the mismatches was 2.8, 1.2 and 1 for seedmismatches, cleavage site, and other positions up through antisenseposition 19, respectively. Mismatches in the first position wereignored. A specificity score was calculated for each strand by summingthe value of each weighted mismatch. Preference was given to iRNAs whoseantisense score in human and cynomolgus monkey was >=3.0 and predictedefficacy was >=70% knockdown of the PNPLA3 transcript.

A detailed list of the unmodified PNPLA3 sense and antisense strandsequences is shown in Table 7. A detailed list of the modified PNPLA3sense and antisense strand sequences is shown in Table 8. Table 9provides the mRNA target sequences of the modified PNPLA3 agentsprovided in Table 8

In Vitro Screening

Cell Culture and Transfections

Hep3b cells, mouse and cynomolgus monkey primary hepatocytes weretransfected, independently, by adding 4.9 μl of Opti-MEM plus 0.1 μl ofLipofectamine RNAiMax per well (Invitrogen, Carlsbad Calif. cat#13778-150) to 5 μl of iRNA duplexes per well into a 384-well plate andincubated at room temperature for 15 minutes. Forty μl of EMEMcontaining about 5×10³ Hep3b cells, or 40 μl of William's mediacontaining about 5×10³ primary mouse hepatocytes or primary cynomolgusmonkey hepatocytes were then added to the iRNA mixture. Cells wereincubated for 24 hours prior to RNA purification. Two single doseexperiments were performed at 10 nM and 0.1 nM final duplexconcentrations and dose response experiments were performed over a rangeof doses from 10 nM to 36 fM final duplex concentration over 8, 6-folddilutions.

Total RNA Isolation Using DYNABEADS mRNA Isolation Kit

RNA was isolated using an automated protocol on a BioTek-EL406 platformusing DYNABEADs (Invitrogen, cat#61012). Briefly, 50 μl of Lysis/BindingBuffer and 25 μl of lysis buffer containing 3 μl of magnetic beads wereadded to the plate with cells. Plates were incubated on anelectromagnetic shaker for 10 minutes at room temperature and thenmagnetic beads were captured and the supernatant was removed. Bead-boundRNA was then washed 2 times with 150 μl Wash Buffer A and once with WashBuffer B. Beads were then washed with 150 μl Elution Buffer, re-capturedand supernatant removed.

cDNA Synthesis Using ABI High Capacity cDNA Reverse Transcription Kit(Applied Biosystems, Foster City, Calif., Cat #4368813)

Ten μl of a master mix containing 1 μl 10× Buffer, 0.4 μl 25× dNTPs, 1μl 10× Random primers, 0.5 μl Reverse Transcriptase, 0.5 μl RNaseinhibitor and 6.6 μl of H2O per reaction was added to RNA isolatedabove. Plates were sealed, mixed, and incubated on an electromagneticshaker for 10 minutes at room temperature, followed by 2 hours 37° C.

Real Time PCR

Two μl of cDNA were added to a master mix containing 0.5 μl of GAPDHTaqMan Probe (Hs99999905), 0.5 μl PNPLA3 probe and 5 μl Lightcycler 480probe master mix (Roche Cat #04887301001) per well in a 384 well plates(Roche cat #04887301001). Hep3b qPCR was probed with GAPDH TaqMan Probe(Hs99999905) and PNPLA3 probe (Hs00228747_ml). Mouse primary hepatocytesqPCR was probed with Mouse GAPDH TaqMan Probe (Mm03302249_gl) and MousePNPLA3 Taqman Probe (Mm00504420_ml). Cynomolgus monkey primaryhepatocytes qPCR was probed with custom Cynomolgus GAPDH probe andcustom Cynomolgus PNPLA3 probe (5′-AGCGGGGUCUGAAGUCAU-3′(SEQ ID NO:1207)). Real time PCR was done in a LightCycler480 Real Time PCR system(Roche) using the ΔΔCt(RQ) assay. Each duplex was tested in fourindependent transfections.

To calculate relative fold change, real time data were analyzed usingthe ΔΔCt method and normalized to assays performed with cellstransfected with 20 nM AD-1955, a non-targeting control iRNA, or mocktransfected cells. The sense and antisense sequences of AD-1955 are:

SENSE: (SEQ ID NO: 1208) cuuAcGcuGAGuAcuucGAdTsdT; ANTISENSE: (SEQ IDNO: 1209) UCGAAGuACUcAGCGuAAGdTsdT.

In Vitro Dual-Glo® Screening

Cell Culture and Transfections

Cos7 cells (ATCC, Manassas, Va.) were grown to near confluence at 37° C.in an atmosphere of 5% CO2 in DMEM (ATCC) supplemented with 10% FBS,before being released from the plate by trypsinization. Dual-Glo®Luciferase constructs were generated in the psiCHECK2 plasmid andcontained approximately 2.8 kb (human) PNPLA3 sequences (SEQ ID NO:18).Dual-luciferase plasmids were co-transfected with siRNA into 15×10³cells using Lipofectamine RNAiMax (Invitrogen, Carlsbad Calif. cat#13778-150). For each well of a 96 well plate, 0.2 μl of Lipofectaminewere added to 10 ng of plasmid vector and iRNA in 15 μl of Opti-MEM andallowed to complex at room temperature for 15 minutes. The mixture wasthen added to the cells resuspended in 80 μl of fresh complete media.Cells were incubated for 48 hours before luciferase was measured. Twosingle dose experiments were performed at 10 nM and 0.1 nM final duplexconcentrations and dose response experiments were performed over a rangeof doses from 10 nM to 36 fM final duplex concentration over 8, 6-folddilutions.

Dual-Glo® Luciferase Assay

Firty-eight hours after the siRNAs were transfected, Firefly(transfection control) and Renilla (fused to PNPLA3 target sequence in3′ UTR) luciferase were measured. First, media was removed from cells.Then Firefly luciferase activity was measured by adding 75 μl ofDual-Glo® Luciferase Reagent equal to the culture medium volume to eachwell and mix. The mixture was incubated at room temperature for 30minutes before luminescense (500 nm) was measured on a Spectramax(Molecular Devices) to detect the Firefly luciferase signal. Renillaluciferase activity was measured by adding 75 μl of room temperature ofDual-Glo® Stop & Glo® Reagent to each well and the plates were incubatedfor 10-15 minutes before luminescence was again measured to determinethe Renilla luciferase signal. The Dual-Glo® Stop & Glo® Reagent,quenches the firefly luciferase signal and sustained luminescence forthe Renilla luciferase reaction. iRNA activity was determined bynormalizing the Renilla (PNPLA3) signal to the Firefly (control) signalwithin each well. The magnitude of siRNA activity was then assessedrelative to cells that were transfected with the same vector but werenot treated with iRNA or were treated with a non-targeting iRNA. Alltransfections were done in triplicate.

Table 10 shows the results of a single 10 nM dose screen and a single0.1 nM dose screen in Hep3B cells transfected with the indicatedmodified RNAi agents. Data are expressed as percent of message remainingrelative to untreated cells.

Table 11 shows the results of a single 10 nM dose screen and a single0.1 nM dose screen in Cynomolgus monkey primary hepatocytes transfectedwith the indicated modified RNAi agents. Data are expressed as percentof message remaining relative to untreated cells.

Table 12 shows the dose response in primary Cynomolgus monkeyhepatocytes transfected with the indicated modified RNAi agents. Theindicated IC₅₀ values represent the IC₅₀ values relative to untreatedcells.

Table 13 shows the results of a single 10 nM dose screen and a single0.1 nM dose screen in mouse primary hepatocytes transfected with theindicated modified RNAi agents. Data are expressed as percent of messageremaining relative to untreated cells.

Table 14 shows the dose response in primary mouse hepatocytestransfected with the indicated modified RNAi agents. The indicated IC₅₀values represent the IC₅₀ values relative to untreated cells.

Table 15 shows the results of a single 10 nM dose screen and a single0.1 nM dose screen in Cos7 cells transfected with the indicated modifiedPNPLA3 RNAi agents. Data are expressed as percent of mRNA remainingrelative to negative control.

Table 16 shows the dose response in Cos7 cells transfected with theindicated modified RNAi agents. The indicated IC₅₀ values represent theIC₅₀ values relative to untreated cells.

TABLE 7 PNPLA3 Unmodified Sequences Duplex Sense Oligo Start inAntisense Start in Name Name Sense Sequence 5′ to 3′ SEQ ID NO SEQ IDNO: 1 Oligo Name Antisense Sequence 5′ to 3′ SEQ ID NO SEQ ID NO: 1Range AD-67524.1 A-135231.1 GGCUUCCUGGGCUUCUACCAA 1210 219 A-135232.1UUGGUAGAAGCCCAGGAAGCCGC 1300 217 217-239 AD-67611.1 A-135409.1UUGUGCGGAAGGCCAGGAGUA 1211 388 A-135410.1 UACUCCUGGCCUUCCGCACAAGA 1301386 386-408 AD-67601.1 A-135389.1 AAGGCCAGGAGUCGGAACAUU 1212 396A-135390.1 AAUGUUCCGACUCCUGGCCUUCC 1302 394 394-416 AD-67579.1A-135341.1 AGGCCAGGAGUCGGAACAUUA 1213 397 A-135342.1UAAUGUUCCGACUCCUGGCCUUC 1303 395 395-417 AD-67588.1 A-135361.1AACGUUCUGGUGUCUGACUUU 1214 549 A-135362.1 AAAGUCAGACACCAGAACGUUUU 1304547 547-569 AD-67602.1 A-135391.1 CUGACUUUCGGUCCAAAGACA 1215 562A-135392.1 UGUCUUUGGACCGAAAGUCAGAC 1305 560 560-582 AD-67570.1A-135323.1 UCGGUCCAAAGACGAAGUCGU 1216 569 A-135324.1ACGACUUCGUCUUUGGACCGAAA 1306 567 567-589 AD-67553.1 A-135289.1CGGUCCAAAGACGAAGUCGUA 1217 570 A-135290.1 UACGACUUCGUCUUUGGACCGAA 1307568 568-590 AD-67612.1 A-135411.1 GACGAAGUCGUGGAUGCCUUA 1218 579A-135412.1 UAAGGCAUCCACGACUUCGUCUU 1308 577 577-599 AD-67525.1A-135233.1 CUUGGUAUGUUCCUGCUUCAU 1219 596 A-135234.1AUGAAGCAGGAACAUACCAAGGC 1309 594 594-616 AD-67526.1 A-135235.1GGCCUUAUCCCUCCUUCCUUA 1220 630 A-135236.1 UAAGGAAGGAGGGAUAAGGCCAC 1310628 628-650 AD-67592.1 A-135371.1 AGGAGUGAGUGACAACGUACA 1221 674A-135372.1 UGUACGUUGUCACUCACUCCUCC 1311 672 672-694 AD-67578.1A-135339.1 GUGAGUGACAACGUACCCUUA 1222 678 A-135340.1UAAGGGUACGUUGUCACUCACUC 1312 676 676-698 AD-67555.1 A-135293.1UGAUGCCAAAACAACCAUCAA 1223 701 A-135294.1 UUGAUGGUUGUUUUGGCAUCAAU 1313699 699-721 AD-67577.1 A-135337.1 CGACAUCUGCCCUAAAGUCAA 1224 746A-135338.1 UUGACUUUAGGGCAGAUGUCGUA 1314 744 744-766 AD-67594.1A-135375.1 ACGAACUUUCUUCAUGUGGAA 1225 771 A-135376.1UUCCACAUGAAGAAAGUUCGUGG 1315 769 769-791 AD-67568.1 A-135319.1GCACAGGGAACCUCUACCUUA 1226 817 A-135320.1 UAAGGUAGAGGUUCCCUGUGCAG 1316815 815-837 AD-67550.1 A-135283.1 UGCUGGGAGAGAUAUGCCUUA 1227 871A-135284.1 UAAGGCAUAUCUCUCCCAGCACC 1317 869 869-891 AD-67586.1A-135357.1 UGGGAGAGAUAUGCCUUCGAA 1228 874 A-135358.1UUCGAAGGCAUAUCUCUCCCAGC 1318 872 872-894 AD-67576.1 A-135335.1AGAGAUAUGCCUUCGAGGAUA 1229 878 A-135336.1 UAUCCUCGAAGGCAUAUCUCUCC 1319876 876-898 AD-67563.1 A-135309.1 AUAUGCCUUCGAGGAUAUUUA 1230 882A-135310.1 UAAAUAUCCUCGAAGGCAUAUCU 1320 880 880-902 AD-67552.1A-135287.1 UGCCUUCGAGGAUAUUUGGAU 1231 885 A-135288.1AUCCAAAUAUCCUCGAAGGCAUA 1321 883 883-905 AD-67608.1 A-135403.1AUUCAGGUUCUUGGAAGAGAA 1232 908 A-135404.1 UUCUCUUCCAAGAACCUGAAUGC 1322906 906-928 AD-67593.1 A-135373.1 CAUCCUCAGAAGGGAUGGAUA 1233 964A-135374.1 UAUCCAUCCCUUCUGAGGAUGAC 1323 962 962-984 AD-67609.1A-135405.1 CCUGCCCUGGGAUGAGAGCAU 1234 1100 A-135406.1AUGCUCUCAUCCCAGGGCAGGAU 1324 1098 1098-1120 AD-67597.1 A-135381.1GACAAAGGUGGAUACAUGAGA 1235 1173 A-135382.1 UCUCAUGUAUCCACCUUUGUCUU 13251171 1171-1193 AD-67587.1 A-135359.1 AAAGGUGGAUACAUGAGCAAA 1236 1176A-135360.1 UUUGCUCAUGUAUCCACCUUUGU 1326 1174 1174-1196 AD-67559.1A-135301.1 GUGGAUACAUGAGCAAGAUUU 1237 1180 A-135302.1AAAUCUUGCUCAUGUAUCCACCU 1327 1178 1178-1200 AD-67561.1 A-135305.1UGGAUACAUGAGCAAGAUUUA 1238 1181 A-135306.1 UAAAUCUUGCUCAUGUAUCCACC 13281179 1179-1201 AD-67551.1 A-135285.1 AUACAUGAGCAAGAUUUGCAA 1239 1184A-135286.1 UUGCAAAUCUUGCUCAUGUAUCC 1329 1182 1182-1204 AD-67591.1A-135369.1 AGCAAGAUUUGCAACUUGCUA 1240 1191 A-135370.1UAGCAAGUUGCAAAUCUUGCUCA 1330 1189 1189-1211 AD-67583.1 A-135351.1CAAGAUUUGCAACUUGCUACA 1241 1193 A-135352.1 UGUAGCAAGUUGCAAAUCUUGCU 13311191 1191-1213 AD-67585.1 A-135355.1 UGCAACUUGCUACCCAUUAGA 1242 1200A-135356.1 UCUAAUGGGUAGCAAGUUGCAAA 1332 1198 1198-1220 AD-67589.1A-135363.1 AACUUGCUACCCAUUAGGAUA 1243 1203 A-135364.1UAUCCUAAUGGGUAGCAAGUUGC 1333 1201 1201-1223 AD-67595.1 A-135377.1GCCAUUGCGAUUGUCCAGAGA 1244 1266 A-135378.1 UCUCUGGACAAUCGCAAUGGCAG 13341264 1264-1286 AD-67580.1 A-135343.1 GAUUGUCCAGAGACUGGUGAA 1245 1274A-135344.1 UUCACCAGUCUCUGGACAAUCGC 1335 1272 1272-1294 AD-67573.1A-135329.1 UGGUGACAUGGCUUCCAGAUA 1246 1288 A-135330.1UAUCUGGAAGCCAUGUCACCAGU 1336 1286 1286-1308 AD-67600.1 A-135387.1CCAGAUAUGCCCGACGAUGUA 1247 1302 A-135388.1 UACAUCGUCGGGCAUAUCUGGAA 13371300 1300-1322 AD-67603.1 A-135393.1 GUGGUUGCAGUGGGUGACCUA 1248 1325A-135394.1 UAGGUCACCCACUGCAACCACAG 1338 1323 1323-1345 AD-67598.1A-135383.1 AGGUCCCAAAUGCCAGUGAGA 1249 1389 A-135384.1UCUCACUGGCAUUUGGGACCUGG 1339 1387 1387-1409 AD-67564.1 A-135311.1UCACUUGAGGAGGCGAGUCUA 1250 1621 A-135312.1 UAGACUCGCCUCCUCAAGUGACU 13401619 1619-1641 AD-67574.1 A-135331.1 AGUCUAGCAGAUUCUUUCAGA 1251 1636A-135332.1 UCUGAAAGAAUCUGCUAGACUCG 1341 1634 1634-1656 AD-67590.1A-135365.1 AUUCUUUCAGAGGUGCUAAAA 1252 1646 A-135366.1UUUUAGCACCUCUGAAAGAAUCU 1342 1644 1644-1666 AD-67572.1 A-135327.1UUCUUUCAGAGGUGCUAAAGU 1253 1647 A-135328.1 ACUUUAGCACCUCUGAAAGAAUC 13431645 1645-1667 AD-67582.1 A-135349.1 GUGCUAAAGUUUCCCAUCUUU 1254 1658A-135350.1 AAAGAUGGGAAACUUUAGCACCU 1344 1656 1656-1678 AD-67607.1A-135401.1 UCCCAUCUUUGUGCAGCUACA 1255 1669 A-135402.1UGUAGCUGCACAAAGAUGGGAAA 1345 1667 1667-1689 AD-67571.1 A-135325.1CUGCCUGUGACGUGGAGGAUA 1256 1713 A-135326.1 UAUCCUCCACGUCACAGGCAGGG 13461711 1711-1733 AD-67599.1 A-135385.1 UGUGACGUGGAGGAUCCCAGA 1257 1718A-135386.1 UCUGGGAUCCUCCACGUCACAGG 1347 1716 1716-1738 AD-67554.1A-135291.1 UCUGAGCUGAGUUGGUUUUAU 1258 1740 A-135292.1AUAAAACCAACUCAGCUCAGAGG 1348 1738 1738-1760 AD-67549.1 A-135281.1AGUUGGUUUUAUGAAAAGCUA 1259 1749 A-135282.1 UAGCUUUUCAUAAAACCAACUCA 13491747 1747-1769 AD-67567.1 A-135317.1 UUGGUUUUAUGAAAAGCUAGA 1260 1751A-135318.1 UCUAGCUUUUCAUAAAACCAACU 1350 1749 1749-1771 AD-67558.1A-135299.1 GGUUUUAUGAAAAGCUAGGAA 1261 1753 A-135300.1UUCCUAGCUUUUCAUAAAACCAA 1351 1751 1751-1773 AD-67569.1 A-135321.1GUUUUAUGAAAAGCUAGGAAA 1262 1754 A-135322.1 UUUCCUAGCUUUUCAUAAAACCA 13521752 1752-1774 AD-67548.1 A-135279.1 UUUUAUGAAAAGCUAGGAAGA 1263 1755A-135280.1 UCUUCCUAGCUUUUCAUAAAACC 1353 1753 1753-1775 AD-67566.1A-135315.1 UAUGAAAAGCUAGGAAGCAAA 1264 1758 A-135316.1UUUGCUUCCUAGCUUUUCAUAAA 1354 1756 1756-1778 AD-67613.1 A-135413.1CGUUAAUUCAGCUGGUUGGGA 1265 1827 A-135414.1 UCCCAACCAGCUGAAUUAACGCA 13551825 1825-1847 AD-67610.1 A-135407.1 GUUAAUUCAGCUGGUUGGGAA 1266 1828A-135408.1 UUCCCAACCAGCUGAAUUAACGC 1356 1826 1826-1848 AD-67556.1A-135295.1 AGCUGGUUGGGAAAUGACACA 1267 1836 A-135296.1UGUGUCAUUUCCCAACCAGCUGA 1357 1834 1834-1856 AD-67581.1 A-135345.1CCUAUUAAUGGUCAGACUGUU 1268 1900 A-135346.1 AACAGUCUGACCAUUAAUAGGGC 13581898 1898-1920 AD-67560.1 A-135303.1 CUAUUAAUGGUCAGACUGUUA 1269 1901A-135304.1 UAACAGUCUGACCAUUAAUAGGG 1359 1899 1899-1921 AD-67596.1A-135379.1 GCUGGCCCAUGUGUGAUCUUA 1270 1984 A-135380.1UAAGAUCACACAUGGGCCAGCCU 1360 1982 1982-2004 AD-67557.1 A-135297.1UGGCCCAUGUGUGAUCUUGUA 1271 1986 A-135298.1 UACAAGAUCACACAUGGGCCAGC 13611984 1984-2006 AD-67584.1 A-135353.1 CCUAACUAAAAUAAUGUUUAA 1272 2190A-135354.1 UUAAACAUUAUUUUAGUUAGGUG 1362 2188 2188-2210 AD-67575.1A-135333.1 UUACCUGUUGAAUUUUGUAUU 1273 2243 A-135334.1AAUACAAAAUUCAACAGGUAACA 1363 2241 2241-2263 AD-67605.1 A-135397.1ACCUGUUGAAUUUUGUAUUAU 1274 2245 A-135398.1 AUAAUACAAAAUUCAACAGGUAA 13642243 2243-2265 AD-67562.1 A-135307.1 UGUAUUAUGUGAAUCAGUGAA 1275 2258A-135308.1 UUCACUGAUUCACAUAAUACAAA 1365 2256 2256-2278 AD-67606.1A-135399.1 UAUGUGAAUCAGUGAGAUGUU 1276 2263 A-135400.1AACAUCUCACUGAUUCACAUAAU 1366 2261 2261-2283 AD-67604.1 A-135395.1GAUGUUAGUAGAAUAAGCCUU 1277 2278 A-135396.1 AAGGCUUAUUCUACUAACAUCUC 13672276 2276-2298 AD-67565.1 A-135313.1 AUGUUAGUAGAAUAAGCCUUA 1278 2279A-135314.1 UAAGGCUUAUUCUACUAACAUCU 1368 2277 2277-2299 AD-67529.1A-135241.1 UAUAAUGGAGAUCCUCAUGGA 1279 250 A-135242.1UCCAUGAGGAUCUCCAUUAUACG 1369 248 248-270 AD-67533.1 A-135249.1GUGUCUGAGUUCCAUUCCAAA 1280 443 A-135250.1 UUUGGAAUGGAACUCAGACACCA 1370441 441-463 AD-67537.1 A-135257.1 AGUCGUGGAUGCCCUGGUGUA 1281 469A-135258.1 UACACCAGGGCAUCCACGACUUC 1371 467 467-489 AD-67546.1A-135275.1 UGCUAUCAAGGGUACCUGGAA 1282 770 A-135276.1UUCCAGGUACCCUUGAUAGCACA 1372 768 768-790 AD-67547.1 A-135277.1UCCCAGGUUUGUGCCCGAAUA 1283 1163 A-135278.1 UAUUCGGGCACAAACCUGGGAUG 13731161 1161-1183 AD-67543.1 A-135269.1 CCAGGUUUGUGCCCGAAUGAA 1284 1165A-135270.1 UUCAUUCGGGCACAAACCUGGGA 1374 1163 1163-1185 AD-67541.1A-135265.1 UGGAGCAACAGUGUCUAGAUA 1285 3032 A-135266.1UAUCUAGACACUGUUGCUCCAGA 1375 3030 3030-3052 AD-67535.1 A-135253.1CUUUUGGAGGCAGCUAGGAAA 1286 3106 A-135254.1 UUUCCUAGCUGCCUCCAAAAGUA 13763104 3104-3126 AD-67530.1 A-135243.1 AAGACAAUGAUUUGGUGUUUA 1287 3226A-135244.1 UAAACACCAAAUCAUUGUCUUUG 1377 3224 3224-3246 AD-67542.1A-135267.1 GACAAUGAUUUGGUGUUUAGA 1288 3228 A-135268.1UCUAAACACCAAAUCAUUGUCUU 1378 3226 3226-3248 AD-67528.1 A-135239.1CAAUGAUUUGGUGUUUAGAAA 1289 3230 A-135240.1 UUUCUAAACACCAAAUCAUUGUC 13793228 3228-3250 AD-67527.1 A-135237.1 UGCCAGAUAACUUAUUACUUU 1290 3447A-135238.1 AAAGUAAUAAGUUAUCUGGCAGG 1380 3445 3445-3467 AD-67544.1A-135271.1 ACACCUUUGGCUCUUACUAAU 1291 3473 A-135272.1AUUAGUAAGAGCCAAAGGUGUCC 1381 3471 3471-3493 AD-67532.1 A-135247.1CUGGCUCCAAAUCUUUGUAUA 1292 3629 A-135248.1 UAUACAAAGAUUUGGAGCCAGUG 13823627 3627-3649 AD-67534.1 A-135251.1 UGGCUCCAAAUCUUUGUAUAA 1293 3630A-135252.1 UUAUACAAAGAUUUGGAGCCAGU 1383 3628 3628-3650 AD-67538.1A-135259.1 CCAAAUCUUUGUAUAGUCAUA 1294 3635 A-135260.1UAUGACUAUACAAAGAUUUGGAG 1384 3633 3633-3655 AD-67545.1 A-135273.1AGAGACAAAGUGUCUAGGCUA 1295 3986 A-135274.1 UAGCCUAGACACUUUGUCUCUAG 13853984 3984-4006 AD-67539.1 A-135261.1 AAGUGUCUAGGCUACACAGAA 1296 3993A-135262.1 UUCUGUGUAGCCUAGACACUUUG 1386 3991 3991-4013 AD-67540.1A-135263.1 AGAAACUUCUGCCUUGCUUUA 1297 4283 A-135264.1UAAAGCAAGGCAGAAGUUUCUAC 1387 4281 4281-4303 AD-67531.1 A-135245.1GAAGGAUUGAAUGGAUACACA 1298 4540 A-135246.1 UGUGUAUCCAUUCAAUCCUUCUG 13884538 4538-4560 AD-67536.1 A-135255.1 GGAUUGAAUGGAUACACCAAA 1299 4543A-135256.1 UUUGGUGUAUCCAUUCAAUCCUU 1389 4541 4541-4563

TABLE 8 PNPLA3 Modified Sequences Sense Oligo Duplex Name Name SenseSequence 5′ to 3′ SEQ ID NO AD-67524.1 A-135231.1gsgscuucCfuGfGfGfcuucuaccaaL96 1390 AD-67611.1 A-135409.1ususgugcGfgAfAfGfgccaggaguaL96 1391 AD-67601.1 A-135389.1asasggccAfgGfAfGfucggaacauuL96 1392 AD-67579.1 A-135341.1asgsgccaGfgAfGfUfcggaacauuaL96 1393 AD-67588.1 A-135361.1asascguuCfuGfGfUfgucugacuuuL96 1394 AD-67602.1 A-135391.1csusgacuUfuCfGfGfuccaaagacaL96 1395 AD-67570.1 A-135323.1uscsggucCfaAfAfGfacgaagucguL96 1396 AD-67553.1 A-135289.1csgsguccAfaAfGfAfcgaagucguaL96 1397 AD-67612.1 A-135411.1gsascgaaGfuCfGfUfggaugccuuaL96 1398 AD-67525.1 A-135233.1csusugguAfuGfUfUfccugcuucauL96 1399 AD-67526.1 A-135235.1gsgsccuuAfuCfCfCfuccuuccuuaL96 1400 AD-67592.1 A-135371.1asgsgaguGfaGfUfGfacaacguacaL96 1401 AD-67578.1 A-135339.1gsusgaguGfaCfAfAfcguacccuuaL96 1402 AD-67555.1 A-135293.1usgsaugcCfaAfAfAfcaaccaucaaL96 1403 AD-67577.1 A-135337.1csgsacauCfuGfCfCfcuaaagucaaL96 1404 AD-67594.1 A-135375.1ascsgaacUfuUfCfUfucauguggaaL96 1405 AD-67568.1 A-135319.1gscsacagGfgAfAfCfcucuaccuuaL96 1406 AD-67550.1 A-135283.1usgscuggGfaGfAfGfauaugccuuaL96 1407 AD-67586.1 A-135357.1usgsggagAfgAfUfAfugccuucgaaL96 1408 AD-67576.1 A-135335.1asgsagauAfuGfCfCfuucgaggauaL96 1409 AD-67563.1 A-135309.1asusaugcCfuUfCfGfaggauauuuaL96 1410 AD-67552.1 A-135287.1usgsccuuCfgAfGfGfauauuuggauL96 1411 AD-67608.1 A-135403.1asusucagGfuUfCfUfuggaagagaaL96 1412 AD-67593.1 A-135373.1csasuccuCfaGfAfAfgggauggauaL96 1413 AD-67609.1 A-135405.1cscsugccCfuGfGfGfaugagagcauL96 1414 AD-67597.1 A-135381.1gsascaaaGfgUfGfGfauacaugagaL96 1415 AD-67587.1 A-135359.1asasagguGfgAfUfAfcaugagcaaaL96 1416 AD-67559.1 A-135301.1gsusggauAfcAfUfGfagcaagauuuL96 1417 AD-67561.1 A-135305.1usgsgauaCfaUfGfAfgcaagauuuaL96 1418 AD-67551.1 A-135285.1asusacauGfaGfCfAfagauuugcaaL96 1419 AD-67591.1 A-135369.1asgscaagAfuUfUfGfcaacuugcuaL96 1420 AD-67583.1 A-135351.1csasagauUfuGfCfAfacuugcuacaL96 1421 AD-67585.1 A-135355.1usgscaacUfuGfCfUfacccauuagaL96 1422 AD-67589.1 A-135363.1asascuugCfuAfCfCfcauuaggauaL96 1423 AD-67595.1 A-135377.1gscscauuGfcGfAfUfuguccagagaL96 1424 AD-67580.1 A-135343.1gsasuuguCfcAfGfAfgacuggugaaL96 1425 AD-67573.1 A-135329.1usgsgugaCfaUfGfGfcuuccagauaL96 1426 AD-67600.1 A-135387.1cscsagauAfuGfCfCfcgacgauguaL96 1427 AD-67603.1 A-135393.1gsusgguuGfcAfGfUfgggugaccuaL96 1428 AD-67598.1 A-135383.1asgsguccCfaAfAfUfgccagugagaL96 1429 AD-67564.1 A-135311.1uscsacuuGfaGfGfAfggcgagucuaL96 1430 AD-67574.1 A-135331.1asgsucuaGfcAfGfAfuucuuucagaL96 1431 AD-67590.1 A-135365.1asusucuuUfcAfGfAfggugcuaaaaL96 1432 AD-67572.1 A-135327.1ususcuuuCfaGfAfGfgugcuaaaguL96 1433 AD-67582.1 A-135349.1gsusgcuaAfaGfUfUfucccaucuuuL96 1434 AD-67607.1 A-135401.1uscsccauCfuUfUfGfugcagcuacaL96 1435 AD-67571.1 A-135325.1csusgccuGfuGfAfCfguggaggauaL96 1436 AD-67599.1 A-135385.1usgsugacGfuGfGfAfggaucccagaL96 1437 AD-67554.1 A-135291.1uscsugagCfuGfAfGfuugguuuuauL96 1438 AD-67549.1 A-135281.1asgsuuggUfuUfUfAfugaaaagcuaL96 1439 AD-67567.1 A-135317.1ususgguuUfuAfUfGfaaaagcuagaL96 1440 AD-67558.1 A-135299.1gsgsuuuuAfuGfAfAfaagcuaggaaL96 1441 AD-67569.1 A-135321.1gsusuuuaUfgAfAfAfagcuaggaaaL96 1442 AD-67548.1 A-135279.1ususuuauGfaAfAfAfgcuaggaagaL96 1443 AD-67566.1 A-135315.1usasugaaAfaGfCfUfaggaagcaaaL96 1444 AD-67613.1 A-135413.1csgsuuaaUfuCfAfGfcugguugggaL96 1445 AD-67610.1 A-135407.1gsusuaauUfcAfGfCfugguugggaaL96 1446 AD-67556.1 A-135295.1asgscuggUfuGfGfGfaaaugacacaL96 1447 AD-67581.1 A-135345.1cscsuauuAfaUfGfGfucagacuguuL96 1448 AD-67560.1 A-135303.1csusauuaAfuGfGfUfcagacuguuaL96 1449 AD-67596.1 A-135379.1gscsuggcCfcAfUfGfugugaucuuaL96 1450 AD-67557.1 A-135297.1usgsgcccAfuGfUfGfugaucuuguaL96 1451 AD-67584.1 A-135353.1cscsuaacUfaAfAfAfuaauguuuaaL96 1452 AD-67575.1 A-135333.1ususaccuGfuUfGfAfauuuuguauuL96 1453 AD-67605.1 A-135397.1ascscuguUfgAfAfUfuuuguauuauL96 1454 AD-67562.1 A-135307.1usgsuauuAfuGfUfGfaaucagugaaL96 1455 AD-67606.1 A-135399.1usasugugAfaUfCfAfgugagauguuL96 1456 AD-67604.1 A-135395.1gsasuguuAfgUfAfGfaauaagccuuL96 1457 AD-67565.1 A-135313.1asusguuaGfuAfGfAfauaagccuuaL96 1458 AD-67529.1 A-135241.1usasuaauGfgAfGfAfuccucauggaL96 1459 AD-67533.1 A-135249.1gsusgucuGfaGfUfUfccauuccaaaL96 1460 AD-67537.1 A-135257.1asgsucguGfgAfUfGfcccugguguaL96 1461 AD-67546.1 A-135275.1usgscuauCfaAfGfGfguaccuggaaL96 1462 AD-67547.1 A-135277.1uscsccagGfuUfUfGfugcccgaauaL96 1463 AD-67543.1 A-135269.1cscsagguUfuGfUfGfcccgaaugaaL96 1464 AD-67541.1 A-135265.1usgsgagcAfaCfAfGfugucuagauaL96 1465 AD-67535.1 A-135253.1csusuuugGfaGfGfCfagcuaggaaaL96 1466 AD-67530.1 A-135243.1asasgacaAfuGfAfUfuugguguuuaL96 1467 AD-67542.1 A-135267.1gsascaauGfaUfUfUfgguguuuagaL96 1468 AD-67528.1 A-135239.1csasaugaUfuUfGfGfuguuuagaaaL96 1469 AD-67527.1 A-135237.1usgsccagAfuAfAfCfuuauuacuuuL96 1470 AD-67544.1 A-135271.1ascsaccuUfuGfGfCfucuuacuaauL96 1471 AD-67532.1 A-135247.1csusggcuCfcAfAfAfucuuuguauaL96 1472 AD-67534.1 A-135251.1usgsgcucCfaAfAfUfcuuuguauaaL96 1473 AD-67538.1 A-135259.1cscsaaauCfuUfUfGfuauagucauaL96 1474 AD-67545.1 A-135273.1asgsagacAfaAfGfUfgucuaggcuaL96 1475 AD-67539.1 A-135261.1asasguguCfuAfGfGfcuacacagaaL96 1476 AD-67540.1 A-135263.1asgsaaacUfuCfUfGfccuugcuuuaL96 1477 AD-67531.1 A-135245.1gsasaggaUfuGfAfAfuggauacacaL96 1478 AD-67536.1 A-135255.1gsgsauugAfaUfGfGfauacaccaaaL96 1479 Antisense Oligo SEQ ID Duplex NameName Antisense Sequence 5′ to 3′ NO AD-67524.1 A-135232.1usUfsgguAfgAfAfgcccAfgGfaagccsgsc 1480 AD-67611.1 A-135410.1usAfscucCfuGfGfccuuCfcGfcacaasgsa 1481 AD-67601.1 A-135390.1asAfsuguUfcCfGfacucCfuGfgccuuscsc 1482 AD-67579.1 A-135342.1usAfsaugUfuCfCfgacuCfcUfggccususc 1483 AD-67588.1 A-135362.1asAfsaguCfaGfAfcaccAfgAfacguususu 1484 AD-67602.1 A-135392.1usGfsucuUfuGfGfaccgAfaAfgucagsasc 1485 AD-67570.1 A-135324.1asCfsgacUfuCfGfucuuUfgGfaccgasasa 1486 AD-67553.1 A-135290.1usAfscgaCfuUfCfgucuUfuGfgaccgsasa 1487 AD-67612.1 A-135412.1usAfsaggCfaUfCfcacgAfcUfucgucsusu 1488 AD-67525.1 A-135234.1asUfsgaaGfcAfGfgaacAfuAfccaagsgsc 1489 AD-67526.1 A-135236.1usAfsaggAfaGfGfagggAfuAfaggccsasc 1490 AD-67592.1 A-135372.1usGfsuacGfuUfGfucacUfcAfcuccuscsc 1491 AD-67578.1 A-135340.1usAfsaggGfuAfCfguugUfcAfcucacsusc 1492 AD-67555.1 A-135294.1usUfsgauGfgUfUfguuuUfgGfcaucasasu 1493 AD-67577.1 A-135338.1usUfsgacUfuUfAfgggcAfgAfugucgsusa 1494 AD-67594.1 A-135376.1usUfsccaCfaUfGfaagaAfaGfuucgusgsg 1495 AD-67568.1 A-135320.1usAfsaggUfaGfAfgguuCfcCfugugcsasg 1496 AD-67550.1 A-135284.1usAfsaggCfaUfAfucucUfcCfcagcascsc 1497 AD-67586.1 A-135358.1usUfscgaAfgGfCfauauCfuCfucccasgsc 1498 AD-67576.1 A-135336.1usAfsuccUfcGfAfaggcAfuAfucucuscsc 1499 AD-67563.1 A-135310.1usAfsaauAfuCfCfucgaAfgGfcauauscsu 1500 AD-67552.1 A-135288.1asUfsccaAfaUfAfuccuCfgAfaggcasusa 1501 AD-67608.1 A-135404.1usUfscucUfuCfCfaagaAfcCfugaausgsc 1502 AD-67593.1 A-135374.1usAfsuccAfuCfCfcuucUfgAfggaugsasc 1503 AD-67609.1 A-135406.1asUfsgcuCfuCfAfucccAfgGfgcaggsasu 1504 AD-67597.1 A-135382.1usCfsucaUfgUfAfuccaCfcUfuugucsusu 1505 AD-67587.1 A-135360.1usUfsugcUfcAfUfguauCfcAfccuuusgsu 1506 AD-67559.1 A-135302.1asAfsaucUfuGfCfucauGfuAfuccacscsu 1507 AD-67561.1 A-135306.1usAfsaauCfuUfGfcucaUfgUfauccascsc 1508 AD-67551.1 A-135286.1usUfsgcaAfaUfCfuugcUfcAfuguauscsc 1509 AD-67591.1 A-135370.1usAfsgcaAfgUfUfgcaaAfuCfuugcuscsa 1510 AD-67583.1 A-135352.1usGfsuagCfaAfGfuugcAfaAfucuugscsu 1511 AD-67585.1 A-135356.1usCfsuaaUfgGfGfuagcAfaGfuugcasasa 1512 AD-67589.1 A-135364.1usAfsuccUfaAfUfggguAfgCfaaguusgsc 1513 AD-67595.1 A-135378.1usCfsucuGfgAfCfaaucGfcAfauggcsasg 1514 AD-67580.1 A-135344.1usUfscacCfaGfUfcucuGfgAfcaaucsgsc 1515 AD-67573.1 A-135330.1usAfsucuGfgAfAfgccaUfgUfcaccasgsu 1516 AD-67600.1 A-135388.1usAfscauCfgUfCfgggcAfuAfucuggsasa 1517 AD-67603.1 A-135394.1usAfsgguCfaCfCfcacuGfcAfaccacsasg 1518 AD-67598.1 A-135384.1usCfsucaCfuGfGfcauuUfgGfgaccusgsg 1519 AD-67564.1 A-135312.1usAfsgacUfcGfCfcuccUfcAfagugascsu 1520 AD-67574.1 A-135332.1usCfsugaAfaGfAfaucuGfcUfagacuscsg 1521 AD-67590.1 A-135366.1usUfsuuaGfcAfCfcucuGfaAfagaauscsu 1522 AD-67572.1 A-135328.1asCfsuuuAfgCfAfccucUfgAfaagaasusc 1523 AD-67582.1 A-135350.1asAfsagaUfgGfGfaaacUfuUfagcacscsu 1524 AD-67607.1 A-135402.1usGfsuagCfuGfCfacaaAfgAfugggasasa 1525 AD-67571.1 A-135326.1usAfsuccUfcCfAfcgucAfcAfggcagsgsg 1526 AD-67599.1 A-135386.1usCfsuggGfaUfCfcuccAfcGfucacasgsg 1527 AD-67554.1 A-135292.1asUfsaaaAfcCfAfacucAfgCfucagasgsg 1528 AD-67549.1 A-135282.1usAfsgcuUfuUfCfauaaAfaCfcaacuscsa 1529 AD-67567.1 A-135318.1usCfsuagCfuUfUfucauAfaAfaccaascsu 1530 AD-67558.1 A-135300.1usUfsccuAfgCfUfuuucAfuAfaaaccsasa 1531 AD-67569.1 A-135322.1usUfsuccUfaGfCfuuuuCfaUfaaaacscsa 1532 AD-67548.1 A-135280.1usCfsuucCfuAfGfcuuuUfcAfuaaaascsc 1533 AD-67566.1 A-135316.1usUfsugcUfuCfCfuagcUfuUfucauasasa 1534 AD-67613.1 A-135414.1usCfsccaAfcCfAfgcugAfaUfuaacgscsa 1535 AD-67610.1 A-135408.1usUfscccAfaCfCfagcuGfaAfuuaacsgsc 1536 AD-67556.1 A-135296.1usGfsuguCfaUfUfucccAfaCfcagcusgsa 1537 AD-67581.1 A-135346.1asAfscagUfcUfGfaccaUfuAfauaggsgsc 1538 AD-67560.1 A-135304.1usAfsacaGfuCfUfgaccAfuUfaauagsgsg 1539 AD-67596.1 A-135380.1usAfsagaUfcAfCfacauGfgGfccagcscsu 1540 AD-67557.1 A-135298.1usAfscaaGfaUfCfacacAfuGfggccasgsc 1541 AD-67584.1 A-135354.1usUfsaaaCfaUfUfauuuUfaGfuuaggsusg 1542 AD-67575.1 A-135334.1asAfsuacAfaAfAfuucaAfcAfgguaascsa 1543 AD-67605.1 A-135398.1asUfsaauAfcAfAfaauuCfaAfcaggusasa 1544 AD-67562.1 A-135308.1usUfscacUfgAfUfucacAfuAfauacasasa 1545 AD-67606.1 A-135400.1asAfscauCfuCfAfcugaUfuCfacauasasu 1546 AD-67604.1 A-135396.1asAfsggcUfuAfUfucuaCfuAfacaucsusc 1547 AD-67565.1 A-135314.1usAfsaggCfuUfAfuucuAfcUfaacauscsu 1548 AD-67529.1 A-135242.1usCfscauGfaGfGfaucuCfcAfuuauascsg 1549 AD-67533.1 A-135250.1usUfsuggAfaUfGfgaacUfcAfgacacscsa 1550 AD-67537.1 A-135258.1usAfscacCfaGfGfgcauCfcAfcgacususc 1551 AD-67546.1 A-135276.1usUfsccaGfgUfAfcccuUfgAfuagcascsa 1552 AD-67547.1 A-135278.1usAfsuucGfgGfCfacaaAfcCfugggasusg 1553 AD-67543.1 A-135270.1usUfscauUfcGfGfgcacAfaAfccuggsgsa 1554 AD-67541.1 A-135266.1usAfsucuAfgAfCfacugUfuGfcuccasgsa 1555 AD-67535.1 A-135254.1usUfsuccUfaGfCfugccUfcCfaaaagsusa 1556 AD-67530.1 A-135244.1usAfsaacAfcCfAfaaucAfuUfgucuususg 1557 AD-67542.1 A-135268.1usCfsuaaAfcAfCfcaaaUfcAfuugucsusu 1558 AD-67528.1 A-135240.1usUfsucuAfaAfCfaccaAfaUfcauugsusc 1559 AD-67527.1 A-135238.1asAfsaguAfaUfAfaguuAfuCfuggcasgsg 1560 AD-67544.1 A-135272.1asUfsuagUfaAfGfagccAfaAfgguguscsc 1561 AD-67532.1 A-135248.1usAfsuacAfaAfGfauuuGfgAfgccagsusg 1562 AD-67534.1 A-135252.1usUfsauaCfaAfAfgauuUfgGfagccasgsu 1563 AD-67538.1 A-135260.1usAfsugaCfuAfUfacaaAfgAfuuuggsasg 1564 AD-67545.1 A-135274.1usAfsgccUfaGfAfcacuUfuGfucucusasg 1565 AD-67539.1 A-135262.1usUfscugUfgUfAfgccuAfgAfcacuususg 1566 AD-67540.1 A-135264.1usAfsaagCfaAfGfgcagAfaGfuuucusasc 1567 AD-67531.1 A-135246.1usGfsuguAfuCfCfauucAfaUfccuucsusg 1568 AD-67536.1 A-135256.1usUfsuggUfgUfAfuccaUfuCfaauccsusu 1569

TABLE 9 PNPLA3 mRNA Target Sequences of Modifed PNPLA3 Agents in Table 8Sense Oligo Antissense SEQ ID Duplex Name Name Oligo Name mRNA targetsequence NO AD-67524.1 A-135231.1 A-135232.1 GCGGCUUCCUGGGCUUCUACCAC1570 AD-67611.1 A-135409.1 A-135410.1 UCUUGUGCGGAAGGCCAGGAGUC 1571AD-67601.1 A-135389.1 A-135390.1 GGAAGGCCAGGAGUCGGAACAUU 1572 AD-67579.1A-135341.1 A-135342.1 GAAGGCCAGGAGUCGGAACAUUG 1573 AD-67588.1 A-135361.1A-135362.1 AAAACGUUCUGGUGUCUGACUUU 1574 AD-67602.1 A-135391.1 A-135392.1GUCUGACUUUCGGUCCAAAGACG 1575 AD-67570.1 A-135323.1 A-135324.1UUUCGGUCCAAAGACGAAGUCGU 1576 AD-67553.1 A-135289.1 A-135290.1UUCGGUCCAAAGACGAAGUCGUG 1577 AD-67612.1 A-135411.1 A-135412.1AAGACGAAGUCGUGGAUGCCUUG 1578 AD-67525.1 A-135233.1 A-135234.1GCCUUGGUAUGUUCCUGCUUCAU 1579 AD-67526.1 A-135235.1 A-135236.1GUGGCCUUAUCCCUCCUUCCUUC 1580 AD-67592.1 A-135371.1 A-135372.1GGAGGAGUGAGUGACAACGUACC 1581 AD-67578.1 A-135339.1 A-135340.1GAGUGAGUGACAACGUACCCUUC 1582 AD-67555.1 A-135293.1 A-135294.1AUUGAUGCCAAAACAACCAUCAC 1583 AD-67577.1 A-135337.1 A-135338.1UACGACAUCUGCCCUAAAGUCAA 1584 AD-67594.1 A-135375.1 A-135376.1CCACGAACUUUCUUCAUGUGGAC 1585 AD-67568.1 A-135319.1 A-135320.1CUGCACAGGGAACCUCUACCUUC 1586 AD-67550.1 A-135283.1 A-135284.1GGUGCUGGGAGAGAUAUGCCUUC 1587 AD-67586.1 A-135357.1 A-135358.1GCUGGGAGAGAUAUGCCUUCGAG 1588 AD-67576.1 A-135335.1 A-135336.1GGAGAGAUAUGCCUUCGAGGAUA 1589 AD-67563.1 A-135309.1 A-135310.1AGAUAUGCCUUCGAGGAUAUUUG 1590 AD-67552.1 A-135287.1 A-135288.1UAUGCCUUCGAGGAUAUUUGGAU 1591 AD-67608.1 A-135403.1 A-135404.1GCAUUCAGGUUCUUGGAAGAGAA 1592 AD-67593.1 A-135373.1 A-135374.1GUCAUCCUCAGAAGGGAUGGAUC 1593 AD-67609.1 A-135405.1 A-135406.1AUCCUGCCCUGGGAUGAGAGCAU 1594 AD-67597.1 A-135381.1 A-135382.1AAGACAAAGGUGGAUACAUGAGC 1595 AD-67587.1 A-135359.1 A-135360.1ACAAAGGUGGAUACAUGAGCAAG 1596 AD-67559.1 A-135301.1 A-135302.1AGGUGGAUACAUGAGCAAGAUUU 1597 AD-67561.1 A-135305.1 A-135306.1GGUGGAUACAUGAGCAAGAUUUG 1598 AD-67551.1 A-135285.1 A-135286.1GGAUACAUGAGCAAGAUUUGCAA 1599 AD-67591.1 A-135369.1 A-135370.1UGAGCAAGAUUUGCAACUUGCUA 1600 AD-67583.1 A-135351.1 A-135352.1AGCAAGAUUUGCAACUUGCUACC 1601 AD-67585.1 A-135355.1 A-135356.1UUUGCAACUUGCUACCCAUUAGG 1602 AD-67589.1 A-135363.1 A-135364.1GCAACUUGCUACCCAUUAGGAUA 1603 AD-67595.1 A-135377.1 A-135378.1CUGCCAUUGCGAUUGUCCAGAGA 1604 AD-67580.1 A-135343.1 A-135344.1GCGAUUGUCCAGAGACUGGUGAC 1605 AD-67573.1 A-135329.1 A-135330.1ACUGGUGACAUGGCUUCCAGAUA 1606 AD-67600.1 A-135387.1 A-135388.1UUCCAGAUAUGCCCGACGAUGUC 1607 AD-67603.1 A-135393.1 A-135394.1CUGUGGUUGCAGUGGGUGACCUC 1608 AD-67598.1 A-135383.1 A-135384.1CCAGGUCCCAAAUGCCAGUGAGC 1609 AD-67564.1 A-135311.1 A-135312.1AGUCACUUGAGGAGGCGAGUCUA 1610 AD-67574.1 A-135331.1 A-135332.1CGAGUCUAGCAGAUUCUUUCAGA 1611 AD-67590.1 A-135365.1 A-135366.1AGAUUCUUUCAGAGGUGCUAAAG 1612 AD-67572.1 A-135327.1 A-135328.1GAUUCUUUCAGAGGUGCUAAAGU 1613 AD-67582.1 A-135349.1 A-135350.1AGGUGCUAAAGUUUCCCAUCUUU 1614 AD-67607.1 A-135401.1 A-135402.1UUUCCCAUCUUUGUGCAGCUACC 1615 AD-67571.1 A-135325.1 A-135326.1CCCUGCCUGUGACGUGGAGGAUC 1616 AD-67599.1 A-135385.1 A-135386.1CCUGUGACGUGGAGGAUCCCAGC 1617 AD-67554.1 A-135291.1 A-135292.1CCUCUGAGCUGAGUUGGUUUUAU 1618 AD-67549.1 A-135281.1 A-135282.1UGAGUUGGUUUUAUGAAAAGCUA 1619 AD-67567.1 A-135317.1 A-135318.1AGUUGGUUUUAUGAAAAGCUAGG 1620 AD-67558.1 A-135299.1 A-135300.1UUGGUUUUAUGAAAAGCUAGGAA 1621 AD-67569.1 A-135321.1 A-135322.1UGGUUUUAUGAAAAGCUAGGAAG 1622 AD-67548.1 A-135279.1 A-135280.1GGUUUUAUGAAAAGCUAGGAAGC 1623 AD-67566.1 A-135315.1 A-135316.1UUUAUGAAAAGCUAGGAAGCAAC 1624 AD-67613.1 A-135413.1 A-135414.1UGCGUUAAUUCAGCUGGUUGGGA 1625 AD-67610.1 A-135407.1 A-135408.1GCGUUAAUUCAGCUGGUUGGGAA 1626 AD-67556.1 A-135295.1 A-135296.1UCAGCUGGUUGGGAAAUGACACC 1627 AD-67581.1 A-135345.1 A-135346.1GCCCUAUUAAUGGUCAGACUGUU 1628 AD-67560.1 A-135303.1 A-135304.1CCCUAUUAAUGGUCAGACUGUUC 1629 AD-67596.1 A-135379.1 A-135380.1AGGCUGGCCCAUGUGUGAUCUUG 1630 AD-67557.1 A-135297.1 A-135298.1GCUGGCCCAUGUGUGAUCUUGUG 1631 AD-67584.1 A-135353.1 A-135354.1CACCUAACUAAAAUAAUGUUUAA 1632 AD-67575.1 A-135333.1 A-135334.1UGUUACCUGUUGAAUUUUGUAUU 1633 AD-67605.1 A-135397.1 A-135398.1UUACCUGUUGAAUUUUGUAUUAU 1634 AD-67562.1 A-135307.1 A-135308.1UUUGUAUUAUGUGAAUCAGUGAG 1635 AD-67606.1 A-135399.1 A-135400.1AUUAUGUGAAUCAGUGAGAUGUU 1636 AD-67604.1 A-135395.1 A-135396.1GAGAUGUUAGUAGAAUAAGCCUU 1637 AD-67565.1 A-135313.1 A-135314.1AGAUGUUAGUAGAAUAAGCCUUA 1638 AD-67529.1 A-135241.1 A-135242.1CGUAUAAUGGAGAUCCUCAUGGA 1639 AD-67533.1 A-135249.1 A-135250.1UGGUGUCUGAGUUCCAUUCCAAA 1640 AD-67537.1 A-135257.1 A-135258.1GAAGUCGUGGAUGCCCUGGUGUG 1641 AD-67546.1 A-135275.1 A-135276.1UGUGCUAUCAAGGGUACCUGGAC 1642 AD-67547.1 A-135277.1 A-135278.1CAUCCCAGGUUUGUGCCCGAAUG 1643 AD-67543.1 A-135269.1 A-135270.1UCCCAGGUUUGUGCCCGAAUGAC 1644 AD-67541.1 A-135265.1 A-135266.1UCUGGAGCAACAGUGUCUAGAUG 1645 AD-67535.1 A-135253.1 A-135254.1UACUUUUGGAGGCAGCUAGGAAG 1646 AD-67530.1 A-135243.1 A-135244.1CAAAGACAAUGAUUUGGUGUUUA 1647 AD-67542.1 A-135267.1 A-135268.1AAGACAAUGAUUUGGUGUUUAGA 1648 AD-67528.1 A-135239.1 A-135240.1GACAAUGAUUUGGUGUUUAGAAA 1649 AD-67527.1 A-135237.1 A-135238.1CCUGCCAGAUAACUUAUUACUUU 1650 AD-67544.1 A-135271.1 A-135272.1GGACACCUUUGGCUCUUACUAAU 1651 AD-67532.1 A-135247.1 A-135248.1CACUGGCUCCAAAUCUUUGUAUA 1652 AD-67534.1 A-135251.1 A-135252.1ACUGGCUCCAAAUCUUUGUAUAG 1653 AD-67538.1 A-135259.1 A-135260.1CUCCAAAUCUUUGUAUAGUCAUC 1654 AD-67545.1 A-135273.1 A-135274.1CUAGAGACAAAGUGUCUAGGCUA 1655 AD-67539.1 A-135261.1 A-135262.1CAAAGUGUCUAGGCUACACAGAA 1656 AD-67540.1 A-135263.1 A-135264.1GUAGAAACUUCUGCCUUGCUUUG 1657 AD-67531.1 A-135245.1 A-135246.1CAGAAGGAUUGAAUGGAUACACC 1658 AD-67536.1 A-135255.1 A-135256.1AAGGAUUGAAUGGAUACACCAAA 1659

TABLE 10 Hep3B PNPLA3 endogenous in vitro 10 nM and 0.1 nM single dosescreen Duplex 10 10 0.1 Name nM_AVG 10nM_STDEV nM_AVG 0.1 nM_STDEVAD-67524.1 85.34 6.47 90.33 14.17 AD-67611.1 111.68 23.20 95.28 9.27AD-67601.1 86.74 11.59 86.84 15.67 AD-67579.1 89.60 12.00 58.82 15.51AD-67588.1 57.73 16.50 64.15 8.44 AD-67602.1 66.35 12.49 86.76 8.21AD-67570.1 72.72 8.21 85.53 5.27 AD-67553.1 67.90 6.88 84.25 11.40AD-67612.1 62.03 12.34 51.52 5.24 AD-67525.1 42.50 9.07 65.77 14.98AD-67526.1 45.14 9.69 58.35 4.26 AD-67592.1 55.32 9.06 58.01 6.50AD-67578.1 51.16 8.74 53.17 15.71 AD-67555.1 92.88 23.69 66.11 10.08AD-67577.1 53.93 9.32 55.41 5.82 AD-67594.1 79.39 12.41 78.57 7.33AD-67568.1 43.12 7.69 65.24 11.56 AD-67550.1 62.65 16.23 87.64 22.99AD-67586.1 57.51 11.23 66.30 21.67 AD-67576.1 62.33 9.41 66.43 17.91AD-67563.1 56.23 17.97 69.60 6.43 AD-67552.1 55.69 5.10 103.09 5.25AD-67608.1 51.30 15.89 53.54 16.44 AD-67593.1 52.04 9.82 69.34 7.89AD-67609.1 90.41 32.12 73.63 16.54 AD-67597.1 78.98 19.93 90.94 16.10AD-67587.1 81.37 16.51 70.07 28.64 AD-67559.1 71.11 9.40 96.14 12.25AD-67561.1 50.85 14.84 56.18 15.19 AD-67551.1 37.30 6.63 53.00 4.52AD-67591.1 70.98 19.00 93.65 11.21 AD-67583.1 65.57 7.72 80.60 14.05AD-67585.1 53.90 14.18 52.77 10.67 AD-67589.1 43.29 5.45 54.29 4.43AD-67595.1 83.09 44.03 88.45 13.90 AD-67580.1 88.42 14.74 74.18 8.01AD-67573.1 60.57 4.91 71.22 17.26 AD-67600.1 70.88 0.97 65.57 10.49AD-67603.1 100.97 25.43 86.68 16.12 AD-67598.1 55.25 6.91 79.47 10.06AD-67564.1 65.67 14.01 60.23 4.86 AD-67574.1 63.24 16.91 68.91 19.35AD-67590.1 70.11 7.76 68.94 18.75 AD-67572.1 86.54 6.37 95.11 36.91AD-67582.1 57.31 14.76 52.76 8.24 AD-67607.1 59.03 14.94 59.28 10.58AD-67571.1 99.63 15.80 89.53 6.64 AD-67599.1 94.78 19.21 87.91 7.53AD-67554.1 36.53 8.09 56.06 5.32 AD-67549.1 56.20 20.65 56.90 10.27AD-67567.1 57.81 4.61 67.97 17.13 AD-67558.1 57.17 10.26 60.10 11.12AD-67569.1 66.43 25.81 58.49 14.52 AD-67548.1 52.14 8.72 75.41 15.44AD-67566.1 54.88 11.91 51.93 11.84 AD-67613.1 83.78 26.96 79.37 8.59AD-67610.1 78.50 18.94 80.88 11.97 AD-67556.1 87.08 5.39 87.94 8.28AD-67581.1 52.21 11.55 84.89 7.12 AD-67560.1 51.65 4.09 67.85 6.59AD-67596.1 82.71 20.80 76.57 11.58 AD-67557.1 56.15 8.28 90.70 5.11AD-67584.1 42.16 6.42 38.63 13.85 AD-67575.1 42.62 11.19 54.35 9.20AD-67605.1 43.75 11.62 59.95 7.68 AD-67562.1 73.26 11.12 72.58 11.11AD-67606.1 86.42 38.80 75.45 12.67 AD-67604.1 64.47 6.80 72.33 10.76AD-67565.1 49.43 3.37 54.34 12.25 AD-67529.1 96.11 23.73 104.54 5.56AD-67533.1 91.29 27.25 102.72 10.83 AD-67537.1 96.12 30.20 90.92 17.55AD-67546.1 117.18 35.85 90.75 10.80 AD-67547.1 109.66 23.27 110.07 17.90AD-67543.1 106.67 27.98 103.10 22.41 AD-67541.1 112.89 34.51 105.5018.29 AD-67535.1 95.95 17.30 111.96 8.37 AD-67530.1 86.64 13.15 89.6410.56 AD-67542.1 108.30 12.22 111.03 18.93 AD-67528.1 86.06 15.40 100.5211.52 AD-67527.1 94.22 9.43 103.95 8.31 AD-67544.1 95.63 16.01 94.255.66 AD-67532.1 96.24 10.13 114.20 14.38 AD-67534.1 104.27 20.55 101.2414.18 AD-67538.1 108.29 29.79 99.37 10.01 AD-67545.1 110.68 11.06 143.5645.88 AD-67539.1 106.92 43.45 107.56 15.77 AD-67540.1 104.01 18.83105.58 12.67 AD-67531.1 117.06 37.65 102.32 27.15 AD-67536.1 104.51 7.42110.11 14.23

TABLE 11 Cynomolgus monkey PNPLA3 endogenous in vitro 10 nM and 0.1 nMsingle dose screen Duplex 10 10 0.1 0.1 Name nM_AVG nM_STDEV nM_AVGnM_STDEV AD-67524.1 64.22 12.50 98.57 57.56 AD-67611.1 201.95 55.02147.71 34.65 AD-67601.1 106.76 23.66 104.01 20.80 AD-67579.1 69.15 24.0239.69 7.49 AD-67588.1 34.18 13.04 58.34 19.48 AD-67602.1 64.07 21.95114.16 40.22 AD-67570.1 45.66 21.83 92.73 22.46 AD-67553.1 61.54 20.5178.87 33.03 AD-67612.1 49.05 10.63 68.98 21.48 AD-67525.1 58.61 6.5683.50 29.86 AD-67526.1 48.75 19.00 81.70 44.79 AD-67592.1 54.34 23.45107.45 52.70 AD-67578.1 54.22 18.19 62.05 18.44 AD-67555.1 83.45 13.6396.21 32.86 AD-67577.1 41.40 13.97 50.80 20.40 AD-67594.1 71.17 26.2390.30 12.23 AD-67568.1 28.74 8.05 56.57 12.90 AD-67550.1 67.27 14.09102.11 22.04 AD-67586.1 44.83 10.13 52.06 1.96 AD-67576.1 61.04 36.5878.16 7.18 AD-67563.1 85.83 27.55 88.34 7.26 AD-67552.1 70.65 36.42112.67 14.77 AD-67608.1 65.16 37.26 90.87 21.05 AD-67593.1 72.95 19.92108.58 27.09 AD-67609.1 83.80 52.06 113.25 23.43 AD-67597.1 57.86 7.16101.52 29.68 AD-67587.1 71.36 33.38 83.46 28.71 AD-67559.1 38.13 5.5785.54 20.52 AD-67561.1 49.61 17.03 75.51 35.59 AD-67551.1 24.74 13.0157.84 19.55 AD-67591.1 65.58 11.64 70.61 18.06 AD-67583.1 35.16 12.0156.71 13.29 AD-67585.1 51.64 38.68 91.09 23.58 AD-67589.1 30.43 8.5055.59 15.49 AD-67595.1 64.53 12.69 108.07 61.59 AD-67580.1 52.22 14.6359.80 19.21 AD-67573.1 47.55 19.02 69.12 8.02 AD-67600.1 55.58 11.6992.41 26.52 AD-67603.1 119.04 50.54 152.95 37.00 AD-67598.1 51.72 17.5184.34 25.38 AD-67564.1 58.62 27.17 77.33 37.58 AD-67574.1 33.51 14.7845.90 17.45 AD-67590.1 40.45 9.84 56.63 12.25 AD-67572.1 47.06 14.4977.89 27.67 AD-67582.1 27.10 5.89 49.41 18.11 AD-67607.1 43.61 8.2772.35 13.09 AD-67571.1 109.27 56.41 69.47 23.50 AD-67599.1 83.03 58.7483.94 15.01 AD-67554.1 19.86 10.03 85.24 13.88 AD-67549.1 38.63 14.5394.17 23.93 AD-67567.1 31.60 11.57 71.66 11.57 AD-67558.1 39.31 19.5167.91 23.15 AD-67569.1 35.42 13.52 37.45 9.62 AD-67548.1 84.14 21.2783.38 26.65 AD-67566.1 26.85 5.90 47.24 9.79 AD-67613.1 90.32 43.98110.21 22.37 AD-67610.1 76.90 29.15 116.95 25.59 AD-67556.1 99.65 38.9478.32 27.42 AD-67581.1 31.34 9.79 69.04 11.53 AD-67560.1 25.86 10.0049.96 14.82 AD-67596.1 70.39 22.12 83.45 32.21 AD-67557.1 30.36 3.6777.23 33.61 AD-67584.1 30.34 10.44 35.30 9.75 AD-67575.1 29.04 9.1748.86 8.65 AD-67605.1 62.92 35.30 97.67 46.22 AD-67562.1 149.14 76.05137.22 31.54 AD-67606.1 53.08 12.65 76.76 17.13 AD-67604.1 45.22 6.4990.48 27.49 AD-67565.1 58.35 24.21 60.94 28.29 AD-67529.1 158.59 45.47150.25 53.50 AD-67533.1 142.31 43.60 146.81 39.93 AD-67537.1 141.4343.53 173.26 50.75 AD-67546.1 176.38 88.77 147.25 35.28 AD-67547.1160.76 104.70 125.22 35.52 AD-67543.1 117.94 26.94 178.90 44.99AD-67541.1 171.26 52.40 148.66 41.86 AD-67535.1 117.80 12.65 154.8734.75 AD-67530.1 130.28 46.60 124.85 37.32 AD-67542.1 130.98 44.83158.70 46.06 AD-67528.1 131.06 56.44 149.25 40.56 AD-67527.1 128.9429.24 154.29 24.13 AD-67544.1 122.80 57.17 155.85 21.25 AD-67532.1 73.6820.38 130.31 58.83 AD-67534.1 173.61 86.25 174.54 61.47 AD-67538.1153.55 53.00 170.55 45.06 AD-67545.1 139.49 20.95 128.18 37.75AD-67539.1 258.50 123.06 144.40 39.80 AD-67540.1 139.83 54.43 134.3334.88 AD-67531.1 131.80 41.72 155.34 63.49 AD-67536.1 143.28 42.58150.88 41.76

TABLE 12 Cynomolgus monkey PNPLA3 endogenous in vitro dose responsescreen Duplex Name IC₅₀ (nM) AD-67525.1 0.003 AD-67526.1 0.005AD-67551.1 0.298 AD-67554.1 0.003 AD-67560.1 0.034 AD-67568.1 0.049AD-67575.1 0.317 AD-67577.1 0.001 AD-67578.1 0.001 AD-67581.1 0.081AD-67582.1 0.058 AD-67584.1 0.001 AD-67585.1 0.038 AD-67592.1 0.216AD-67605.1 0.123 AD-67612.1 1.381

TABLE 13 Mouse PNPLA3 endogenous in vitro 10 nM and 0.1 nM single dosescreen Duplex 10 10 0.1 Name nM_AVG nM_STDEV nM_AVG 0.1 nM_STDEVAD-67524.1 59.20 19.07 172.14 102.64 AD-67611.1 101.53 39.04 166.8416.96 AD-67601.1 106.69 30.70 133.40 10.57 AD-67579.1 93.33 23.59 111.5917.65 AD-67588.1 87.03 12.30 114.60 9.93 AD-67602.1 99.22 9.70 127.478.95 AD-67570.1 19.23 14.62 74.87 29.73 AD-67553.1 15.43 7.94 60.4946.00 AD-67612.1 28.43 11.87 91.40 64.47 AD-67525.1 39.75 26.63 140.8839.79 AD-67526.1 16.16 5.74 97.66 43.58 AD-67592.1 25.04 16.02 117.3519.59 AD-67578.1 27.07 18.71 138.94 57.91 AD-67555.1 43.71 36.83 148.8953.90 AD-67577.1 35.95 24.04 106.43 62.19 AD-67594.1 118.99 24.43 118.9822.56 AD-67568.1 22.01 15.09 104.04 28.73 AD-67550.1 128.32 33.32 153.2221.77 AD-67586.1 74.59 3.44 106.75 20.87 AD-67576.1 79.48 5.82 129.0931.89 AD-67563.1 141.90 59.30 132.24 34.38 AD-67552.1 143.18 49.65124.20 18.26 AD-67608.1 154.76 66.58 190.93 42.10 AD-67593.1 112.2146.12 116.10 14.11 AD-67609.1 164.89 46.54 171.23 27.85 AD-67597.1145.67 37.55 143.83 34.86 AD-67587.1 102.09 20.42 106.63 18.56AD-67559.1 126.57 13.72 137.00 24.64 AD-67561.1 121.82 26.66 151.6235.30 AD-67551.1 152.46 60.75 133.95 21.61 AD-67591.1 166.93 65.07145.36 28.46 AD-67583.1 127.60 32.09 142.44 42.81 AD-67585.1 99.84 23.69148.35 48.23 AD-67589.1 106.32 18.73 156.26 53.14 AD-67595.1 105.4018.78 123.24 28.02 AD-67580.1 105.49 27.33 127.82 10.97 AD-67573.1 17.457.76 126.15 41.24 AD-67600.1 86.36 21.17 126.08 20.47 AD-67603.1 104.9535.50 142.30 15.52 AD-67598.1 95.85 23.74 172.20 35.33 AD-67564.1 109.0017.65 121.28 23.44 AD-67574.1 86.31 11.33 131.22 27.38 AD-67590.1 136.2158.52 123.09 14.38 AD-67572.1 139.23 24.55 115.97 17.05 AD-67582.1126.01 33.04 165.25 40.55 AD-67607.1 94.42 35.45 121.14 19.57 AD-67571.1112.27 26.92 120.03 21.17 AD-67599.1 171.97 24.42 113.09 20.69AD-67554.1 125.76 26.14 118.60 35.12 AD-67549.1 119.56 65.06 150.2016.69 AD-67567.1 133.44 93.04 144.51 44.20 AD-67558.1 158.66 58.69115.42 22.09 AD-67569.1 123.35 42.23 150.79 30.96 AD-67548.1 130.2431.18 126.72 29.14 AD-67566.1 97.88 15.18 161.34 45.64 AD-67613.1 133.1553.50 164.06 35.86 AD-67610.1 125.68 41.94 123.89 17.82 AD-67556.1129.25 45.87 156.50 34.41 AD-67581.1 81.75 13.75 127.10 26.78 AD-67560.1119.69 56.51 127.65 12.06 AD-67596.1 104.08 30.46 128.33 24.04AD-67557.1 78.91 9.50 127.50 9.39 AD-67584.1 131.87 19.40 128.29 20.96AD-67575.1 124.30 43.53 151.26 44.05 AD-67605.1 122.92 37.28 120.3716.17 AD-67562.1 124.35 35.73 109.59 17.85 AD-67606.1 160.77 45.92152.73 33.64 AD-67604.1 111.98 13.56 167.29 31.28 AD-67565.1 135.8113.80 120.59 16.82 AD-67529.1 38.14 15.75 121.25 64.05 AD-67533.1 12.735.26 16.84 7.89 AD-67537.1 86.70 19.46 92.22 10.90 AD-67546.1 51.0819.80 93.17 14.25 AD-67547.1 23.08 14.10 64.05 22.49 AD-67543.1 79.5028.07 111.48 34.28 AD-67541.1 18.70 11.01 55.21 13.26 AD-67535.1 36.5612.86 93.32 28.28 AD-67530.1 33.36 9.33 41.89 15.37 AD-67542.1 23.317.40 84.60 16.44 AD-67528.1 17.24 5.43 27.71 5.90 AD-67527.1 19.79 1.8037.50 17.14 AD-67544.1 11.14 3.90 24.01 9.11 AD-67532.1 19.67 6.21 45.0222.68 AD-67534.1 15.07 3.74 42.41 21.95 AD-67538.1 10.11 1.51 46.11 9.50AD-67545.1 24.38 5.53 69.48 8.00 AD-67539.1 27.60 4.13 80.14 19.65AD-67540.1 19.25 4.32 64.45 17.14 AD-67531.1 33.63 15.63 50.55 16.20AD-67536.1 10.87 5.44 39.87 14.64

TABLE 14 Mouse PNPLA3 endogenous in vitro dose response screen DuplexName IC₅₀ (nM) AD-67525.1 n/a AD-67526.1 n/a AD-67527.1 2.309 AD-67528.10.673 AD-67530.1 0.921 AD-67531.1 0.581 AD-67532.1 1.425 AD-67533.10.567 AD-67534.1 4.128 AD-67536.1 2.288 AD-67538.1 0.538 AD-67544.10.608 AD-67577.1 n/a AD-67578.1 n/a

TABLE 15 Human PNPLA3 Dual-Glo ® in vitro 10 nM and 0.1 nM single dosescreen Duplex 10 10 0.1 Name nM_AVG nM_STDEV nM_AVG 0.1 nM_STDEVAD-67524.1 55.85 7.32 102.37 32.69 AD-67611.1 107.30 22.70 97.85 2.28AD-67601.1 95.78 11.23 85.88 29.26 AD-67579.1 77.51 8.06 101.67 36.37AD-67588.1 47.11 6.33 89.10 18.85 AD-67602.1 77.70 12.22 81.37 13.84AD-67570.1 48.66 10.55 68.57 28.45 AD-67553.1 44.56 7.76 93.93 38.43AD-67612.1 38.37 0.82 75.31 20.53 AD-67525.1 29.59 9.56 62.31 9.28AD-67526.1 53.90 3.79 70.76 15.61 AD-67592.1 52.84 10.35 98.32 32.26AD-67578.1 53.64 4.02 64.89 13.47 AD-67555.1 56.39 10.80 69.54 19.05AD-67577.1 48.65 10.91 54.23 6.43 AD-67594.1 74.48 1.78 93.18 24.59AD-67568.1 45.05 1.82 92.90 28.78 AD-67550.1 44.13 4.53 68.69 20.38AD-67586.1 64.19 5.26 84.24 40.47 AD-67576.1 79.72 15.25 82.61 35.92AD-67563.1 29.23 4.19 59.00 12.91 AD-67552.1 54.78 11.92 79.03 16.42AD-67608.1 57.15 4.59 77.51 11.84 AD-67593.1 101.86 11.04 96.29 17.81AD-67609.1 122.26 11.52 128.58 16.30 AD-67597.1 62.83 5.62 101.58 38.86AD-67587.1 57.38 14.11 105.10 27.16 AD-67559.1 51.66 5.22 91.89 14.10AD-67561.1 51.41 3.67 71.48 29.44 AD-67551.1 34.40 1.24 49.32 10.41AD-67591.1 60.13 3.19 90.29 18.00 AD-67583.1 36.86 2.53 93.04 25.60AD-67585.1 53.41 8.56 79.44 18.57 AD-67589.1 37.94 7.73 75.57 10.11AD-67595.1 75.77 8.06 90.18 31.68 AD-67580.1 71.41 1.40 74.67 23.67AD-67573.1 70.86 4.99 84.53 20.34 AD-67600.1 72.31 16.88 78.24 10.32AD-67603.1 75.73 13.27 83.86 13.43 AD-67598.1 77.98 14.11 86.38 27.50AD-67564.1 75.61 4.75 112.02 16.56 AD-67574.1 60.65 11.08 83.89 27.59AD-67590.1 58.37 10.03 73.59 23.40 AD-67572.1 96.15 19.05 99.37 14.65AD-67582.1 35.14 4.73 61.85 10.01 AD-67607.1 35.55 8.50 66.52 7.13AD-67571.1 87.08 10.17 90.89 10.55 AD-67599.1 102.26 6.41 94.34 3.26AD-67554.1 47.64 4.28 69.79 12.50 AD-67549.1 27.66 2.50 51.69 14.59AD-67567.1 37.31 6.07 64.11 19.16 AD-67558.1 30.72 4.79 72.23 22.28AD-67569.1 36.42 1.62 68.82 8.06 AD-67548.1 59.63 13.22 94.53 28.41AD-67566.1 54.82 11.76 58.13 29.99 AD-67613.1 70.40 10.36 69.65 14.48AD-67610.1 75.42 12.56 83.75 10.26 AD-67556.1 84.41 2.30 91.86 36.53AD-67581.1 53.86 14.24 100.03 42.15 AD-67560.1 40.96 10.50 64.75 25.60AD-67596.1 75.01 9.11 99.67 17.69 AD-67557.1 46.45 5.85 82.71 7.14AD-67584.1 30.32 1.09 29.60 4.38 AD-67575.1 18.95 5.11 34.22 7.00AD-67605.1 18.06 8.25 31.33 15.81 AD-67562.1 53.05 12.05 65.06 24.50AD-67606.1 27.53 7.98 44.22 17.40 AD-67604.1 51.35 1.71 78.70 19.78AD-67565.1 19.72 1.66 44.43 16.60

TABLE 16 Human PNPLA3 Dual-Glo ® in vitro dose response screen DuplexName IC₅₀ (nM) AD-67584.1 0.1149 AD-67605.1 0.0915 AD-67575.1 0.1616AD-67606.1 0.5824 AD-67565.1 0.1988 AD-67551.1 0.6022 AD-67549.1 0.7905

Example 4. In Vivo Effect of Single Dose Administration of PNPLA3 iRNAAgent

Ob/ob mice strongly express PNPLA3 in the liver. Accordingly, Ob/ob mice(B6.Cg-Lepob/J) were administered a single subcutaneous dose of 0.3mg/kg, 1.5 mg/kg, or 3.0 mg/kg, or PBS alone as a control, of AD-67525,AD-67526, AD-67528, AD-65731, AD67533, AD-67538, or AD-67544. Theanimals were sacrificed and the livers were excised 96 hours post-doseand the level of PNPLA3 mRNA was quantified by RT-qPCR.

As shown in FIG. 1, AD-65726 administered as a single 1.5. mg/kg dose,or AD-67533 administered as a single 3.0 mg/kg dose exhibited the mostrobust suppression of hepatic PNPLA3 of the agents and doses assayed.

EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain usingno more than routine experimentation, many equivalents to the specificembodiments and methods described herein. Such equivalents are intendedto be encompassed by the scope of the following claims.

We claim:
 1. A double stranded ribonucleic acid (RNAi) agent forinhibiting expression of Patatin-Like Phospholipase Domain Containing 3(PNPLA3), wherein said double stranded RNAi agent comprises a sensestrand and an antisense strand, the antisense strand comprising a regionof complementarity which comprises at least 15 contiguous nucleotidesdiffering by no more than 3 nucleotides from any one of the antisensesequences listed in any one of Tables 3-5, 7, and
 8. 2. The doublestranded RNAi agent of claim 1, wherein said double stranded RNAi agentcomprises at least one modified nucleotide.
 3. The double stranded RNAiagent of claim 2, wherein the modified nucleotides is selected from thegroup consisting of a deoxy-nucleotide, a 3′-terminal deoxy-thymine (dT)nucleotide, a 2′-O-methyl modified nucleotide, a 2′-fluoro modifiednucleotide, a 2′-deoxy-modified nucleotide, a locked nucleotide, anunlocked nucleotide, a conformationally restricted nucleotide, aconstrained ethyl nucleotide, an abasic nucleotide, a 2′-amino-modifiednucleotide, a 2′-O-allyl-modified nucleotide, 2′-C-alkyl-modifiednucleotide, 2′-hydroxly-modified nucleotide, a 2′-methoxyethyl modifiednucleotide, a 2′-O-alkyl-modified nucleotide, a morpholino nucleotide, aphosphoramidate, a non-natural base comprising nucleotide, atetrahydropyran modified nucleotide, a 1,5-anhydrohexitol modifiednucleotide, a cyclohexenyl modified nucleotide, a nucleotide comprisinga phosphorothioate group, a nucleotide comprising a methylphosphonategroup, a nucleotide comprising a 5′-phosphate, and a nucleotidecomprising a 5′-phosphate mimic.
 4. The double stranded RNAi agent ofclaim 1, wherein the region of complementarity is at least 17nucleotides in length; between 19 and 21 nucleotides in length; or 19nucleotides in length.
 5. The double stranded RNAi agent of claim 1,wherein each strand is no more than 30 nucleotides in length.
 6. Thedouble stranded RNAi agent of claim 1, wherein at least one strandcomprises a 3′ overhang of at least 1 nucleotide; or at least 2nuclotides.
 7. The double stranded RNAi agent of claim 1, furthercomprising a ligand.
 8. A double stranded ribonucleic acid (RNAi) agentfor inhibiting the expression of PNPLA3, wherein said double strandedRNAi agent comprises a sense strand complementary to an antisensestrand, wherein said antisense strand comprises a region complementaryto part of an mRNA encoding PNPLA3, wherein each strand is about 14 toabout 30 nucleotides in length, wherein said double stranded RNAi agentis represented by formula (III): (III) sense: 5′ n_(p)-N_(a)-(X XX)_(i)-N_(b)-Y Y Y-N_(b)-(Z Z Z)_(j)-N_(a)-n_(q) 3′ antisense:3′ n_(p)′-N_(a)′-(X′X′X′)_(k)-N_(b)′-Y′Y′Y′-N_(b)′-(Z′Z′Z′)_(l)-N_(a)′-n_(q)′ 5′

wherein: i, j, k, and l are each independently 0 or 1; p, p′, q, and q′are each independently 0-6; each N_(a) and N_(a)′ independentlyrepresents an oligonucleotide sequence comprising 0-25 nucleotides whichare either modified or unmodified or combinations thereof, each sequencecomprising at least two differently modified nucleotides; each N_(b) andN_(b)′ independently represents an oligonucleotide sequence comprising0-10 nucleotides which are either modified or unmodified or combinationsthereof; each n_(p), n_(p)′, n_(q), and n_(q)′, each of which may or maynot be present, independently represents an overhang nucleotide; XXX,YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent onemotif of three identical modifications on three consecutive nucleotides;modifications on N_(b) differ from the modification on Y andmodifications on N_(b)′ differ from the modification on Y′; and whereinthe sense strand is conjugated to at least one ligand.
 9. The doublestranded RNAi agent of claim 8, wherein formula (III) is represented bya formula selected from the group consisting of formula (IIIa): (IIIa)sense: 5′ n_(p)-N_(a)-Y Y Y-N_(a)-n_(q) 3′ antisense:3′ n_(p′)-N_(a′)-Y′Y′Y′-N_(a′)-n_(q′) 5′; formula (IIIb): (IIIb) sense:5′ n_(p)-N_(a)-Y Y Y-N_(b)-Z Z Z-N_(a)-n_(q) 3′ antisense:3′ n_(p′)-N_(a′)-Y′Y′Y′-N_(b′)-Z′Z′Z′-N_(a′)-n_(q′) 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides; formula(IIIc): (IIIc) sense: 5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(a)-n_(q) 3′antisense: 3′ n_(p′)-N_(a′)-X′X′X′-N_(b′)-Y′Y′Y′-N_(a′)-n_(q′) 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides; andformula (IIId): (IIId) sense: 5′ n_(p)-N_(a)-X X X-N_(b)-Y Y Y-N_(b)-Z ZZ-N_(a)-n_(q) 3′ antisense:3′ n_(p′)-N_(a′)-X′X′X′-N_(b′)-Y′Y′Y′-N_(b′)-Z′Z′Z′-N_(a′)-n_(q′) 5′

wherein each N_(b) and N_(b)′ independently represents anoligonucleotide sequence comprising 1-5 modified nucleotides and eachN_(a) and N_(a)′ independently represents an oligonucleotide sequencecomprising 2-10 modified nucleotides.
 10. The double stranded RNAi agentof claim 7 or 8, wherein the ligand is one or more GalNAc derivativesattached through a bivalent or trivalent branched linker.
 11. The doublestranded RNAi agent of any one of claim 10, the ligand is


12. The double stranded RNAi agent of claim 1 or 8, wherein said doublestranded RNAi agent further comprises at least one phosphorothioate ormethylphosphonate internucleotide linkage.
 13. A cell containing thedouble stranded RNAi agent of claim
 1. 14. A pharmaceutical compositionfor inhibiting expression of a PNPLA3 gene comprising the doublestranded RNAi agent of claim
 1. 15. A method of inhibiting PNPLA3expression in a cell, the method comprising: (a) contacting the cellwith the double stranded RNAi agent of claim 1 or a pharmaceuticalcomposition of claim 14; and (b) maintaining the cell produced in step(a) for a time sufficient to obtain degradation of the mRNA transcriptof a PNPLA3 gene, thereby inhibiting expression of the PNPLA3 gene inthe cell.
 16. The method of claim 15, wherein said cell is within asubject.
 17. The method of claim 16, wherein the subject is a human. 18.A method of treating a subject having a disease or disorder that wouldbenefit from reduction in PNPLA3 expression, the method comprisingadministering to the subject a therapeutically effective amount of thedouble stranded RNAi agent of claim 1 or a pharmaceutical composition ofclaim 14, thereby treating said subject.
 19. A method of preventing atleast one symptom in a subject having a disease or disorder that wouldbenefit from reduction in PNPLA3 expression, the method comprisingadministering to the subject a prophylactically effective amount of thedouble stranded RNAi agent of claim 1 or a pharmaceutical composition ofclaim 14, thereby preventing at least one symptom in the subject havinga disorder that would benefit from reduction in PNPLA3 expression. 20.The method of claim 18 or 19, wherein the disorder is aPNPLA3-associated disease.
 21. The method of any one of claim 18 or 19,further comprising administering an anti-PNPLA3 antibody, orantigen-binding fragment thereof, to the subject.